Wall clock time and date at job start Tue Mar 31 2020 21:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34772 * 120.00246 * 2 1 4 4 O 1.21587 * 119.99751 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00031 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99688 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46847 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.47201 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99853 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00042 * 180.02562 * 8 7 6 11 11 C 1.48239 * 125.78763 * 0.03117 * 10 8 7 12 12 C 1.52327 * 105.86948 * 176.82197 * 11 10 8 13 13 H 1.08997 * 109.88062 * 272.31862 * 12 11 10 14 14 C 1.51438 * 117.44893 * 145.79131 * 12 11 10 15 15 C 1.53842 * 107.04261 * 181.23392 * 14 12 11 16 16 C 1.52525 * 111.66329 * 57.19868 * 15 14 12 17 17 C 1.53812 * 111.70240 * 305.95905 * 16 15 14 18 18 H 1.09001 * 109.94814 * 176.91415 * 17 16 15 19 19 N 1.46504 * 109.94693 * 298.07594 * 17 16 15 20 20 C 1.36936 * 120.00017 * 208.94472 * 19 17 16 21 21 H 1.08004 * 120.00192 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99863 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00002 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00256 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46811 * 90.00317 * 24 22 20 26 26 H 1.48495 * 109.47206 * 210.00237 * 24 22 20 27 27 H 1.48506 * 109.47074 * 330.00614 * 24 22 20 28 28 C 1.51298 * 107.43847 * 57.28797 * 17 16 15 29 29 H 1.08999 * 109.98063 * 55.69495 * 28 17 16 30 30 C 1.48664 * 125.78055 * 179.71847 * 10 8 7 31 31 H 1.09010 * 109.47457 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47404 * 300.00115 * 1 2 3 33 33 H 1.08993 * 109.47428 * 59.99786 * 1 2 3 34 34 H 0.97006 * 119.99710 * 180.02562 * 2 1 3 35 35 H 0.96993 * 120.00135 * 0.02562 * 5 3 2 36 36 H 1.09002 * 109.47318 * 300.00142 * 6 5 3 37 37 H 1.08999 * 109.47373 * 60.00421 * 6 5 3 38 38 H 1.08992 * 109.47389 * 300.00182 * 7 6 5 39 39 H 1.09000 * 109.47207 * 60.00316 * 7 6 5 40 40 H 1.09010 * 110.16691 * 295.91971 * 11 10 8 41 41 H 1.08995 * 110.17308 * 57.63924 * 11 10 8 42 42 H 1.09003 * 109.93999 * 300.61572 * 14 12 11 43 43 H 1.09001 * 109.94193 * 61.84681 * 14 12 11 44 44 H 1.09003 * 109.04281 * 177.75982 * 15 14 12 45 45 H 1.09000 * 109.03961 * 296.70826 * 15 14 12 46 46 H 1.08997 * 109.03521 * 66.53302 * 16 15 14 47 47 H 1.08999 * 109.03245 * 185.46811 * 16 15 14 48 48 H 0.96997 * 119.99902 * 28.93434 * 19 17 16 49 49 H 0.96997 * 120.00193 * 179.97438 * 23 22 20 50 50 H 1.08994 * 110.62999 * 274.10194 * 30 10 8 51 51 H 1.08999 * 110.62712 * 37.12956 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2191 2.4358 0.0000 7 6 5.7234 2.1562 0.0014 8 6 6.4769 3.4613 0.0002 9 8 5.8705 4.5116 -0.0012 10 7 7.8247 3.4612 0.0006 11 6 8.6915 2.2587 0.0015 12 6 10.1219 2.7762 -0.0796 13 1 10.4100 2.9073 -1.1226 14 6 11.1901 1.9936 0.6552 15 6 12.5204 2.7359 0.4410 16 6 12.4423 4.1815 0.9212 17 6 11.2619 4.9308 0.2800 18 1 11.2000 5.9416 0.6831 19 7 11.4334 4.9827 -1.1740 20 6 10.9084 6.0262 -1.8886 21 1 10.3675 6.8108 -1.3803 22 6 11.0714 6.0756 -3.2662 23 7 10.5664 7.0783 -3.9531 24 14 12.0074 4.7190 -4.1453 25 1 11.0631 3.6449 -4.5450 26 1 12.6652 5.2751 -5.3549 27 1 13.0380 4.1584 -3.2348 28 6 10.0018 4.1634 0.6154 29 1 9.9132 4.0466 1.6954 30 6 8.6939 4.6672 -0.0064 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.9500 -0.8401 -0.0004 35 1 3.9716 0.3271 0.0005 36 1 3.9561 3.0068 -0.8905 37 1 3.9555 3.0080 0.8895 38 1 5.9860 1.5854 0.8920 39 1 5.9874 1.5839 -0.8879 40 1 8.5482 1.6928 0.9221 41 1 8.4674 1.6331 -0.8624 42 1 10.9548 1.9517 1.7187 43 1 11.2577 0.9846 0.2485 44 1 13.3078 2.2206 0.9911 45 1 12.7652 2.7278 -0.6211 46 1 12.3226 4.1903 2.0045 47 1 13.3693 4.6928 0.6620 48 1 11.9189 4.2779 -1.6305 49 1 10.6805 7.1131 -4.9157 50 1 8.8596 5.0153 -1.0259 51 1 8.2585 5.4580 0.6044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676838934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:05 Heat of formation + Delta-G solvation = -79.139067 kcal Electronic energy + Delta-G solvation = -30276.862407 eV Core-core repulsion = 26210.072650 eV Total energy + Delta-G solvation = -4066.789756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.63089 -41.01713 -39.97778 -36.95627 -36.36704 -35.58675 -35.39006 -33.31384 -32.51938 -31.28367 -30.88109 -28.34549 -27.56113 -26.08919 -25.00545 -23.84922 -22.26803 -22.08981 -22.01536 -20.48824 -20.08122 -19.64037 -19.40617 -18.14079 -17.35509 -17.09534 -16.84663 -16.60368 -16.35921 -16.02475 -15.81447 -15.55775 -15.39358 -15.15841 -14.88762 -14.72386 -14.41566 -14.32463 -13.91964 -13.78517 -13.60206 -13.44588 -13.24355 -13.02842 -12.91933 -12.85639 -12.70998 -12.60723 -12.50815 -12.25062 -12.09257 -11.83299 -11.65128 -11.54959 -11.36172 -11.17537 -10.94309 -10.90108 -10.59781 -10.47768 -9.82926 -9.60716 -9.25293 -7.98424 -5.29780 1.33937 1.38685 1.46365 1.54820 1.62908 2.09776 2.11559 2.49479 3.27938 3.32676 3.46713 3.61782 3.65253 3.77132 3.94681 3.96137 4.05631 4.27333 4.38315 4.42254 4.46495 4.47749 4.53866 4.64415 4.65898 4.67180 4.71024 4.77176 4.80466 4.88100 4.90199 4.95844 4.98546 5.11167 5.13656 5.20897 5.28825 5.37266 5.40241 5.42833 5.47669 5.52110 5.55217 5.71382 5.83677 5.99447 6.25617 6.59619 7.10835 7.13233 7.15107 7.56200 7.89983 8.09186 9.23883 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.002577 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.163039 B =10863.814693 C =11781.906477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.734 5.734 3 C 0.691 3.309 4 O -0.646 6.646 5 N -0.726 5.726 6 C 0.161 3.839 7 C -0.124 4.124 8 C 0.515 3.485 9 O -0.601 6.601 10 N -0.618 5.618 11 C 0.112 3.888 12 C -0.103 4.103 13 H 0.059 0.941 14 C -0.088 4.088 15 C -0.117 4.117 16 C -0.117 4.117 17 C 0.180 3.820 18 H 0.039 0.961 19 N -0.739 5.739 20 C -0.209 4.209 21 H 0.050 0.950 22 C -0.071 4.071 23 N -0.990 5.990 24 Si 0.950 3.050 25 H -0.280 1.280 26 H -0.304 1.304 27 H -0.245 1.245 28 C -0.108 4.108 29 H 0.097 0.903 30 C 0.116 3.884 31 H 0.118 0.882 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.418 0.582 35 H 0.419 0.581 36 H 0.040 0.960 37 H 0.050 0.950 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.039 0.961 46 H 0.088 0.912 47 H 0.054 0.946 48 H 0.367 0.633 49 H 0.253 0.747 50 H 0.052 0.948 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 -27.411 14.091 31.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.390 5.390 3 C 0.390 3.610 4 O -0.527 6.527 5 N -0.383 5.383 6 C 0.035 3.965 7 C -0.164 4.164 8 C 0.305 3.695 9 O -0.483 6.483 10 N -0.351 5.351 11 C -0.009 4.009 12 C -0.122 4.122 13 H 0.078 0.922 14 C -0.126 4.126 15 C -0.155 4.155 16 C -0.155 4.155 17 C 0.072 3.928 18 H 0.057 0.943 19 N -0.383 5.383 20 C -0.340 4.340 21 H 0.068 0.932 22 C -0.262 4.262 23 N -0.641 5.641 24 Si 0.778 3.222 25 H -0.207 1.207 26 H -0.231 1.231 27 H -0.169 1.169 28 C -0.129 4.129 29 H 0.115 0.885 30 C -0.006 4.006 31 H 0.136 0.864 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.255 0.745 35 H 0.257 0.743 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.159 0.841 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.058 0.942 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.201 0.799 49 H 0.062 0.938 50 H 0.070 0.930 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.636 -25.753 14.068 30.085 hybrid contribution 0.623 0.137 -1.465 1.597 sum -6.013 -25.616 12.604 29.175 Atomic orbital electron populations 1.21544 0.77443 1.04210 1.01020 1.44777 1.08215 1.06629 1.79428 1.16298 0.82317 0.84577 0.77787 1.90936 1.69112 1.32843 1.59837 1.44727 1.04002 1.09901 1.79708 1.20574 0.89905 0.84727 1.01311 1.21673 0.92206 0.94313 1.08191 1.20884 0.81096 0.91955 0.75559 1.90737 1.68332 1.36306 1.52881 1.49330 1.04745 1.09295 1.71715 1.22015 0.88729 0.86270 1.03906 1.21840 0.94552 0.95245 1.00597 0.92207 1.21261 0.92041 0.98344 1.00920 1.21524 0.98522 0.94733 1.00677 1.21763 0.96930 0.95909 1.00910 1.20135 0.93244 0.96728 0.82733 0.94266 1.42737 1.66149 1.25888 1.03488 1.18923 1.25378 1.00005 0.89740 0.93208 1.25484 1.02874 1.00475 0.97342 1.69909 1.52987 1.34601 1.06651 0.85482 0.79268 0.79299 0.78191 1.20679 1.23110 1.16916 1.22558 0.93489 0.97308 0.99573 0.88473 1.21918 0.90454 0.87533 1.00705 0.86410 0.93682 0.93929 0.74520 0.74332 0.94155 0.93189 0.84072 0.85399 0.87377 0.89707 0.89403 0.89564 0.89574 0.94167 0.89364 0.92705 0.79872 0.93774 0.92961 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.18 10.70 127.77 1.37 2.55 16 2 N -0.73 -9.40 5.72 -500.19 -2.86 -12.26 16 3 C 0.69 15.79 8.57 179.06 1.53 17.33 16 4 O -0.65 -22.86 16.34 -3.99 -0.07 -22.92 16 5 N -0.73 -12.10 5.56 -478.54 -2.66 -14.76 16 6 C 0.16 3.86 4.96 86.38 0.43 4.29 16 7 C -0.12 -2.18 5.02 29.85 0.15 -2.03 16 8 C 0.52 16.08 7.86 87.66 0.69 16.76 16 9 O -0.60 -26.04 16.27 -3.04 -0.05 -26.09 16 10 N -0.62 -18.34 3.38 -812.37 -2.75 -21.09 16 11 C 0.11 2.13 6.23 85.82 0.53 2.67 16 12 C -0.10 -2.40 2.20 -10.62 -0.02 -2.42 16 13 H 0.06 1.83 6.59 -2.39 -0.02 1.82 16 14 C -0.09 -1.36 5.72 30.37 0.17 -1.19 16 15 C -0.12 -2.27 5.58 30.72 0.17 -2.10 16 16 C -0.12 -2.80 5.53 30.71 0.17 -2.63 16 17 C 0.18 6.03 3.01 44.71 0.13 6.16 16 18 H 0.04 1.48 8.05 -2.39 -0.02 1.46 16 19 N -0.74 -31.44 3.64 -324.27 -1.18 -32.62 16 20 C -0.21 -11.54 8.56 84.03 0.72 -10.83 16 21 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 22 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 23 N -0.99 -64.89 13.97 21.65 0.30 -64.59 16 24 Si 0.95 44.86 27.73 68.60 1.90 46.76 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 27 H -0.24 -10.10 6.52 99.48 0.65 -9.45 16 28 C -0.11 -3.12 2.35 -10.34 -0.02 -3.14 16 29 H 0.10 2.32 8.04 -2.39 -0.02 2.30 16 30 C 0.12 4.40 6.43 86.07 0.55 4.96 16 31 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.42 1.72 8.84 -92.70 -0.82 0.90 16 35 H 0.42 2.78 8.49 -92.71 -0.79 2.00 16 36 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 37 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 38 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.13 1.56 8.14 -2.39 -0.02 1.55 16 40 H 0.11 1.20 8.08 -2.38 -0.02 1.18 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.01 8.06 -2.39 -0.02 0.99 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 45 H 0.04 0.95 7.03 -2.39 -0.02 0.93 16 46 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 47 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.37 14.93 3.83 -92.71 -0.36 14.57 16 49 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 50 H 0.05 2.54 6.15 -2.39 -0.01 2.52 16 51 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 Total: -1.00 -92.98 396.79 -1.38 -94.36 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -1.07 Total: 26.52 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 7.04 Total: 26.68 kcal Atomic # 7 Polarization: -136.17 SS G_CDS: -9.14 Total: -145.31 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.11 Total: -49.01 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Total: -92.98 -1.38 -94.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676838934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.223 kcal (2) G-P(sol) polarization free energy of solvation -92.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds