Wall clock time and date at job start Tue Mar 31 2020 20:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 110.99902 * 2 1 4 4 C 1.46898 * 111.00126 * 123.95037 * 2 1 3 5 5 C 1.50702 * 112.85230 * 297.95213 * 4 2 1 6 6 O 1.21279 * 119.99631 * 0.41450 * 5 4 2 7 7 N 1.34777 * 120.00039 * 180.40641 * 5 4 2 8 8 C 1.46503 * 119.99822 * 175.20447 * 7 5 4 9 9 H 1.09000 * 110.28436 * 34.30573 * 8 7 5 10 10 C 1.54259 * 110.32428 * 272.17713 * 8 7 5 11 11 C 1.54379 * 105.05875 * 241.00096 * 10 8 7 12 12 N 1.48565 * 104.59582 * 23.85554 * 11 10 8 13 13 C 1.46901 * 110.99833 * 200.95961 * 12 11 10 14 14 C 1.50703 * 109.46912 * 290.12172 * 13 12 11 15 15 O 1.21284 * 120.00141 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99601 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99859 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99458 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00136 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00117 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00118 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46960 * 90.00377 * 21 19 17 23 23 H 1.48497 * 109.47384 * 210.00330 * 21 19 17 24 24 H 1.48493 * 109.47162 * 330.00743 * 21 19 17 25 25 C 1.48559 * 104.22073 * 320.51764 * 12 11 10 26 26 C 1.53779 * 113.61275 * 69.14926 * 4 2 1 27 27 C 1.53959 * 87.02083 * 89.22916 * 26 4 2 28 28 C 1.53781 * 87.10807 * 25.36490 * 27 26 4 29 29 H 1.09005 * 109.47228 * 296.20524 * 1 2 3 30 30 H 1.08996 * 109.47175 * 56.20706 * 1 2 3 31 31 H 1.09002 * 109.47268 * 176.21024 * 1 2 3 32 32 H 1.08999 * 109.47386 * 183.95279 * 3 2 1 33 33 H 1.08998 * 109.47015 * 303.95564 * 3 2 1 34 34 H 1.09001 * 109.47088 * 63.95402 * 3 2 1 35 35 H 0.96997 * 120.00193 * 355.21776 * 7 5 4 36 36 H 1.08993 * 110.32739 * 359.90130 * 10 8 7 37 37 H 1.09003 * 110.32037 * 122.10779 * 10 8 7 38 38 H 1.09000 * 110.41151 * 142.63313 * 11 10 8 39 39 H 1.09005 * 110.41360 * 265.07656 * 11 10 8 40 40 H 1.08996 * 109.47580 * 50.12522 * 13 12 11 41 41 H 1.09004 * 109.46696 * 170.13138 * 13 12 11 42 42 H 0.96996 * 120.00517 * 0.02562 * 16 14 13 43 43 H 0.96994 * 119.99934 * 179.97438 * 20 19 17 44 44 H 1.09007 * 110.40705 * 280.70331 * 25 12 11 45 45 H 1.08998 * 110.41189 * 158.26148 * 25 12 11 46 46 H 1.09004 * 113.61566 * 203.74699 * 26 4 2 47 47 H 1.08993 * 113.61574 * 334.65204 * 26 4 2 48 48 H 1.08995 * 113.53696 * 270.81413 * 27 26 4 49 49 H 1.09000 * 113.66505 * 139.93399 * 27 26 4 50 50 H 1.09004 * 113.61232 * 220.08851 * 28 27 26 51 51 H 1.09000 * 113.61876 * 89.19313 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.5974 -0.1837 2.4695 6 8 0.9057 0.8114 2.5138 7 7 2.0101 -0.7691 3.6112 8 6 1.7125 -0.1457 4.9031 9 1 0.7433 0.3520 4.8682 10 6 2.8187 0.8614 5.2796 11 6 3.4138 0.3282 6.6005 12 7 3.1051 -1.1250 6.5906 13 6 3.1497 -1.6820 7.9492 14 6 4.5759 -1.7057 8.4357 15 8 5.4673 -1.2983 7.7212 16 7 4.8606 -2.1787 9.6652 17 6 6.1580 -2.2009 10.1077 18 1 6.9518 -1.8388 9.4711 19 6 6.4516 -2.6890 11.3750 20 7 5.4858 -3.1300 12.1494 21 14 8.2193 -2.7184 11.9782 22 1 8.5276 -1.4412 12.6701 23 1 8.4013 -3.8496 12.9228 24 1 9.1344 -2.8878 10.8210 25 6 1.7323 -1.2027 6.0281 26 6 1.7479 -2.2797 1.0283 27 6 3.0925 -2.3644 0.2832 28 6 3.4966 -1.0804 1.0267 29 1 -0.3634 0.4538 0.9221 30 1 -0.3633 0.5716 -0.8540 31 1 -0.3634 -1.0254 -0.0679 32 1 3.0827 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 2.5044 -1.6030 3.5775 36 1 3.5840 0.8906 4.5041 37 1 2.3925 1.8533 5.4295 38 1 4.4918 0.4876 6.6235 39 1 2.9388 0.8118 7.4541 40 1 2.5488 -1.0632 8.6155 41 1 2.7525 -2.6970 7.9389 42 1 4.1477 -2.5042 10.2368 43 1 5.6908 -3.4710 13.0339 44 1 0.9942 -0.9585 6.7921 45 1 1.5443 -2.1958 5.6201 46 1 1.7487 -2.7928 1.9901 47 1 0.8882 -2.5381 0.4103 48 1 3.0015 -2.2343 -0.7951 49 1 3.6903 -3.2339 0.5567 50 1 4.0466 -0.3718 0.4072 51 1 3.9764 -1.2649 1.9879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690092967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:30 Heat of formation + Delta-G solvation = -24.161551 kcal Electronic energy + Delta-G solvation = -30355.402502 eV Core-core repulsion = 26290.996749 eV Total energy + Delta-G solvation = -4064.405752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.23649 -39.36128 -38.12030 -37.35178 -35.53299 -34.14150 -33.69834 -31.40231 -30.88252 -28.66443 -28.18309 -27.06319 -26.14352 -25.53082 -24.25082 -23.27023 -21.56142 -21.24769 -20.54579 -19.30292 -19.08885 -17.90324 -17.61407 -16.76276 -16.12115 -15.92348 -15.59508 -15.27124 -14.91054 -14.86987 -14.59834 -14.43982 -14.24633 -14.09739 -13.80193 -13.67543 -13.20345 -12.75607 -12.52531 -12.45127 -12.22546 -12.06821 -12.01257 -11.97303 -11.84200 -11.68276 -11.59271 -11.50827 -11.48103 -11.12702 -10.98739 -10.92320 -10.73086 -10.55766 -10.40765 -10.23735 -10.23062 -9.51419 -9.18934 -8.54870 -8.35180 -8.08572 -7.97133 -6.43553 -3.84409 2.36162 3.00745 3.16182 3.25039 3.30771 3.53935 3.87966 3.99162 4.23176 4.23932 4.25338 4.43292 4.51246 4.61312 4.75374 4.84289 5.05139 5.07511 5.18153 5.25451 5.30816 5.31240 5.33660 5.38688 5.41210 5.42021 5.59081 5.61468 5.64317 5.67233 5.68181 5.73792 5.77200 5.78774 5.86547 5.88492 5.92975 6.00464 6.13336 6.24065 6.40480 6.43122 6.69544 6.70239 7.03290 7.12387 7.38830 7.53351 8.04103 8.06793 8.59706 9.16324 9.52413 10.04131 10.74228 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.002136 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.514177 B =13106.512888 C =13489.707427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.497 5.497 3 C 0.010 3.990 4 C 0.060 3.940 5 C 0.502 3.498 6 O -0.545 6.545 7 N -0.711 5.711 8 C 0.142 3.858 9 H 0.093 0.907 10 C -0.132 4.132 11 C 0.037 3.963 12 N -0.483 5.483 13 C 0.034 3.966 14 C 0.445 3.555 15 O -0.578 6.578 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.021 3.979 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.123 4.123 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.404 0.596 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.056 0.944 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 2.879 -20.533 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.219 5.219 3 C -0.138 4.138 4 C -0.034 4.034 5 C 0.287 3.713 6 O -0.423 6.423 7 N -0.363 5.363 8 C 0.037 3.963 9 H 0.111 0.889 10 C -0.171 4.171 11 C -0.090 4.090 12 N -0.207 5.207 13 C -0.098 4.098 14 C 0.230 3.770 15 O -0.461 6.461 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.108 4.108 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.161 4.161 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.694 3.259 -21.538 24.266 hybrid contribution -0.298 0.235 2.178 2.211 sum -10.992 3.494 -19.360 22.535 Atomic orbital electron populations 1.22534 0.87000 1.01983 1.02283 1.62333 1.08598 1.14370 1.36633 1.22539 1.00299 0.88699 1.02275 1.22488 0.98489 0.95397 0.87006 1.21614 0.79217 0.84054 0.86408 1.90605 1.37936 1.26181 1.87604 1.46196 1.57484 1.27267 1.05342 1.21673 0.99031 0.93471 0.82133 0.88907 1.22771 0.97880 0.98185 0.98286 1.23184 1.03258 0.87262 0.95334 1.65181 1.20613 1.14967 1.19980 1.22070 0.97383 1.00895 0.89458 1.19664 0.89458 0.84618 0.83236 1.90502 1.47846 1.51752 1.56046 1.41862 1.09493 1.55458 1.13376 1.19685 0.84725 1.39152 0.99186 0.87939 1.25260 0.99721 0.96943 0.96068 1.69610 1.32274 1.42334 1.10148 0.85860 0.82043 0.77761 0.78649 1.20440 1.20925 1.19407 1.23444 0.91691 0.99424 0.96225 1.23038 0.99673 0.91768 1.01576 1.22749 0.95810 0.97338 1.00306 1.23035 0.92454 0.98667 1.01902 0.92692 0.91512 0.91839 0.91725 0.91495 0.92688 0.75980 0.90652 0.91063 0.88063 0.94241 0.93130 0.89251 0.77524 0.91881 0.92582 0.89570 0.89354 0.90187 0.89213 0.90951 0.90176 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.16 60.06 0.55 0.64 16 2 N -0.50 -4.82 4.80 -235.81 -1.13 -5.95 16 3 C 0.01 0.09 9.16 60.07 0.55 0.65 16 4 C 0.06 0.56 0.40 -131.94 -0.05 0.51 16 5 C 0.50 5.74 6.54 -10.98 -0.07 5.67 16 6 O -0.55 -7.80 11.87 5.56 0.07 -7.73 16 7 N -0.71 -7.49 4.57 -52.46 -0.24 -7.73 16 8 C 0.14 1.65 3.42 -66.55 -0.23 1.42 16 9 H 0.09 1.12 7.54 -51.93 -0.39 0.73 16 10 C -0.13 -1.70 6.79 -25.35 -0.17 -1.87 16 11 C 0.04 0.58 5.80 -2.18 -0.01 0.57 16 12 N -0.48 -7.50 5.06 -231.40 -1.17 -8.67 16 13 C 0.03 0.58 5.30 -4.97 -0.03 0.55 16 14 C 0.45 10.23 7.59 -10.98 -0.08 10.15 16 15 O -0.58 -15.19 14.42 5.55 0.08 -15.11 16 16 N -0.57 -14.08 5.29 -10.96 -0.06 -14.14 16 17 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 18 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 21 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 C 0.02 0.24 6.10 -2.18 -0.01 0.23 16 26 C -0.12 -0.92 7.05 -25.83 -0.18 -1.10 16 27 C -0.12 -0.89 8.00 -25.82 -0.21 -1.09 16 28 C -0.12 -1.02 7.05 -25.92 -0.18 -1.21 16 29 H 0.05 0.64 5.81 -51.93 -0.30 0.33 16 30 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.06 0.53 6.83 -51.93 -0.35 0.17 16 32 H 0.06 0.59 6.84 -51.93 -0.36 0.23 16 33 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.05 0.66 5.83 -51.93 -0.30 0.36 16 35 H 0.40 3.82 6.92 -40.82 -0.28 3.54 16 36 H 0.07 1.02 7.95 -51.93 -0.41 0.61 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.88 6.91 -51.93 -0.36 1.52 16 39 H 0.04 0.59 7.82 -51.93 -0.41 0.19 16 40 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 41 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 42 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.06 0.61 8.00 -51.92 -0.42 0.19 16 45 H 0.09 0.90 8.01 -51.93 -0.42 0.49 16 46 H 0.09 0.60 7.15 -51.93 -0.37 0.23 16 47 H 0.08 0.59 6.90 -51.93 -0.36 0.23 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.68 6.91 -51.93 -0.36 0.32 16 51 H 0.09 0.79 7.30 -51.93 -0.38 0.41 16 LS Contribution 394.21 15.07 5.94 5.94 Total: -1.00 -31.67 394.21 -9.43 -41.10 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -8.24 Total: 12.79 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -0.37 Total: 7.25 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -1.88 Total: -60.09 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.15 Total: -22.84 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.67 -9.43 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690092967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.939 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds