Wall clock time and date at job start Tue Mar 31 2020 21:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48500 * 109.47011 * 239.99771 * 3 2 1 5 5 H 1.48503 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47247 * 120.00112 * 3 2 1 7 7 C 1.38809 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99684 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99985 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64994 * 359.96973 * 9 7 2 11 11 C 1.54911 * 104.83079 * 155.91171 * 10 9 7 12 12 C 1.55155 * 101.58194 * 37.01122 * 11 10 9 13 13 H 1.08990 * 110.72277 * 83.04058 * 12 11 10 14 14 C 1.53003 * 110.71629 * 206.13820 * 12 11 10 15 15 H 1.08995 * 109.70774 * 69.43438 * 14 12 11 16 16 C 1.52764 * 109.50671 * 309.31435 * 14 12 11 17 17 C 1.53040 * 109.38188 * 185.70944 * 16 14 12 18 18 C 1.53048 * 109.53944 * 61.24049 * 17 16 14 19 19 C 1.53195 * 109.31111 * 298.63396 * 18 17 16 20 20 N 1.46929 * 108.77540 * 54.63410 * 19 18 17 21 21 C 1.34773 * 120.63034 * 126.36437 * 20 19 18 22 22 O 1.21280 * 119.99898 * 186.35371 * 21 20 19 23 23 C 1.50704 * 120.00165 * 6.35982 * 21 20 19 24 24 C 1.53001 * 115.55050 * 78.58640 * 23 21 20 25 25 C 1.53001 * 109.46882 * 39.95747 * 24 23 21 26 26 F 1.39899 * 109.46660 * 184.70361 * 25 24 23 27 27 C 1.53002 * 117.49409 * 292.92118 * 23 21 20 28 28 C 1.52999 * 60.02994 * 252.49782 * 27 23 21 29 29 C 1.47022 * 125.64363 * 180.02562 * 9 7 2 30 30 H 0.97002 * 119.99892 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.36503 * 37.07065 * 10 9 7 32 32 H 1.09000 * 110.46126 * 274.79407 * 10 9 7 33 33 H 1.08996 * 111.00455 * 278.93102 * 11 10 9 34 34 H 1.08998 * 111.00284 * 155.08193 * 11 10 9 35 35 H 1.08995 * 109.56766 * 65.67243 * 16 14 12 36 36 H 1.09004 * 109.35892 * 305.61599 * 16 14 12 37 37 H 1.09000 * 109.46313 * 301.22337 * 17 16 14 38 38 H 1.08999 * 109.46375 * 181.25788 * 17 16 14 39 39 H 1.08998 * 109.49886 * 178.68579 * 18 17 16 40 40 H 1.08997 * 109.49793 * 58.58223 * 18 17 16 41 41 H 1.08998 * 109.58661 * 294.85049 * 19 18 17 42 42 H 1.08997 * 109.58706 * 174.41871 * 19 18 17 43 43 H 1.08997 * 109.47133 * 159.95667 * 24 23 21 44 44 H 1.09002 * 109.47099 * 279.95686 * 24 23 21 45 45 H 1.09003 * 109.47350 * 304.70322 * 25 24 23 46 46 H 1.08999 * 109.47043 * 64.70414 * 25 24 23 47 47 H 1.09001 * 117.49868 * 359.97438 * 27 23 21 48 48 H 1.08997 * 117.49814 * 144.99777 * 27 23 21 49 49 H 1.08996 * 117.50119 * 107.50353 * 28 27 23 50 50 H 1.09000 * 117.50093 * 252.52678 * 28 27 23 51 51 H 1.09003 * 109.88787 * 61.60505 * 29 9 7 52 52 H 1.09001 * 109.88380 * 300.43364 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 0.0006 11 6 -0.4016 -3.9326 -0.6106 12 6 0.7784 -4.7524 -0.0251 13 1 0.5447 -5.1002 0.9810 14 6 1.1232 -5.9317 -0.9370 15 1 1.5658 -5.5636 -1.8625 16 6 -0.1475 -6.7165 -1.2583 17 6 0.2187 -7.9734 -2.0510 18 6 1.1366 -8.8612 -1.2075 19 6 2.4261 -8.0982 -0.8883 20 7 2.0746 -6.8197 -0.2551 21 6 2.6105 -6.4708 0.9312 22 8 2.2273 -5.4699 1.4988 23 6 3.6860 -7.3243 1.5525 24 6 5.0898 -7.1437 0.9715 25 6 5.3389 -5.6602 0.6919 26 9 6.5786 -5.5062 0.0622 27 6 3.2915 -8.7254 2.0240 28 6 3.5734 -7.6252 3.0491 29 6 1.9318 -3.7274 0.0016 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5992 -1.7591 -0.6153 32 1 -0.5290 -2.4857 1.0183 33 1 -0.3520 -3.8989 -1.6989 34 1 -1.3589 -4.3329 -0.2769 35 1 -0.8199 -6.0960 -1.8505 36 1 -0.6399 -7.0031 -0.3290 37 1 0.7332 -7.6872 -2.9683 38 1 -0.6890 -8.5229 -2.3003 39 1 1.3781 -9.7670 -1.7636 40 1 0.6321 -9.1276 -0.2787 41 1 2.9771 -7.9102 -1.8098 42 1 3.0399 -8.6869 -0.2066 43 1 5.8283 -7.5078 1.6856 44 1 5.1738 -7.7076 0.0425 45 1 4.5517 -5.2754 0.0434 46 1 5.3376 -5.1081 1.6317 47 1 2.2540 -9.0296 1.8852 48 1 4.0320 -9.5184 1.9203 49 1 2.7216 -7.2058 3.5844 50 1 4.4997 -7.6942 3.6195 51 1 2.5281 -3.8638 0.9038 52 1 2.5584 -3.8515 -0.8816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670924056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:49 Heat of formation + Delta-G solvation = -31.914139 kcal Electronic energy + Delta-G solvation = -32459.625323 eV Core-core repulsion = 28374.963431 eV Total energy + Delta-G solvation = -4084.661892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.69318 -42.10198 -39.48649 -38.29449 -37.67851 -34.83001 -33.72241 -32.63462 -32.30936 -30.60140 -29.12451 -26.89943 -25.96419 -25.06323 -24.23006 -23.50432 -23.24133 -21.94439 -21.38863 -20.91887 -19.45667 -19.00797 -17.71167 -17.41259 -17.15449 -16.98871 -16.66337 -16.45228 -15.90333 -15.83589 -15.64123 -15.39336 -15.06969 -14.97939 -14.79544 -14.36680 -14.17711 -13.87948 -13.69178 -13.64158 -13.48166 -13.29781 -13.19416 -12.85586 -12.68621 -12.51518 -12.39780 -12.34975 -12.09475 -12.04736 -11.92790 -11.86427 -11.67549 -11.60998 -11.51467 -11.32416 -11.22281 -11.13155 -10.92906 -10.72515 -9.88429 -9.46790 -8.80228 -7.77584 -5.21228 1.40410 1.45174 1.51710 1.64655 1.98654 2.48017 2.66177 3.28046 3.31503 3.47848 3.72671 3.72994 3.77622 3.80666 3.87692 3.93131 4.02261 4.08542 4.14648 4.18938 4.25808 4.28248 4.37072 4.44245 4.49157 4.62715 4.63066 4.72745 4.74397 4.77899 4.82912 4.91384 4.95190 4.98216 5.00945 5.02476 5.03133 5.13232 5.16907 5.21236 5.23526 5.28647 5.29804 5.40653 5.50329 5.62206 5.65552 5.76005 5.84352 6.29987 6.55294 7.10593 7.36962 7.80451 8.46385 9.23977 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011205 B = 0.004332 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.209071 B = 6462.207883 C = 7989.511130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.628 5.628 10 C 0.157 3.843 11 C -0.129 4.129 12 C -0.070 4.070 13 H 0.085 0.915 14 C 0.163 3.837 15 H 0.060 0.940 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.127 4.127 19 C 0.097 3.903 20 N -0.602 5.602 21 C 0.524 3.476 22 O -0.546 6.546 23 C -0.170 4.170 24 C -0.089 4.089 25 C 0.058 3.942 26 F -0.227 7.227 27 C -0.128 4.128 28 C -0.153 4.153 29 C 0.151 3.849 30 H 0.247 0.753 31 H 0.071 0.929 32 H -0.026 1.026 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.138 0.862 49 H 0.079 0.921 50 H 0.121 0.879 51 H 0.042 0.958 52 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -27.809 -1.375 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.032 3.968 11 C -0.168 4.168 12 C -0.089 4.089 13 H 0.103 0.897 14 C 0.059 3.941 15 H 0.077 0.923 16 C -0.161 4.161 17 C -0.155 4.155 18 C -0.165 4.165 19 C -0.024 4.024 20 N -0.334 5.334 21 C 0.313 3.687 22 O -0.425 6.425 23 C -0.173 4.173 24 C -0.127 4.127 25 C 0.003 3.997 26 F -0.209 7.209 27 C -0.164 4.164 28 C -0.190 4.190 29 C 0.027 3.973 30 H 0.057 0.943 31 H 0.089 0.911 32 H -0.009 1.009 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.156 0.844 49 H 0.098 0.902 50 H 0.140 0.860 51 H 0.059 0.941 52 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 5.306 -27.080 -1.109 27.617 hybrid contribution 0.237 1.941 0.156 1.962 sum 5.543 -25.139 -0.953 25.760 Atomic orbital electron populations 1.70074 1.06168 1.24994 1.58719 1.25642 0.96708 1.00893 1.02767 0.85119 0.77195 0.78700 0.78136 1.20147 1.21263 1.20729 1.19375 0.90641 0.84301 1.42654 0.91238 1.44915 1.02817 1.01211 1.86422 1.21650 0.84211 0.95194 0.95737 1.22998 0.98248 0.95929 0.99585 1.22336 0.94211 0.93139 0.99178 0.89716 1.21092 0.90214 0.88931 0.93815 0.92253 1.21845 0.95667 0.97590 1.00995 1.21537 1.00612 0.95072 0.98239 1.21905 0.95096 0.98725 1.00799 1.22135 0.98262 0.82947 0.99054 1.48106 1.44066 1.20886 1.20376 1.20118 0.82558 0.84692 0.81327 1.90800 1.61775 1.26806 1.63076 1.21276 0.94521 1.01654 0.99855 1.21570 0.93412 0.93944 1.03727 1.22036 0.80665 0.99718 0.97282 1.92729 1.46180 1.97105 1.84862 1.23267 1.04034 0.89651 0.99476 1.23161 1.04338 1.01910 0.89625 1.21894 0.95104 0.84083 0.96210 0.94324 0.91055 1.00854 0.91875 0.90283 0.90642 0.92043 0.91558 0.90140 0.87971 0.91589 0.90963 0.87138 0.87393 0.88246 0.93297 0.91261 0.87907 0.84377 0.90233 0.86041 0.94110 0.99081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.77 10.09 21.65 0.22 -60.55 16 2 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 3 Si 0.98 49.20 29.55 68.60 2.03 51.23 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.24 -15.10 10.27 84.03 0.86 -14.24 16 8 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.63 -37.00 3.39 -691.99 -2.35 -39.35 16 10 C 0.16 8.76 5.89 86.86 0.51 9.27 16 11 C -0.13 -5.35 5.16 31.99 0.16 -5.18 16 12 C -0.07 -2.75 1.87 -9.60 -0.02 -2.77 16 13 H 0.08 3.66 6.04 -2.98 -0.02 3.64 16 14 C 0.16 4.71 2.47 44.83 0.11 4.82 16 15 H 0.06 1.85 7.82 -2.39 -0.02 1.83 16 16 C -0.12 -2.70 4.84 30.53 0.15 -2.55 16 17 C -0.12 -1.70 5.89 30.62 0.18 -1.52 16 18 C -0.13 -1.40 6.08 30.68 0.19 -1.22 16 19 C 0.10 1.37 6.22 86.36 0.54 1.91 16 20 N -0.60 -14.34 2.98 -795.81 -2.37 -16.71 16 21 C 0.52 14.55 4.82 87.66 0.42 14.97 16 22 O -0.55 -21.14 9.80 -3.03 -0.03 -21.17 16 23 C -0.17 -3.17 1.09 -52.90 -0.06 -3.23 16 24 C -0.09 -1.51 5.78 30.59 0.18 -1.33 16 25 C 0.06 1.54 7.18 71.98 0.52 2.06 16 26 F -0.23 -6.58 17.36 44.97 0.78 -5.80 16 27 C -0.13 -1.39 7.95 30.59 0.24 -1.15 16 28 C -0.15 -2.57 9.79 30.62 0.30 -2.27 16 29 C 0.15 7.47 5.83 86.73 0.51 7.97 16 30 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.07 4.39 5.87 -2.39 -0.01 4.38 16 32 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 33 H 0.06 2.50 7.84 -2.39 -0.02 2.48 16 34 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.08 1.71 7.14 -2.39 -0.02 1.69 16 36 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.11 1.08 4.72 -2.39 -0.01 1.07 16 43 H 0.11 1.35 7.95 -2.39 -0.02 1.33 16 44 H 0.10 1.32 8.01 -2.39 -0.02 1.30 16 45 H 0.05 1.57 6.97 -2.39 -0.02 1.55 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.12 1.56 8.09 -2.39 -0.02 1.54 16 51 H 0.04 2.19 5.49 -18.65 -0.10 2.09 16 52 H -0.01 -0.43 7.61 -2.39 -0.02 -0.45 16 Total: -1.00 -80.56 388.48 4.34 -76.22 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.80 Total: 14.30 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 5.26 Total: 1.82 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -4.50 Total: -116.61 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.03 Total: -21.17 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.78 Total: -5.80 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.03 Total: 51.23 kcal Total: -80.56 4.34 -76.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670924056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.311 kcal (2) G-P(sol) polarization free energy of solvation -80.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds