Wall clock time and date at job start Tue Mar 31 2020 21:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46960 * 2 1 4 4 C 1.36939 * 120.00230 * 275.31553 * 3 2 1 5 5 H 1.07994 * 120.00468 * 37.57400 * 4 3 2 6 6 C 1.38816 * 119.99567 * 217.58029 * 4 3 2 7 7 N 1.31621 * 120.00315 * 21.42215 * 6 4 3 8 8 Si 1.86800 * 119.99607 * 201.41641 * 6 4 3 9 9 H 1.48495 * 109.47050 * 60.00566 * 8 6 4 10 10 H 1.48503 * 109.46978 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47411 * 300.00185 * 8 6 4 12 12 C 1.46501 * 119.99831 * 95.31036 * 3 2 1 13 13 C 1.53004 * 109.47445 * 269.99791 * 12 3 2 14 14 C 1.52989 * 109.47361 * 179.97438 * 13 12 3 15 15 N 1.46502 * 109.47323 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00192 * 180.02562 * 15 14 13 17 17 O 1.21278 * 119.99870 * 0.02562 * 16 15 14 18 18 C 1.50707 * 120.00004 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.46868 * 179.97438 * 18 16 15 20 20 N 1.33315 * 126.54666 * 89.98162 * 19 18 16 21 21 N 1.29001 * 107.35284 * 179.97438 * 20 19 18 22 22 N 1.28781 * 108.72667 * 359.97438 * 21 20 19 23 23 C 1.46500 * 125.45093 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.47126 * 0.02649 * 23 22 21 25 25 C 1.52999 * 109.47196 * 240.02128 * 23 22 21 26 26 C 1.53000 * 109.47109 * 120.02268 * 23 22 21 27 27 N 1.28885 * 109.10087 * 0.22863 * 22 21 20 28 28 H 1.09002 * 109.46959 * 299.99423 * 1 2 3 29 29 H 1.08994 * 109.47034 * 59.99941 * 1 2 3 30 30 H 1.09002 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 240.00577 * 2 1 3 32 32 H 1.08994 * 109.47034 * 120.00059 * 2 1 3 33 33 H 0.97001 * 119.99921 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47382 * 150.00189 * 12 3 2 35 35 H 1.08996 * 109.47404 * 30.00084 * 12 3 2 36 36 H 1.09003 * 109.46505 * 59.99861 * 13 12 3 37 37 H 1.08996 * 109.47059 * 300.00505 * 13 12 3 38 38 H 1.09003 * 109.47352 * 60.00469 * 14 13 12 39 39 H 1.08996 * 109.47519 * 300.00312 * 14 13 12 40 40 H 0.97001 * 119.99748 * 359.97438 * 15 14 13 41 41 H 1.09000 * 109.47300 * 59.99774 * 18 16 15 42 42 H 1.08998 * 109.46631 * 299.99869 * 18 16 15 43 43 H 1.09008 * 109.47048 * 299.99861 * 24 23 22 44 44 H 1.08996 * 109.47554 * 179.97438 * 24 23 22 45 45 H 1.09005 * 109.47125 * 59.99588 * 24 23 22 46 46 H 1.08996 * 109.46860 * 179.97438 * 25 23 22 47 47 H 1.08995 * 109.47359 * 300.00348 * 25 23 22 48 48 H 1.09008 * 109.46810 * 60.00241 * 25 23 22 49 49 H 1.09005 * 109.47102 * 300.00388 * 26 23 22 50 50 H 1.09000 * 109.47277 * 60.00090 * 26 23 22 51 51 H 1.08997 * 109.47388 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4105 1.9280 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3027 2.7982 -0.6490 8 14 3.0993 4.2796 -2.6585 9 1 1.9627 5.1786 -2.3343 10 1 4.3622 5.0608 -2.6669 11 1 2.8844 3.6726 -3.9966 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7383 1.8367 14 6 1.5130 3.4180 3.1562 15 7 0.3345 4.0931 3.7055 16 6 0.4243 4.7640 4.8710 17 8 1.4808 4.8092 5.4648 18 6 -0.7879 5.4589 5.4357 19 6 -0.4230 6.1284 6.7356 20 7 0.0323 7.3721 6.8876 21 7 0.2226 7.5606 8.1494 22 7 -0.0971 6.4848 8.7811 23 6 -0.0211 6.2970 10.2320 24 6 0.4974 7.5793 10.8858 25 6 0.9316 5.1422 10.5476 26 6 -1.4133 5.9732 10.7778 27 7 -0.4894 5.5981 7.9320 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 5.0488 3.4033 -0.7830 34 1 3.1617 2.7642 1.0860 35 1 2.7255 1.2834 1.9721 36 1 0.3541 2.0068 2.0139 37 1 0.7903 3.4876 1.1278 38 1 2.3016 4.1495 2.9794 39 1 1.8651 2.6684 3.8649 40 1 -0.5102 4.0579 3.2300 41 1 -1.5764 4.7275 5.6129 42 1 -1.1401 6.2083 4.7269 43 1 1.4893 7.8100 10.4969 44 1 0.5535 7.4397 11.9653 45 1 -0.1814 8.4020 10.6609 46 1 0.9884 5.0027 11.6271 47 1 0.5621 4.2286 10.0817 48 1 1.9235 5.3728 10.1587 49 1 -2.0921 6.7959 10.5529 50 1 -1.7828 5.0597 10.3120 51 1 -1.3568 5.8330 11.8573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689934835.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:05 Heat of formation + Delta-G solvation = 70.809882 kcal Electronic energy + Delta-G solvation = -29156.335019 eV Core-core repulsion = 25128.340288 eV Total energy + Delta-G solvation = -4027.994731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.39999 -40.77964 -38.62174 -38.16703 -36.20914 -34.67586 -34.21121 -33.79809 -32.81966 -30.79372 -29.93716 -28.53119 -28.43805 -26.98530 -25.65322 -25.28270 -23.64682 -22.52126 -22.06524 -21.67713 -21.28696 -18.64544 -18.58682 -18.04895 -17.68917 -17.16328 -16.98539 -16.68194 -15.91675 -15.71315 -15.39984 -15.24100 -15.19984 -15.05176 -14.70221 -14.60089 -14.26373 -14.04495 -14.03101 -13.45077 -13.34891 -13.24034 -13.20163 -13.09837 -12.89608 -12.86342 -12.71410 -12.67405 -12.57373 -12.53230 -12.34092 -12.16916 -12.12732 -11.95652 -11.92147 -11.87909 -11.46159 -11.38501 -11.22175 -10.86392 -10.47396 -10.13018 -8.52973 -7.79372 -5.43528 0.20292 0.91653 1.03420 1.46695 1.49673 1.55612 1.55616 2.19446 2.52414 2.80492 3.15179 3.25876 3.51298 3.58479 3.66067 3.68641 3.78443 4.17701 4.19169 4.35367 4.39706 4.45118 4.47585 4.51378 4.52516 4.56809 4.59583 4.67224 4.70761 4.72130 4.75381 4.76455 4.80878 4.91324 5.00894 5.03368 5.07006 5.10449 5.18873 5.20861 5.34683 5.36432 5.42159 5.49529 5.63181 5.71596 5.86533 6.49540 6.52549 7.19784 7.21119 7.32059 7.90823 8.43099 9.14940 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.001970 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.936136 B =14212.736222 C =14883.574752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.262 4.262 5 H 0.057 0.943 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.298 1.298 11 H -0.274 1.274 12 C 0.149 3.851 13 C -0.121 4.121 14 C 0.134 3.866 15 N -0.707 5.707 16 C 0.516 3.484 17 O -0.590 6.590 18 C -0.037 4.037 19 C 0.173 3.827 20 N -0.311 5.311 21 N -0.080 5.080 22 N -0.119 5.119 23 C 0.161 3.839 24 C -0.149 4.149 25 C -0.156 4.156 26 C -0.151 4.151 27 N -0.303 5.303 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.420 0.580 41 H 0.161 0.839 42 H 0.155 0.845 43 H 0.058 0.942 44 H 0.126 0.874 45 H 0.070 0.930 46 H 0.128 0.872 47 H 0.063 0.937 48 H 0.047 0.953 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.251 4.863 25.085 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.392 4.392 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.224 1.224 11 H -0.200 1.200 12 C 0.022 3.978 13 C -0.162 4.162 14 C 0.010 3.990 15 N -0.360 5.360 16 C 0.301 3.699 17 O -0.470 6.470 18 C -0.079 4.079 19 C -0.110 4.110 20 N -0.181 5.181 21 N -0.072 5.072 22 N -0.035 5.035 23 C 0.082 3.918 24 C -0.207 4.207 25 C -0.214 4.214 26 C -0.209 4.209 27 N -0.154 5.154 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.258 0.742 41 H 0.179 0.821 42 H 0.172 0.828 43 H 0.077 0.923 44 H 0.144 0.856 45 H 0.089 0.911 46 H 0.146 0.854 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.122 5.427 25.915 30.491 hybrid contribution 0.281 0.365 -1.602 1.667 sum -14.841 5.791 24.313 29.068 Atomic orbital electron populations 1.22166 0.97071 1.00788 1.00962 1.21006 0.93994 0.85658 0.98542 1.43977 1.76471 1.09555 1.02223 1.19148 1.04014 1.21182 0.94887 0.92582 1.25868 0.94046 1.03420 1.00187 1.70130 1.03794 1.38093 1.44297 0.85560 0.76515 0.79930 0.79792 1.20206 1.22419 1.20003 1.20699 0.95423 0.96057 0.85572 1.22155 1.00628 0.99625 0.93747 1.21112 0.87562 0.95381 0.94980 1.45832 1.14578 1.52856 1.22705 1.20766 0.89927 0.78367 0.80791 1.90722 1.32552 1.62570 1.61172 1.20047 0.96905 1.01812 0.89135 1.25146 1.01035 0.89856 0.94970 1.75757 1.17348 1.17464 1.07521 1.78803 1.16775 1.11982 0.99607 1.50970 1.36442 1.04842 1.11247 1.22014 1.00975 1.00527 0.68278 1.22137 1.01899 0.93595 1.03096 1.22265 0.97389 0.95994 1.05765 1.22241 0.91397 1.02860 1.04398 1.74489 1.21052 1.20006 0.99880 0.92799 0.94451 0.91704 0.95387 0.93783 0.94111 0.92478 0.95552 0.90735 0.92712 0.94223 0.92371 0.74243 0.82134 0.82756 0.92251 0.85608 0.91101 0.85410 0.91770 0.93362 0.91811 0.91361 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 10.21 71.98 0.73 -4.15 16 2 C 0.13 5.40 6.44 86.38 0.56 5.96 16 3 N -0.60 -28.99 2.43 -701.99 -1.71 -30.70 16 4 C -0.26 -14.03 9.45 84.03 0.79 -13.23 16 5 H 0.06 2.99 7.92 -2.91 -0.02 2.96 16 6 C -0.04 -2.10 4.95 84.86 0.42 -1.68 16 7 N -0.92 -54.18 11.47 21.65 0.25 -53.93 16 8 Si 0.95 44.55 29.60 68.60 2.03 46.58 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.15 6.80 5.33 86.38 0.46 7.26 16 13 C -0.12 -4.30 5.65 30.59 0.17 -4.12 16 14 C 0.13 4.47 5.67 86.38 0.49 4.96 16 15 N -0.71 -18.02 5.56 -463.07 -2.57 -20.59 16 16 C 0.52 14.61 7.82 87.66 0.69 15.29 16 17 O -0.59 -23.33 16.03 -3.02 -0.05 -23.38 16 18 C -0.04 -0.71 6.33 29.10 0.18 -0.53 16 19 C 0.17 4.69 6.86 138.55 0.95 5.64 16 20 N -0.31 -9.68 12.50 -51.26 -0.64 -10.32 16 21 N -0.08 -2.26 12.24 37.02 0.45 -1.80 16 22 N -0.12 -2.79 3.73 -152.40 -0.57 -3.36 16 23 C 0.16 2.17 1.30 3.60 0.00 2.17 16 24 C -0.15 -1.45 7.91 71.98 0.57 -0.88 16 25 C -0.16 -1.90 8.66 71.98 0.62 -1.28 16 26 C -0.15 -1.22 8.67 71.98 0.62 -0.60 16 27 N -0.30 -7.84 11.83 -51.20 -0.61 -8.45 16 28 H 0.05 1.63 6.64 -2.39 -0.02 1.62 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 32 H 0.04 1.67 7.83 -2.39 -0.02 1.65 16 33 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.06 3.08 5.52 -2.39 -0.01 3.07 16 35 H 0.03 1.15 7.86 -2.39 -0.02 1.13 16 36 H 0.07 2.31 6.64 -2.39 -0.02 2.30 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.42 7.46 8.47 -92.71 -0.79 6.67 16 41 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -80.09 419.52 3.99 -76.10 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.13 Total: 15.05 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 7.27 Total: 14.80 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.39 Total: -129.15 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.05 Total: -23.38 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -80.09 3.99 -76.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689934835.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.911 kcal (2) G-P(sol) polarization free energy of solvation -80.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds