Wall clock time and date at job start Tue Mar 31 2020 21:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46960 * 2 1 4 4 C 1.36939 * 120.00230 * 275.31553 * 3 2 1 5 5 H 1.07994 * 120.00468 * 37.57400 * 4 3 2 6 6 C 1.38816 * 119.99567 * 217.58029 * 4 3 2 7 7 N 1.31621 * 120.00315 * 21.42215 * 6 4 3 8 8 Si 1.86800 * 119.99607 * 201.41641 * 6 4 3 9 9 H 1.48495 * 109.47050 * 60.00566 * 8 6 4 10 10 H 1.48503 * 109.46978 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47411 * 300.00185 * 8 6 4 12 12 C 1.46501 * 119.99831 * 95.31036 * 3 2 1 13 13 C 1.53004 * 109.47445 * 269.99791 * 12 3 2 14 14 C 1.52989 * 109.47361 * 179.97438 * 13 12 3 15 15 N 1.46502 * 109.47323 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00192 * 180.02562 * 15 14 13 17 17 O 1.21278 * 119.99870 * 0.02562 * 16 15 14 18 18 C 1.50707 * 120.00004 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.46868 * 179.97438 * 18 16 15 20 20 N 1.33315 * 126.54666 * 89.98162 * 19 18 16 21 21 N 1.29001 * 107.35284 * 179.97438 * 20 19 18 22 22 N 1.28781 * 108.72667 * 359.97438 * 21 20 19 23 23 C 1.46500 * 125.45093 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.47126 * 0.02649 * 23 22 21 25 25 C 1.52999 * 109.47196 * 240.02128 * 23 22 21 26 26 C 1.53000 * 109.47109 * 120.02268 * 23 22 21 27 27 N 1.28885 * 109.10087 * 0.22863 * 22 21 20 28 28 H 1.09002 * 109.46959 * 299.99423 * 1 2 3 29 29 H 1.08994 * 109.47034 * 59.99941 * 1 2 3 30 30 H 1.09002 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 240.00577 * 2 1 3 32 32 H 1.08994 * 109.47034 * 120.00059 * 2 1 3 33 33 H 0.97001 * 119.99921 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47382 * 150.00189 * 12 3 2 35 35 H 1.08996 * 109.47404 * 30.00084 * 12 3 2 36 36 H 1.09003 * 109.46505 * 59.99861 * 13 12 3 37 37 H 1.08996 * 109.47059 * 300.00505 * 13 12 3 38 38 H 1.09003 * 109.47352 * 60.00469 * 14 13 12 39 39 H 1.08996 * 109.47519 * 300.00312 * 14 13 12 40 40 H 0.97001 * 119.99748 * 359.97438 * 15 14 13 41 41 H 1.09000 * 109.47300 * 59.99774 * 18 16 15 42 42 H 1.08998 * 109.46631 * 299.99869 * 18 16 15 43 43 H 1.09008 * 109.47048 * 299.99861 * 24 23 22 44 44 H 1.08996 * 109.47554 * 179.97438 * 24 23 22 45 45 H 1.09005 * 109.47125 * 59.99588 * 24 23 22 46 46 H 1.08996 * 109.46860 * 179.97438 * 25 23 22 47 47 H 1.08995 * 109.47359 * 300.00348 * 25 23 22 48 48 H 1.09008 * 109.46810 * 60.00241 * 25 23 22 49 49 H 1.09005 * 109.47102 * 300.00388 * 26 23 22 50 50 H 1.09000 * 109.47277 * 60.00090 * 26 23 22 51 51 H 1.08997 * 109.47388 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4105 1.9280 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3027 2.7982 -0.6490 8 14 3.0993 4.2796 -2.6585 9 1 1.9627 5.1786 -2.3343 10 1 4.3622 5.0608 -2.6669 11 1 2.8844 3.6726 -3.9966 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7383 1.8367 14 6 1.5130 3.4180 3.1562 15 7 0.3345 4.0931 3.7055 16 6 0.4243 4.7640 4.8710 17 8 1.4808 4.8092 5.4648 18 6 -0.7879 5.4589 5.4357 19 6 -0.4230 6.1284 6.7356 20 7 0.0323 7.3721 6.8876 21 7 0.2226 7.5606 8.1494 22 7 -0.0971 6.4848 8.7811 23 6 -0.0211 6.2970 10.2320 24 6 0.4974 7.5793 10.8858 25 6 0.9316 5.1422 10.5476 26 6 -1.4133 5.9732 10.7778 27 7 -0.4894 5.5981 7.9320 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 5.0488 3.4033 -0.7830 34 1 3.1617 2.7642 1.0860 35 1 2.7255 1.2834 1.9721 36 1 0.3541 2.0068 2.0139 37 1 0.7903 3.4876 1.1278 38 1 2.3016 4.1495 2.9794 39 1 1.8651 2.6684 3.8649 40 1 -0.5102 4.0579 3.2300 41 1 -1.5764 4.7275 5.6129 42 1 -1.1401 6.2083 4.7269 43 1 1.4893 7.8100 10.4969 44 1 0.5535 7.4397 11.9653 45 1 -0.1814 8.4020 10.6609 46 1 0.9884 5.0027 11.6271 47 1 0.5621 4.2286 10.0817 48 1 1.9235 5.3728 10.1587 49 1 -2.0921 6.7959 10.5529 50 1 -1.7828 5.0597 10.3120 51 1 -1.3568 5.8330 11.8573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689934835.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:06 Heat of formation + Delta-G solvation = 95.019977 kcal Electronic energy + Delta-G solvation = -29155.285190 eV Core-core repulsion = 25128.340288 eV Total energy + Delta-G solvation = -4026.944903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.44464 -39.56216 -37.96944 -36.43947 -34.78494 -33.68048 -33.32057 -31.84845 -31.40364 -29.65168 -28.40813 -28.07044 -27.89895 -25.25989 -24.72077 -23.68719 -22.54816 -21.03310 -20.88834 -20.48384 -19.89739 -17.60573 -17.36030 -16.72502 -16.63668 -15.93213 -15.57358 -15.01434 -14.77831 -14.65322 -14.44194 -14.22791 -13.86120 -13.74989 -13.56764 -13.35134 -13.31458 -13.00144 -12.85362 -12.63489 -12.38026 -12.36757 -12.34810 -12.04863 -11.98198 -11.57863 -11.54685 -11.39791 -11.13541 -11.00321 -10.98914 -10.93529 -10.72054 -10.57645 -10.46778 -10.37185 -10.03678 -9.76951 -9.59885 -9.51955 -8.84772 -8.45144 -6.54777 -5.76793 -3.36152 1.16250 1.66518 2.04693 2.69397 3.28857 3.38091 3.44875 3.45727 3.64340 3.91829 4.02163 4.12578 4.38261 4.49098 4.78247 4.87541 4.89993 4.96799 5.01704 5.05731 5.12419 5.13982 5.27051 5.28023 5.41466 5.41903 5.51251 5.57401 5.63757 5.67997 5.79679 5.86023 5.99748 6.10190 6.11591 6.29569 6.36766 6.44417 6.48445 6.59604 6.76324 6.79235 6.92376 7.10905 7.19049 7.61996 7.69752 7.83851 8.30452 8.31165 8.54249 9.21514 9.83883 10.42778 11.22667 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.001970 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.936136 B =14212.736222 C =14883.574752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.122 3.878 15 N -0.722 5.722 16 C 0.516 3.484 17 O -0.536 6.536 18 C -0.045 4.045 19 C 0.187 3.813 20 N -0.276 5.276 21 N -0.063 5.063 22 N -0.131 5.131 23 C 0.179 3.821 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.157 4.157 27 N -0.296 5.296 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.024 0.976 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.401 0.599 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.431 5.231 23.627 27.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.023 3.977 13 C -0.187 4.187 14 C -0.002 4.002 15 N -0.373 5.373 16 C 0.299 3.701 17 O -0.412 6.412 18 C -0.088 4.088 19 C -0.096 4.096 20 N -0.147 5.147 21 N -0.056 5.056 22 N -0.045 5.045 23 C 0.098 3.902 24 C -0.211 4.211 25 C -0.218 4.218 26 C -0.216 4.216 27 N -0.146 5.146 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.235 0.765 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.235 5.802 24.473 27.970 hybrid contribution -0.623 0.358 -1.258 1.449 sum -12.858 6.160 23.215 27.244 Atomic orbital electron populations 1.22370 1.00181 0.98861 1.01105 1.20847 0.91671 0.87425 0.98700 1.43731 1.76069 1.08150 1.02479 1.18929 1.04653 1.21330 0.94185 0.92377 1.25196 0.94212 1.01299 0.98071 1.69989 1.03176 1.37282 1.42373 0.86488 0.76958 0.82394 0.81637 1.20879 1.21616 1.20750 1.20795 0.94466 0.96640 0.85755 1.22537 1.02375 0.99897 0.93854 1.21495 0.86983 0.96102 0.95603 1.46081 1.14775 1.53612 1.22848 1.20107 0.89459 0.79149 0.81349 1.90737 1.30142 1.60670 1.59680 1.19888 0.98298 1.00683 0.89981 1.24598 1.01126 0.90067 0.93791 1.75812 1.16017 1.16148 1.06683 1.78890 1.16025 1.11015 0.99641 1.50407 1.38354 1.05729 1.09962 1.21366 0.99177 0.99369 0.70292 1.22087 1.03225 0.94661 1.01106 1.22237 0.98975 0.97085 1.03481 1.22222 0.93296 1.03593 1.02457 1.74522 1.20698 1.19636 0.99720 0.93790 0.93270 0.94668 0.93910 0.94867 0.93439 0.88764 0.95715 0.93017 0.91612 0.91453 0.92018 0.76548 0.86035 0.85616 0.90531 0.89304 0.90646 0.89261 0.90369 0.91238 0.91463 0.90430 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.89 16 3 N -0.58 -14.13 2.43 -173.23 -0.42 -14.55 16 4 C -0.26 -6.98 9.45 -15.06 -0.14 -7.12 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.14 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -25.38 11.47 55.49 0.64 -24.74 16 8 Si 0.90 21.43 29.60 -169.99 -5.03 16.40 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.15 3.40 5.33 -4.04 -0.02 3.38 16 13 C -0.15 -2.66 5.65 -26.73 -0.15 -2.81 16 14 C 0.12 2.03 5.67 -4.05 -0.02 2.01 16 15 N -0.72 -9.75 5.56 -60.30 -0.33 -10.09 16 16 C 0.52 7.55 7.82 -10.98 -0.09 7.46 16 17 O -0.54 -10.42 16.03 5.56 0.09 -10.33 16 18 C -0.05 -0.49 6.33 -29.03 -0.18 -0.67 16 19 C 0.19 2.59 6.86 -156.63 -1.07 1.52 16 20 N -0.28 -4.25 12.50 32.44 0.41 -3.85 16 21 N -0.06 -0.88 12.24 60.35 0.74 -0.14 16 22 N -0.13 -1.54 3.73 0.48 0.00 -1.54 16 23 C 0.18 1.32 1.30 -131.82 -0.17 1.15 16 24 C -0.15 -0.85 7.91 37.16 0.29 -0.56 16 25 C -0.16 -1.07 8.66 37.16 0.32 -0.74 16 26 C -0.16 -0.81 8.67 37.16 0.32 -0.49 16 27 N -0.30 -3.89 11.83 32.46 0.38 -3.51 16 28 H 0.04 0.74 6.64 -51.93 -0.34 0.40 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.09 2.45 5.52 -51.93 -0.29 2.16 16 35 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 36 H 0.05 0.87 6.64 -51.93 -0.34 0.53 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 41 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 44 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 419.52 15.07 6.32 6.32 Total: -1.00 -35.08 419.52 -6.73 -41.81 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.87 Total: 0.49 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.65 Total: 3.73 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 1.41 Total: -58.42 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.08 -6.73 -41.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689934835.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.834 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds