Wall clock time and date at job start Tue Mar 31 2020 21:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00153 * 2 1 4 4 H 1.48492 * 109.46914 * 264.99184 * 3 2 1 5 5 H 1.48502 * 109.47142 * 144.98739 * 3 2 1 6 6 H 1.48501 * 109.46807 * 24.98816 * 3 2 1 7 7 C 1.38809 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99851 * 187.91294 * 7 2 1 9 9 N 1.36935 * 120.00460 * 7.92016 * 7 2 1 10 10 C 1.47020 * 125.64701 * 6.11692 * 9 7 2 11 11 C 1.54326 * 107.27194 * 181.02841 * 10 9 7 12 12 C 1.55161 * 102.94178 * 22.19116 * 11 10 9 13 13 H 1.08995 * 111.00030 * 82.61491 * 12 11 10 14 14 C 1.53002 * 111.00079 * 206.42707 * 12 11 10 15 15 H 1.08997 * 109.58550 * 301.38071 * 14 12 11 16 16 C 1.53188 * 109.58654 * 61.66770 * 14 12 11 17 17 C 1.53042 * 109.31136 * 174.42155 * 16 14 12 18 18 C 1.53044 * 109.53602 * 298.63619 * 17 16 14 19 19 C 1.53187 * 109.31446 * 61.36298 * 18 17 16 20 20 N 1.46923 * 109.58129 * 180.95810 * 14 12 11 21 21 C 1.34775 * 120.63514 * 6.57953 * 20 14 12 22 22 O 1.21281 * 119.99533 * 6.82919 * 21 20 14 23 23 C 1.50701 * 120.00101 * 186.82476 * 21 20 14 24 24 C 1.52995 * 115.55447 * 280.03361 * 23 21 20 25 25 C 1.53001 * 109.47079 * 302.32912 * 24 23 21 26 26 F 1.39895 * 109.47276 * 184.41106 * 25 24 23 27 27 C 1.53005 * 117.49413 * 134.32472 * 23 21 20 28 28 C 1.52998 * 59.99975 * 252.51364 * 27 23 21 29 29 C 1.47429 * 125.64905 * 185.81377 * 9 7 2 30 30 H 0.96999 * 119.99519 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.88158 * 300.44132 * 10 9 7 32 32 H 1.08998 * 109.88080 * 61.45381 * 10 9 7 33 33 H 1.09000 * 110.72449 * 140.55707 * 11 10 9 34 34 H 1.09001 * 110.71639 * 263.64916 * 11 10 9 35 35 H 1.08999 * 109.50180 * 294.36652 * 16 14 12 36 36 H 1.08993 * 109.49983 * 54.43881 * 16 14 12 37 37 H 1.09003 * 109.46114 * 58.65029 * 17 16 14 38 38 H 1.08997 * 109.46664 * 178.61358 * 17 16 14 39 39 H 1.09001 * 109.49493 * 181.31604 * 18 17 16 40 40 H 1.08997 * 109.49626 * 301.37822 * 18 17 16 41 41 H 1.09001 * 109.58526 * 65.15664 * 19 18 17 42 42 H 1.08998 * 109.58685 * 185.43340 * 19 18 17 43 43 H 1.08997 * 109.46792 * 62.32435 * 24 23 21 44 44 H 1.08993 * 109.47581 * 182.32865 * 24 23 21 45 45 H 1.09002 * 109.46859 * 304.41362 * 25 24 23 46 46 H 1.09000 * 109.47336 * 64.41025 * 25 24 23 47 47 H 1.09001 * 117.50030 * 0.02562 * 27 23 21 48 48 H 1.08996 * 117.49669 * 145.02470 * 27 23 21 49 49 H 1.09002 * 117.49790 * 252.51219 * 28 27 23 50 50 H 1.09005 * 117.50263 * 107.48915 * 28 27 23 51 51 H 1.08993 * 110.36557 * 274.74393 * 29 9 7 52 52 H 1.08994 * 110.36591 * 37.06940 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6036 1.9852 -1.3947 5 1 3.4909 1.4730 0.8033 6 1 1.3988 2.6809 0.5915 7 6 2.0102 -1.2022 0.0005 8 1 3.0826 -1.2066 0.1293 9 7 1.3354 -2.3825 -0.1623 10 6 -0.0956 -2.5156 -0.4725 11 6 -0.4122 -4.0247 -0.5360 12 6 0.7331 -4.6555 0.2992 13 1 0.5089 -4.6125 1.3650 14 6 1.0059 -6.0946 -0.1432 15 1 0.0990 -6.6890 -0.0326 16 6 1.4516 -6.1056 -1.6087 17 6 1.8559 -7.5277 -2.0042 18 6 3.0319 -7.9850 -1.1381 19 6 2.6041 -7.9952 0.3328 20 7 2.0779 -6.6685 0.6815 21 6 2.5696 -5.9906 1.7375 22 8 2.0464 -4.9548 2.0901 23 6 3.7694 -6.5197 2.4802 24 6 3.4834 -7.6367 3.4858 25 6 2.4639 -7.1467 4.5161 26 9 2.2777 -8.1310 5.4926 27 6 4.8817 -5.5269 2.8239 28 6 5.1003 -6.5709 1.7270 29 6 1.9247 -3.7301 -0.0619 30 1 -0.4849 0.8401 0.0004 31 1 -0.6900 -2.0448 0.3107 32 1 -0.3117 -2.0483 -1.4332 33 1 -1.3810 -4.2349 -0.0828 34 1 -0.3842 -4.3815 -1.5656 35 1 0.6293 -5.7719 -2.2417 36 1 2.3027 -5.4365 -1.7352 37 1 1.0113 -8.2003 -1.8541 38 1 2.1501 -7.5432 -3.0536 39 1 3.3344 -8.9889 -1.4361 40 1 3.8687 -7.2989 -1.2693 41 1 1.8289 -8.7467 0.4826 42 1 3.4637 -8.2266 0.9617 43 1 3.0817 -8.5036 2.9612 44 1 4.4073 -7.9147 3.9927 45 1 2.8317 -6.2342 4.9854 46 1 1.5150 -6.9430 4.0199 47 1 4.7454 -4.4910 2.5133 48 1 5.4098 -5.6693 3.7667 49 1 5.7721 -7.4002 1.9482 50 1 5.1079 -6.2220 0.6943 51 1 2.3616 -4.0251 -1.0159 52 1 2.6776 -3.7572 0.7257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670924058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:56 Heat of formation + Delta-G solvation = -34.603622 kcal Electronic energy + Delta-G solvation = -32423.314373 eV Core-core repulsion = 28338.535857 eV Total energy + Delta-G solvation = -4084.778516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -48.62553 -42.09921 -39.56026 -38.16270 -37.71415 -34.82391 -33.67820 -32.57182 -32.19647 -30.72622 -28.75488 -27.08167 -26.01751 -25.22232 -24.30911 -23.46568 -23.15426 -22.15851 -21.37096 -20.75489 -19.16978 -18.91721 -17.68578 -17.26520 -17.03698 -16.83601 -16.75041 -16.56832 -16.02197 -15.89200 -15.72188 -15.42697 -15.07885 -14.91061 -14.71561 -14.53080 -14.06978 -13.96798 -13.87778 -13.63479 -13.43690 -13.10208 -13.03443 -12.80357 -12.71099 -12.57228 -12.40802 -12.31081 -12.06760 -11.94922 -11.87486 -11.83486 -11.74475 -11.56765 -11.43549 -11.41768 -11.21472 -11.17027 -10.97484 -10.72063 -9.78646 -9.45419 -8.79358 -7.82728 -5.20260 1.39276 1.43302 1.51294 1.66624 2.00573 2.48129 2.63329 3.30054 3.36659 3.48187 3.70687 3.75936 3.77975 3.90632 3.93378 3.97779 4.00275 4.07415 4.13244 4.20467 4.24185 4.30137 4.34480 4.40010 4.50342 4.56543 4.67565 4.73589 4.76743 4.78943 4.87963 4.91068 4.92675 4.98650 5.01879 5.05680 5.07461 5.16226 5.17253 5.20714 5.23129 5.30382 5.31013 5.39949 5.54351 5.59908 5.62634 5.78405 5.88749 6.22507 6.56516 7.10054 7.37024 7.80389 8.47123 9.25076 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.004128 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.876678 B = 6780.945451 C = 7862.841911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.282 1.282 5 H -0.271 1.271 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.624 5.624 10 C 0.181 3.819 11 C -0.133 4.133 12 C -0.088 4.088 13 H 0.090 0.910 14 C 0.166 3.834 15 H 0.086 0.914 16 C -0.136 4.136 17 C -0.113 4.113 18 C -0.130 4.130 19 C 0.101 3.899 20 N -0.600 5.600 21 C 0.531 3.469 22 O -0.550 6.550 23 C -0.160 4.160 24 C -0.092 4.092 25 C 0.060 3.940 26 F -0.227 7.227 27 C -0.160 4.160 28 C -0.130 4.130 29 C 0.151 3.849 30 H 0.246 0.754 31 H 0.017 0.983 32 H -0.010 1.010 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.125 0.875 49 H 0.141 0.859 50 H 0.090 0.910 51 H 0.017 0.983 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 -25.886 0.809 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.209 1.209 5 H -0.196 1.196 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.056 3.944 11 C -0.172 4.172 12 C -0.108 4.108 13 H 0.108 0.892 14 C 0.063 3.937 15 H 0.104 0.896 16 C -0.174 4.174 17 C -0.151 4.151 18 C -0.168 4.168 19 C -0.021 4.021 20 N -0.333 5.333 21 C 0.319 3.681 22 O -0.429 6.429 23 C -0.163 4.163 24 C -0.130 4.130 25 C 0.005 3.995 26 F -0.208 7.208 27 C -0.197 4.197 28 C -0.167 4.167 29 C 0.027 3.973 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.008 0.992 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.128 0.872 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.143 0.857 49 H 0.159 0.841 50 H 0.108 0.892 51 H 0.034 0.966 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.810 -25.173 1.030 26.690 hybrid contribution -0.166 1.967 -0.005 1.974 sum 8.644 -23.206 1.025 24.785 Atomic orbital electron populations 1.70216 1.06370 1.25082 1.58372 1.25672 0.96594 1.01034 1.02886 0.85098 0.77517 0.79004 0.77785 1.20868 1.19634 1.21779 1.19371 0.91105 0.84481 1.41930 0.91099 1.44774 1.06283 1.01393 1.82499 1.20911 0.85029 0.92394 0.96051 1.22922 0.98646 0.95284 1.00321 1.22799 0.94700 0.92875 1.00388 0.89234 1.21087 0.89809 0.92334 0.90484 0.89571 1.22102 1.01692 0.98883 0.94698 1.21512 0.99028 0.94489 1.00049 1.21919 0.97852 1.03123 0.93948 1.22103 1.00549 0.82234 0.97184 1.48129 1.37367 1.19713 1.28080 1.20113 0.84312 0.83146 0.80493 1.90808 1.59822 1.25184 1.67073 1.21250 0.89441 1.02636 1.03006 1.21615 1.00974 0.96014 0.94397 1.21964 1.00599 0.89098 0.87800 1.92735 1.96854 1.65572 1.65686 1.23065 0.99475 0.95222 1.01978 1.23219 0.94724 1.01855 0.96903 1.22018 0.95300 0.84176 0.95820 0.94519 0.96442 0.99201 0.91028 0.90534 0.90931 0.92886 0.90439 0.90981 0.87875 0.92524 0.89666 0.87606 0.88269 0.87250 0.90801 0.92328 0.91475 0.85689 0.84065 0.89151 0.96595 0.95057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.92 10.47 21.65 0.23 -61.70 16 2 C -0.07 -4.29 5.45 84.86 0.46 -3.83 16 3 Si 0.98 49.27 29.56 68.60 2.03 51.30 16 4 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 7 C -0.24 -14.94 10.26 84.03 0.86 -14.08 16 8 H 0.07 4.30 7.84 -2.91 -0.02 4.28 16 9 N -0.62 -36.18 3.39 -691.54 -2.35 -38.52 16 10 C 0.18 10.04 5.46 86.73 0.47 10.51 16 11 C -0.13 -5.43 6.31 31.79 0.20 -5.23 16 12 C -0.09 -3.46 2.13 -9.32 -0.02 -3.48 16 13 H 0.09 4.09 5.69 -20.70 -0.12 3.97 16 14 C 0.17 4.52 2.80 44.97 0.13 4.64 16 15 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 16 C -0.14 -3.28 4.72 30.67 0.14 -3.13 16 17 C -0.11 -1.72 5.88 30.62 0.18 -1.54 16 18 C -0.13 -1.57 6.08 30.67 0.19 -1.39 16 19 C 0.10 1.33 5.83 86.36 0.50 1.84 16 20 N -0.60 -13.90 2.96 -795.05 -2.35 -16.25 16 21 C 0.53 14.97 5.15 87.66 0.45 15.42 16 22 O -0.55 -21.97 10.75 -3.03 -0.03 -22.00 16 23 C -0.16 -3.11 0.80 -52.93 -0.04 -3.16 16 24 C -0.09 -1.34 5.36 30.59 0.16 -1.18 16 25 C 0.06 1.25 7.26 71.98 0.52 1.78 16 26 F -0.23 -5.17 17.36 44.97 0.78 -4.39 16 27 C -0.16 -3.32 9.86 30.60 0.30 -3.01 16 28 C -0.13 -1.91 8.68 30.59 0.27 -1.64 16 29 C 0.15 7.11 5.69 86.93 0.49 7.60 16 30 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.02 1.10 6.86 -2.38 -0.02 1.08 16 32 H -0.01 -0.61 7.99 -2.39 -0.02 -0.63 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.08 2.74 6.13 -2.39 -0.01 2.72 16 35 H 0.07 1.80 6.50 -2.39 -0.02 1.78 16 36 H 0.05 1.57 5.66 -2.39 -0.01 1.56 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 1.03 4.55 -2.39 -0.01 1.02 16 43 H 0.10 1.10 6.97 -2.39 -0.02 1.08 16 44 H 0.11 1.11 8.11 -2.39 -0.02 1.09 16 45 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 1.41 7.66 -2.39 -0.02 1.40 16 47 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 51 H 0.02 0.75 5.37 -2.39 -0.01 0.74 16 52 H 0.03 1.59 5.71 -2.39 -0.01 1.57 16 Total: -1.00 -81.72 384.61 4.39 -77.34 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.81 Total: 14.11 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.28 Total: 0.12 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -4.47 Total: -116.47 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.03 Total: -22.00 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.03 Total: 51.30 kcal Total: -81.72 4.39 -77.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670924058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.733 kcal (2) G-P(sol) polarization free energy of solvation -81.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds