Wall clock time and date at job start Tue Mar 31 2020 21:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99953 * 2 1 4 4 H 1.48498 * 109.47091 * 240.00055 * 3 2 1 5 5 H 1.48509 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47112 * 119.99679 * 3 2 1 7 7 C 1.38812 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00167 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99717 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.65054 * 359.94606 * 9 7 2 11 11 C 1.54913 * 104.82971 * 204.17546 * 10 9 7 12 12 C 1.55161 * 101.58474 * 322.98963 * 11 10 9 13 13 H 1.08993 * 110.71606 * 277.14271 * 12 11 10 14 14 C 1.52998 * 110.72216 * 154.04378 * 12 11 10 15 15 H 1.08994 * 109.58258 * 56.28373 * 14 12 11 16 16 C 1.53197 * 109.58413 * 295.86100 * 14 12 11 17 17 C 1.53042 * 109.30994 * 185.57786 * 16 14 12 18 18 C 1.53046 * 109.53665 * 61.36378 * 17 16 14 19 19 C 1.53186 * 109.31374 * 298.63400 * 18 17 16 20 20 N 1.46924 * 108.77880 * 54.63579 * 19 18 17 21 21 C 1.34780 * 120.63320 * 126.40892 * 20 19 18 22 22 O 1.21285 * 119.99769 * 184.36265 * 21 20 19 23 23 C 1.50700 * 119.99601 * 4.36746 * 21 20 19 24 24 C 1.52998 * 115.55035 * 284.28308 * 23 21 20 25 25 C 1.53003 * 109.47071 * 303.73160 * 24 23 21 26 26 F 1.39901 * 109.47378 * 185.09066 * 25 24 23 27 27 C 1.52998 * 117.49662 * 138.61621 * 23 21 20 28 28 C 1.52999 * 117.50098 * 69.95823 * 23 21 20 29 29 C 1.47024 * 125.64829 * 180.02562 * 9 7 2 30 30 H 0.97004 * 120.00466 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.36547 * 85.33862 * 10 9 7 32 32 H 1.08997 * 110.36548 * 323.01004 * 10 9 7 33 33 H 1.09002 * 111.00231 * 204.91598 * 11 10 9 34 34 H 1.08998 * 111.00648 * 81.06304 * 11 10 9 35 35 H 1.08998 * 109.49504 * 305.52872 * 16 14 12 36 36 H 1.08997 * 109.49869 * 65.62823 * 16 14 12 37 37 H 1.09004 * 109.45959 * 301.34796 * 17 16 14 38 38 H 1.09000 * 109.46292 * 181.38368 * 17 16 14 39 39 H 1.09004 * 109.49150 * 178.68177 * 18 17 16 40 40 H 1.09000 * 109.49784 * 58.59097 * 18 17 16 41 41 H 1.09001 * 109.59062 * 294.85228 * 19 18 17 42 42 H 1.08998 * 109.70411 * 174.49506 * 19 18 17 43 43 H 1.09000 * 109.47005 * 63.72610 * 24 23 21 44 44 H 1.08993 * 109.47113 * 183.73280 * 24 23 21 45 45 H 1.09004 * 109.47147 * 305.08825 * 25 24 23 46 46 H 1.09003 * 109.47431 * 65.09310 * 25 24 23 47 47 H 1.09003 * 117.49972 * 0.02562 * 27 23 21 48 48 H 1.08999 * 117.49901 * 145.01344 * 27 23 21 49 49 H 1.09000 * 117.49814 * 214.97957 * 28 23 21 50 50 H 1.09002 * 117.49853 * 359.96970 * 28 23 21 51 51 H 1.09001 * 109.88204 * 59.46875 * 29 9 7 52 52 H 1.09001 * 110.00934 * 298.38629 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1416 -2.5331 0.0011 11 6 -0.4014 -3.9319 0.6142 12 6 0.7785 -4.7525 0.0293 13 1 0.5455 -5.0987 -0.9776 14 6 1.1207 -5.9332 0.9401 15 1 0.2340 -6.5496 1.0878 16 6 1.6181 -5.4116 2.2920 17 6 2.0893 -6.5903 3.1469 18 6 3.2504 -7.2993 2.4457 19 6 2.7714 -7.8422 1.0957 20 7 2.1837 -6.7388 0.3238 21 6 2.6112 -6.4708 -0.9260 22 8 2.1749 -5.5096 -1.5231 23 6 3.6314 -7.3658 -1.5814 24 6 5.0705 -7.1961 -1.0904 25 6 5.4986 -5.7371 -1.2602 26 9 6.8493 -5.6048 -0.9208 27 6 3.4246 -7.7098 -3.0578 28 6 3.1831 -8.7724 -1.9828 29 6 1.9317 -3.7275 0.0016 30 1 -0.4851 0.8400 0.0004 31 1 -0.5276 -2.4876 -1.0171 32 1 -0.5991 -1.7584 0.6163 33 1 -1.3589 -4.3326 0.2813 34 1 -0.3513 -3.8969 1.7024 35 1 2.4477 -4.7228 2.1331 36 1 0.8068 -4.8932 2.8028 37 1 1.2659 -7.2912 3.2845 38 1 2.4209 -6.2245 4.1186 39 1 3.6007 -8.1243 3.0660 40 1 4.0647 -6.5926 2.2855 41 1 2.0202 -8.6150 1.2583 42 1 3.6152 -8.2622 0.5482 43 1 5.1300 -7.4720 -0.0375 44 1 5.7310 -7.8387 -1.6723 45 1 5.3533 -5.4341 -2.2972 46 1 4.8966 -5.1035 -0.6088 47 1 2.5509 -7.2885 -3.5552 48 1 4.3138 -7.8156 -3.6792 49 1 3.9135 -9.5770 -1.8974 50 1 2.1504 -9.0508 -1.7725 51 1 2.5583 -3.8501 0.8851 52 1 2.5298 -3.8669 -0.8989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670924057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:53 Heat of formation + Delta-G solvation = -26.501244 kcal Electronic energy + Delta-G solvation = -32627.346514 eV Core-core repulsion = 28542.919343 eV Total energy + Delta-G solvation = -4084.427171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -48.67728 -42.11619 -39.58016 -38.16713 -37.68398 -34.83420 -33.69951 -32.61068 -32.17860 -30.75216 -28.76693 -27.03729 -26.00796 -25.25101 -24.31192 -23.51267 -23.09410 -22.11985 -21.46808 -20.74858 -19.10779 -18.92050 -17.61497 -17.35890 -17.17860 -16.93633 -16.79294 -16.41870 -16.22631 -15.84835 -15.75433 -15.39521 -15.08499 -14.93715 -14.72446 -14.55705 -14.19987 -13.78690 -13.61044 -13.56852 -13.38708 -13.26893 -13.11841 -12.88468 -12.70810 -12.56999 -12.36559 -12.29000 -12.05747 -12.00459 -11.91254 -11.87576 -11.63766 -11.49991 -11.42120 -11.34785 -11.27010 -11.11802 -10.96879 -10.72611 -9.88669 -9.40018 -8.76164 -7.76849 -5.19636 1.40073 1.44629 1.51116 1.66546 2.01481 2.48254 2.66571 3.29583 3.36191 3.49650 3.73018 3.75727 3.76212 3.86868 3.92438 3.95473 3.99191 4.07794 4.10677 4.17775 4.24668 4.31152 4.33744 4.40568 4.47834 4.60749 4.67632 4.74365 4.77664 4.78598 4.85287 4.89708 4.91965 4.98415 5.03211 5.04328 5.06326 5.13960 5.19190 5.24992 5.25356 5.30147 5.34773 5.41112 5.54279 5.63924 5.67079 5.77834 5.85938 6.30945 6.56906 7.11720 7.38173 7.82122 8.48354 9.24803 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011345 B = 0.004279 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.372944 B = 6542.558055 C = 7395.375888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.626 5.626 10 C 0.159 3.841 11 C -0.135 4.135 12 C -0.077 4.077 13 H 0.086 0.914 14 C 0.167 3.833 15 H 0.093 0.907 16 C -0.137 4.137 17 C -0.112 4.112 18 C -0.133 4.133 19 C 0.103 3.897 20 N -0.600 5.600 21 C 0.524 3.476 22 O -0.548 6.548 23 C -0.168 4.168 24 C -0.094 4.094 25 C 0.060 3.940 26 F -0.228 7.228 27 C -0.155 4.155 28 C -0.123 4.123 29 C 0.150 3.850 30 H 0.247 0.753 31 H -0.029 1.029 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.046 0.954 47 H 0.079 0.921 48 H 0.120 0.880 49 H 0.137 0.863 50 H 0.101 0.899 51 H 0.014 0.986 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -26.778 2.898 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.034 3.966 11 C -0.174 4.174 12 C -0.096 4.096 13 H 0.104 0.896 14 C 0.063 3.937 15 H 0.111 0.889 16 C -0.175 4.175 17 C -0.149 4.149 18 C -0.171 4.171 19 C -0.019 4.019 20 N -0.333 5.333 21 C 0.313 3.687 22 O -0.427 6.427 23 C -0.172 4.172 24 C -0.131 4.131 25 C 0.004 3.996 26 F -0.209 7.209 27 C -0.192 4.192 28 C -0.160 4.160 29 C 0.026 3.974 30 H 0.056 0.944 31 H -0.012 1.012 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.130 0.870 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.138 0.862 49 H 0.155 0.845 50 H 0.119 0.881 51 H 0.032 0.968 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.035 -26.075 2.605 27.133 hybrid contribution 0.190 2.026 -0.298 2.056 sum 7.225 -24.049 2.307 25.217 Atomic orbital electron populations 1.70068 1.06153 1.24923 1.58850 1.25613 0.96667 1.00825 1.02936 0.85146 0.77202 0.78868 0.78099 1.20866 1.21340 1.20115 1.19353 0.90570 0.84339 1.42427 0.91320 1.44875 1.02697 1.01231 1.86378 1.21618 0.84344 0.95103 0.95527 1.23077 0.98187 0.96110 1.00034 1.22460 0.94386 0.93661 0.99101 0.89637 1.21114 0.89801 0.90865 0.91874 0.88936 1.22104 1.01206 0.98835 0.95338 1.21500 0.98951 0.96438 0.98061 1.21942 0.97663 1.01117 0.96411 1.22102 0.99761 0.87978 0.92025 1.48125 1.37792 1.33305 1.14067 1.20132 0.82278 0.84380 0.81860 1.90796 1.57727 1.28731 1.65439 1.21222 0.94584 1.00818 1.00554 1.21658 0.92387 0.94862 1.04202 1.21983 0.76449 0.99403 1.01718 1.92731 1.36456 1.97296 1.94405 1.23106 1.04185 1.02177 0.89761 1.23244 1.03758 0.89677 0.99328 1.21894 0.95081 0.83780 0.96604 0.94381 1.01157 0.91086 0.90554 0.91321 0.93485 0.91464 0.89960 0.91462 0.87684 0.93384 0.89052 0.87622 0.88656 0.86993 0.90730 0.93564 0.90195 0.86151 0.84476 0.88075 0.96819 0.95653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.72 10.09 21.65 0.22 -60.50 16 2 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 3 Si 0.98 49.14 29.55 68.60 2.03 51.16 16 4 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.24 -14.82 10.27 84.03 0.86 -13.96 16 8 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.63 -36.49 3.39 -691.99 -2.35 -38.84 16 10 C 0.16 8.85 5.89 86.86 0.51 9.36 16 11 C -0.14 -5.61 6.43 31.99 0.21 -5.40 16 12 C -0.08 -3.02 2.06 -9.61 -0.02 -3.04 16 13 H 0.09 3.70 5.90 -8.97 -0.05 3.65 16 14 C 0.17 4.65 2.76 44.98 0.12 4.77 16 15 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.14 -3.72 4.79 30.67 0.15 -3.58 16 17 C -0.11 -1.98 5.88 30.62 0.18 -1.80 16 18 C -0.13 -1.90 6.08 30.67 0.19 -1.71 16 19 C 0.10 1.40 5.94 86.36 0.51 1.91 16 20 N -0.60 -13.98 2.96 -795.03 -2.35 -16.33 16 21 C 0.52 14.42 5.62 87.66 0.49 14.91 16 22 O -0.55 -21.17 9.92 -3.05 -0.03 -21.20 16 23 C -0.17 -3.09 0.83 -52.93 -0.04 -3.14 16 24 C -0.09 -1.53 5.32 30.59 0.16 -1.37 16 25 C 0.06 1.50 7.23 71.98 0.52 2.02 16 26 F -0.23 -6.25 17.36 44.97 0.78 -5.47 16 27 C -0.15 -2.62 9.81 30.62 0.30 -2.32 16 28 C -0.12 -1.36 9.20 30.62 0.28 -1.08 16 29 C 0.15 7.28 5.63 86.73 0.49 7.76 16 30 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 31 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 32 H 0.07 4.36 5.87 -2.39 -0.01 4.35 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.07 2.68 6.26 -2.39 -0.01 2.67 16 35 H 0.05 1.62 5.51 -2.39 -0.01 1.61 16 36 H 0.07 1.94 6.57 -2.39 -0.02 1.93 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.11 1.07 4.25 -2.39 -0.01 1.06 16 43 H 0.10 1.31 6.41 -2.39 -0.02 1.30 16 44 H 0.11 1.25 8.10 -2.39 -0.02 1.23 16 45 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 46 H 0.05 1.45 7.66 -2.39 -0.02 1.43 16 47 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 48 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.01 0.68 5.12 -2.39 -0.01 0.67 16 52 H 0.03 1.37 5.64 -3.60 -0.02 1.35 16 Total: -1.00 -80.51 383.12 4.54 -75.97 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.87 Total: 15.59 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.38 Total: -0.38 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.48 Total: -115.67 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.03 Total: -21.20 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.78 Total: -5.47 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.03 Total: 51.16 kcal Total: -80.51 4.54 -75.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670924057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.464 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds