Wall clock time and date at job start Tue Mar 31 2020 21:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 113.30736 * 2 1 4 4 C 1.55787 * 114.08179 * 227.21232 * 2 1 3 5 5 H 1.08997 * 114.12447 * 95.46665 * 4 2 1 6 6 N 1.46494 * 114.12730 * 323.08578 * 4 2 1 7 7 C 1.34776 * 120.00172 * 156.42001 * 6 4 2 8 8 O 1.21275 * 119.99766 * 4.53631 * 7 6 4 9 9 C 1.50696 * 119.99942 * 184.54142 * 7 6 4 10 10 C 1.53004 * 115.55036 * 278.44973 * 9 7 6 11 11 C 1.53006 * 109.46890 * 294.73887 * 10 9 7 12 12 F 1.39897 * 109.46662 * 184.54532 * 11 10 9 13 13 C 1.53003 * 117.49861 * 132.74749 * 9 7 6 14 14 C 1.53000 * 117.50204 * 64.12029 * 9 7 6 15 15 C 1.50008 * 83.85953 * 209.18329 * 4 2 1 16 16 H 1.08999 * 112.50180 * 283.89178 * 15 4 2 17 17 C 1.51198 * 126.17484 * 141.49788 * 15 4 2 18 18 C 1.54094 * 106.19489 * 198.56598 * 17 15 4 19 19 C 1.52496 * 112.66807 * 55.43505 * 18 17 15 20 20 N 1.47785 * 111.33873 * 312.91265 * 19 18 17 21 21 C 1.36927 * 122.77842 * 231.52764 * 20 19 18 22 22 H 1.08008 * 120.00030 * 143.48345 * 21 20 19 23 23 C 1.38810 * 120.00233 * 323.48001 * 21 20 19 24 24 N 1.31625 * 120.00318 * 168.58880 * 23 21 20 25 25 Si 1.86797 * 119.99991 * 348.58771 * 23 21 20 26 26 H 1.48498 * 109.47235 * 84.50212 * 25 23 21 27 27 H 1.48495 * 109.47321 * 204.50418 * 25 23 21 28 28 H 1.48498 * 109.47062 * 324.50257 * 25 23 21 29 29 C 1.45387 * 114.04062 * 52.87921 * 20 19 18 30 30 H 1.08999 * 112.09867 * 58.41175 * 29 20 19 31 31 H 1.09003 * 109.46861 * 283.20923 * 1 2 3 32 32 H 1.08997 * 109.47417 * 43.21413 * 1 2 3 33 33 H 1.09001 * 109.47067 * 163.21240 * 1 2 3 34 34 H 1.09000 * 109.46834 * 177.17852 * 3 2 1 35 35 H 1.08997 * 109.47645 * 297.17862 * 3 2 1 36 36 H 1.09002 * 109.47301 * 57.18064 * 3 2 1 37 37 H 0.97006 * 119.99704 * 336.42012 * 6 4 2 38 38 H 1.09002 * 109.46837 * 54.73493 * 10 9 7 39 39 H 1.08993 * 109.47298 * 174.73699 * 10 9 7 40 40 H 1.09000 * 109.46707 * 304.54166 * 11 10 9 41 41 H 1.08993 * 109.47628 * 64.54410 * 11 10 9 42 42 H 1.08997 * 117.49942 * 359.97438 * 13 9 7 43 43 H 1.09001 * 117.49881 * 145.01903 * 13 9 7 44 44 H 1.08997 * 117.50008 * 214.97713 * 14 9 7 45 45 H 1.09003 * 117.49868 * 0.02562 * 14 9 7 46 46 H 1.09003 * 110.10021 * 317.72981 * 17 15 4 47 47 H 1.08998 * 110.10136 * 79.39550 * 17 15 4 48 48 H 1.08992 * 108.84350 * 176.26107 * 18 17 15 49 49 H 1.08999 * 108.84078 * 294.72089 * 18 17 15 50 50 H 1.09002 * 109.00272 * 73.83188 * 19 18 17 51 51 H 1.09003 * 109.00443 * 192.67825 * 19 18 17 52 52 H 0.96999 * 119.99718 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1354 1.4051 0.0000 4 6 2.1657 -0.9661 -1.0438 5 1 2.4340 -0.4894 -1.9865 6 7 1.4342 -2.2231 -1.2196 7 6 1.5591 -2.9209 -2.3659 8 8 2.3392 -2.5523 -3.2182 9 6 0.7295 -4.1591 -2.5885 10 6 1.2611 -5.4360 -1.9345 11 6 2.5960 -5.8199 -2.5763 12 9 3.0311 -7.0417 -2.0518 13 6 0.0158 -4.2986 -3.9347 14 6 -0.7886 -3.9869 -2.6710 15 6 3.2891 -1.0394 -0.0523 16 1 3.9179 -0.1493 -0.0679 17 6 4.0881 -2.2733 0.3015 18 6 4.7664 -1.9734 1.6522 19 6 3.7696 -1.5702 2.7336 20 7 2.8177 -0.5551 2.2361 21 6 2.5753 0.6201 2.8956 22 1 2.3998 1.5271 2.3360 23 6 2.5551 0.6459 4.2833 24 7 2.5477 1.7978 4.9202 25 14 2.5385 -0.9542 5.2471 26 1 3.9291 -1.4496 5.4079 27 1 1.9387 -0.7199 6.5851 28 1 1.7345 -1.9650 4.5143 29 6 2.1420 -0.9301 1.0046 30 1 1.5851 -1.8612 1.1096 31 1 -0.3633 0.2348 1.0005 32 1 -0.3634 0.7489 -0.7036 33 1 -0.3633 -0.9839 -0.2968 34 1 3.2218 1.3326 0.0506 35 1 1.8481 1.9246 -0.9141 36 1 1.7676 1.9592 0.8636 37 1 0.8598 -2.5531 -0.5110 38 1 1.4067 -5.2645 -0.8680 39 1 0.5434 -6.2437 -2.0780 40 1 2.4673 -5.9126 -3.6547 41 1 3.3365 -5.0490 -2.3636 42 1 0.1461 -3.4947 -4.6591 43 1 -0.0750 -5.3004 -4.3547 44 1 -1.4085 -4.7836 -2.2597 45 1 -1.1872 -2.9780 -2.5646 46 1 3.4257 -3.1336 0.3978 47 1 4.8421 -2.4631 -0.4624 48 1 5.3028 -2.8630 1.9819 49 1 5.4815 -1.1624 1.5146 50 1 3.2218 -2.4546 3.0590 51 1 4.3147 -1.1584 3.5830 52 1 2.5339 1.8157 5.8899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689145838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:45 Heat of formation + Delta-G solvation = -13.062984 kcal Electronic energy + Delta-G solvation = -32178.286901 eV Core-core repulsion = 28094.442457 eV Total energy + Delta-G solvation = -4083.844444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.60751 -42.71321 -40.73500 -37.88617 -37.11992 -34.88115 -34.32684 -32.68149 -32.17612 -30.88047 -28.52464 -27.61913 -26.86362 -25.22147 -23.96043 -23.90595 -23.19570 -22.39484 -21.06886 -20.42855 -19.57334 -18.66252 -18.02831 -17.19176 -17.14776 -16.98136 -16.71232 -16.21409 -15.87393 -15.73912 -15.61492 -15.48783 -15.30208 -15.03071 -14.68720 -14.55895 -14.27437 -14.10671 -13.93383 -13.69753 -13.39785 -13.30288 -13.13888 -12.89806 -12.81050 -12.69285 -12.58400 -12.38141 -12.26538 -11.98654 -11.96773 -11.79846 -11.64415 -11.52889 -11.49216 -11.33356 -11.23583 -11.01352 -10.71602 -10.66473 -10.30299 -9.94658 -8.52354 -8.09132 -5.52622 1.30419 1.38929 1.47234 1.55755 2.03090 2.44939 2.65042 3.08241 3.18618 3.41159 3.44023 3.63588 3.66053 3.78986 3.80738 3.84427 4.01882 4.02541 4.09472 4.16557 4.21040 4.29348 4.37736 4.42918 4.50558 4.53137 4.60959 4.67951 4.77978 4.83095 4.85544 4.86772 4.93476 4.95439 5.00317 5.02713 5.04669 5.09413 5.13627 5.14907 5.17380 5.22849 5.24135 5.34031 5.42303 5.48942 5.52467 5.75078 5.99167 6.36825 6.54243 6.97468 7.22493 7.66791 8.23286 9.09370 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.003954 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.405483 B = 7079.311760 C = 7881.174166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.115 4.115 4 C 0.159 3.841 5 H 0.093 0.907 6 N -0.690 5.690 7 C 0.553 3.447 8 O -0.572 6.572 9 C -0.170 4.170 10 C -0.099 4.099 11 C 0.060 3.940 12 F -0.231 7.231 13 C -0.142 4.142 14 C -0.140 4.140 15 C -0.161 4.161 16 H 0.087 0.913 17 C -0.077 4.077 18 C -0.124 4.124 19 C 0.122 3.878 20 N -0.600 5.600 21 C -0.234 4.234 22 H 0.077 0.923 23 C -0.031 4.031 24 N -0.962 5.962 25 Si 0.941 3.059 26 H -0.279 1.279 27 H -0.317 1.317 28 H -0.264 1.264 29 C 0.135 3.865 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.410 0.590 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.050 0.950 50 H 0.024 0.976 51 H 0.045 0.955 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -15.001 -17.239 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.064 4.064 3 C -0.172 4.172 4 C 0.053 3.947 5 H 0.111 0.889 6 N -0.341 5.341 7 C 0.340 3.660 8 O -0.451 6.451 9 C -0.173 4.173 10 C -0.137 4.137 11 C 0.005 3.995 12 F -0.213 7.213 13 C -0.179 4.179 14 C -0.177 4.177 15 C -0.182 4.182 16 H 0.105 0.895 17 C -0.115 4.115 18 C -0.163 4.163 19 C -0.002 4.002 20 N -0.323 5.323 21 C -0.363 4.363 22 H 0.094 0.906 23 C -0.225 4.225 24 N -0.608 5.608 25 Si 0.772 3.228 26 H -0.205 1.205 27 H -0.246 1.246 28 H -0.188 1.188 29 C 0.029 3.971 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.248 0.752 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.120 0.880 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.069 0.931 50 H 0.042 0.958 51 H 0.063 0.937 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.071 -14.659 -17.651 23.734 hybrid contribution 0.256 -0.195 1.798 1.826 sum -5.816 -14.854 -15.854 22.490 Atomic orbital electron populations 1.21648 0.92984 1.02593 1.01557 1.21851 0.96043 0.94803 0.93660 1.21615 1.00234 0.94101 1.01260 1.21172 0.91669 0.84872 0.97006 0.88873 1.45642 1.47821 1.22477 1.18132 1.19951 0.81635 0.83688 0.80741 1.90689 1.38697 1.70306 1.45359 1.21207 0.96253 0.93596 1.06287 1.21573 0.96708 0.95068 1.00315 1.22037 0.96637 0.81256 0.99594 1.92739 1.91462 1.47902 1.89162 1.23120 1.00304 1.04676 0.89806 1.23279 0.89263 1.04825 1.00314 1.23275 0.96955 0.99506 0.98482 0.89544 1.20948 0.98502 0.96679 0.95358 1.21831 0.97909 1.00863 0.95653 1.21307 0.91383 0.91305 0.96227 1.44177 1.42859 1.17945 1.27353 1.19122 1.41280 0.87134 0.88781 0.90611 1.26160 0.99873 0.98340 0.98167 1.69890 1.56886 1.26109 1.07948 0.85998 0.77790 0.82051 0.77000 1.20541 1.24572 1.18824 1.22068 0.94099 0.95930 0.84999 0.92289 0.93685 0.91555 0.90952 0.93062 0.91403 0.93083 0.75216 0.90129 0.87309 0.89208 0.92210 0.89110 0.85718 0.85336 0.87971 0.92049 0.92408 0.90647 0.93101 0.95826 0.93708 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.27 71.98 0.67 -2.73 16 2 C -0.06 -1.88 1.39 -55.19 -0.08 -1.96 16 3 C -0.11 -3.83 7.88 71.98 0.57 -3.26 16 4 C 0.16 4.33 3.93 42.47 0.17 4.50 16 5 H 0.09 2.71 7.54 -2.39 -0.02 2.69 16 6 N -0.69 -15.21 4.17 -454.70 -1.90 -17.11 16 7 C 0.55 12.41 6.46 87.66 0.57 12.98 16 8 O -0.57 -17.30 16.66 -3.01 -0.05 -17.35 16 9 C -0.17 -2.53 1.87 -52.93 -0.10 -2.63 16 10 C -0.10 -1.35 5.54 30.60 0.17 -1.18 16 11 C 0.06 1.05 7.36 71.98 0.53 1.58 16 12 F -0.23 -5.03 17.36 44.97 0.78 -4.25 16 13 C -0.14 -1.70 9.89 30.60 0.30 -1.39 16 14 C -0.14 -1.40 9.92 30.60 0.30 -1.10 16 15 C -0.16 -5.06 2.96 -14.17 -0.04 -5.10 16 16 H 0.09 3.08 5.88 -2.39 -0.01 3.06 16 17 C -0.08 -2.29 5.94 30.38 0.18 -2.11 16 18 C -0.12 -4.08 5.89 30.80 0.18 -3.90 16 19 C 0.12 4.99 4.19 85.97 0.36 5.35 16 20 N -0.60 -26.35 2.52 -691.49 -1.74 -28.09 16 21 C -0.23 -12.43 9.72 84.03 0.82 -11.62 16 22 H 0.08 4.30 5.04 -2.91 -0.01 4.29 16 23 C -0.03 -1.76 5.38 84.86 0.46 -1.30 16 24 N -0.96 -59.40 13.97 21.65 0.30 -59.10 16 25 Si 0.94 46.12 24.40 68.60 1.67 47.79 16 26 H -0.28 -13.11 6.49 99.48 0.65 -12.47 16 27 H -0.32 -16.00 7.11 99.48 0.71 -15.29 16 28 H -0.26 -12.27 6.75 99.48 0.67 -11.60 16 29 C 0.14 4.71 2.97 42.87 0.13 4.84 16 30 H 0.06 1.94 6.54 -2.39 -0.02 1.93 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 33 H 0.07 1.50 6.38 -2.39 -0.02 1.48 16 34 H 0.05 1.83 5.91 -2.39 -0.01 1.82 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 2.02 6.03 -2.39 -0.01 2.00 16 37 H 0.41 7.86 6.38 -92.70 -0.59 7.26 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 1.03 8.09 -2.39 -0.02 1.01 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.26 7.85 -2.39 -0.02 1.24 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 1.70 7.98 -2.39 -0.02 1.68 16 47 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.02 0.95 6.91 -2.39 -0.02 0.93 16 51 H 0.04 2.04 5.21 -2.39 -0.01 2.03 16 52 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -68.20 391.73 4.48 -63.72 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.24 Total: 23.42 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.18 Total: -9.03 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -3.34 Total: -104.30 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.05 Total: -17.35 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.78 Total: -4.25 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.67 Total: 47.79 kcal Total: -68.20 4.48 -63.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689145838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.658 kcal (2) G-P(sol) polarization free energy of solvation -68.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds