Wall clock time and date at job start Tue Mar 31 2020 20:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 110.99902 * 2 1 4 4 C 1.46898 * 111.00126 * 123.95037 * 2 1 3 5 5 C 1.50702 * 112.85230 * 297.95213 * 4 2 1 6 6 O 1.21279 * 119.99631 * 0.41450 * 5 4 2 7 7 N 1.34777 * 120.00039 * 180.40641 * 5 4 2 8 8 C 1.46503 * 119.99822 * 175.20447 * 7 5 4 9 9 H 1.09000 * 110.28436 * 34.30573 * 8 7 5 10 10 C 1.54259 * 110.32428 * 272.17713 * 8 7 5 11 11 C 1.54379 * 105.05875 * 241.00096 * 10 8 7 12 12 N 1.48565 * 104.59582 * 23.85554 * 11 10 8 13 13 C 1.46901 * 110.99833 * 200.95961 * 12 11 10 14 14 C 1.50703 * 109.46912 * 290.12172 * 13 12 11 15 15 O 1.21284 * 120.00141 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99601 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99859 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99458 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00136 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00117 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00118 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46960 * 90.00377 * 21 19 17 23 23 H 1.48497 * 109.47384 * 210.00330 * 21 19 17 24 24 H 1.48493 * 109.47162 * 330.00743 * 21 19 17 25 25 C 1.48559 * 104.22073 * 320.51764 * 12 11 10 26 26 C 1.53779 * 113.61275 * 69.14926 * 4 2 1 27 27 C 1.53959 * 87.02083 * 89.22916 * 26 4 2 28 28 C 1.53781 * 87.10807 * 25.36490 * 27 26 4 29 29 H 1.09005 * 109.47228 * 296.20524 * 1 2 3 30 30 H 1.08996 * 109.47175 * 56.20706 * 1 2 3 31 31 H 1.09002 * 109.47268 * 176.21024 * 1 2 3 32 32 H 1.08999 * 109.47386 * 183.95279 * 3 2 1 33 33 H 1.08998 * 109.47015 * 303.95564 * 3 2 1 34 34 H 1.09001 * 109.47088 * 63.95402 * 3 2 1 35 35 H 0.96997 * 120.00193 * 355.21776 * 7 5 4 36 36 H 1.08993 * 110.32739 * 359.90130 * 10 8 7 37 37 H 1.09003 * 110.32037 * 122.10779 * 10 8 7 38 38 H 1.09000 * 110.41151 * 142.63313 * 11 10 8 39 39 H 1.09005 * 110.41360 * 265.07656 * 11 10 8 40 40 H 1.08996 * 109.47580 * 50.12522 * 13 12 11 41 41 H 1.09004 * 109.46696 * 170.13138 * 13 12 11 42 42 H 0.96996 * 120.00517 * 0.02562 * 16 14 13 43 43 H 0.96994 * 119.99934 * 179.97438 * 20 19 17 44 44 H 1.09007 * 110.40705 * 280.70331 * 25 12 11 45 45 H 1.08998 * 110.41189 * 158.26148 * 25 12 11 46 46 H 1.09004 * 113.61566 * 203.74699 * 26 4 2 47 47 H 1.08993 * 113.61574 * 334.65204 * 26 4 2 48 48 H 1.08995 * 113.53696 * 270.81413 * 27 26 4 49 49 H 1.09000 * 113.66505 * 139.93399 * 27 26 4 50 50 H 1.09004 * 113.61232 * 220.08851 * 28 27 26 51 51 H 1.09000 * 113.61876 * 89.19313 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.5974 -0.1837 2.4695 6 8 0.9057 0.8114 2.5138 7 7 2.0101 -0.7691 3.6112 8 6 1.7125 -0.1457 4.9031 9 1 0.7433 0.3520 4.8682 10 6 2.8187 0.8614 5.2796 11 6 3.4138 0.3282 6.6005 12 7 3.1051 -1.1250 6.5906 13 6 3.1497 -1.6820 7.9492 14 6 4.5759 -1.7057 8.4357 15 8 5.4673 -1.2983 7.7212 16 7 4.8606 -2.1787 9.6652 17 6 6.1580 -2.2009 10.1077 18 1 6.9518 -1.8388 9.4711 19 6 6.4516 -2.6890 11.3750 20 7 5.4858 -3.1300 12.1494 21 14 8.2193 -2.7184 11.9782 22 1 8.5276 -1.4412 12.6701 23 1 8.4013 -3.8496 12.9228 24 1 9.1344 -2.8878 10.8210 25 6 1.7323 -1.2027 6.0281 26 6 1.7479 -2.2797 1.0283 27 6 3.0925 -2.3644 0.2832 28 6 3.4966 -1.0804 1.0267 29 1 -0.3634 0.4538 0.9221 30 1 -0.3633 0.5716 -0.8540 31 1 -0.3634 -1.0254 -0.0679 32 1 3.0827 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 2.5044 -1.6030 3.5775 36 1 3.5840 0.8906 4.5041 37 1 2.3925 1.8533 5.4295 38 1 4.4918 0.4876 6.6235 39 1 2.9388 0.8118 7.4541 40 1 2.5488 -1.0632 8.6155 41 1 2.7525 -2.6970 7.9389 42 1 4.1477 -2.5042 10.2368 43 1 5.6908 -3.4710 13.0339 44 1 0.9942 -0.9585 6.7921 45 1 1.5443 -2.1958 5.6201 46 1 1.7487 -2.7928 1.9901 47 1 0.8882 -2.5381 0.4103 48 1 3.0015 -2.2343 -0.7951 49 1 3.6903 -3.2339 0.5567 50 1 4.0466 -0.3718 0.4072 51 1 3.9764 -1.2649 1.9879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690092967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:30 Heat of formation + Delta-G solvation = -48.951223 kcal Electronic energy + Delta-G solvation = -30356.477463 eV Core-core repulsion = 26290.996749 eV Total energy + Delta-G solvation = -4065.480713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04905 -40.64346 -39.49802 -38.48728 -36.39419 -35.90245 -34.86525 -33.28890 -32.17810 -29.71187 -28.91750 -28.36058 -27.20024 -26.18016 -25.96297 -24.07611 -22.55681 -22.29394 -21.53033 -20.96709 -19.99304 -19.83321 -18.41687 -17.76783 -17.62084 -16.86526 -16.80448 -16.49387 -16.19028 -15.97483 -15.77521 -15.64547 -15.47470 -15.34708 -14.90068 -14.73289 -14.48509 -14.06138 -13.58620 -13.50626 -13.37772 -13.19523 -13.03855 -12.95898 -12.91416 -12.79588 -12.67382 -12.63036 -12.45913 -12.40626 -12.32942 -12.14462 -12.12092 -11.88559 -11.62108 -11.47019 -11.20527 -11.03331 -10.36081 -10.07344 -9.99182 -9.40585 -9.17646 -8.45864 -5.94082 1.37847 1.41729 1.49161 1.54151 2.07463 2.14750 2.28683 2.79866 2.81731 3.21009 3.36463 3.47592 3.54404 3.59866 3.77160 3.81548 3.91141 4.10227 4.16430 4.24523 4.28937 4.41118 4.43543 4.46766 4.54005 4.58872 4.65971 4.66891 4.70329 4.70754 4.73516 4.82005 4.92945 4.94462 5.01642 5.03981 5.11407 5.13260 5.14428 5.20906 5.41483 5.41670 5.50316 5.81497 5.86889 5.93858 5.96395 6.07078 6.53502 6.61929 7.14444 7.20161 7.58294 8.14298 8.71573 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.002136 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.514177 B =13106.512888 C =13489.707427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.496 5.496 3 C 0.013 3.987 4 C 0.055 3.945 5 C 0.500 3.500 6 O -0.575 6.575 7 N -0.704 5.704 8 C 0.149 3.851 9 H 0.094 0.906 10 C -0.123 4.123 11 C 0.040 3.960 12 N -0.500 5.500 13 C 0.046 3.954 14 C 0.443 3.557 15 O -0.615 6.615 16 N -0.576 5.576 17 C -0.330 4.330 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.991 3.009 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.273 1.273 25 C 0.028 3.972 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.124 4.124 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.411 0.589 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 1.729 -21.138 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.218 5.218 3 C -0.135 4.135 4 C -0.039 4.039 5 C 0.286 3.714 6 O -0.456 6.456 7 N -0.356 5.356 8 C 0.043 3.957 9 H 0.112 0.888 10 C -0.162 4.162 11 C -0.088 4.088 12 N -0.224 5.224 13 C -0.086 4.086 14 C 0.230 3.770 15 O -0.501 6.501 16 N -0.214 5.214 17 C -0.459 4.459 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.099 4.099 26 C -0.155 4.155 27 C -0.152 4.152 28 C -0.162 4.162 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.248 0.752 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.109 0.891 49 H 0.102 0.898 50 H 0.095 0.905 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.655 2.088 -22.144 25.111 hybrid contribution -0.021 0.643 2.310 2.398 sum -11.676 2.731 -19.835 23.178 Atomic orbital electron populations 1.22521 0.86794 1.02682 1.01497 1.62388 1.08756 1.14083 1.36550 1.22504 1.00671 0.88877 1.01466 1.22657 0.99210 0.96379 0.85696 1.22053 0.78551 0.83569 0.87215 1.90602 1.39369 1.27553 1.88047 1.46142 1.57227 1.27355 1.04890 1.21553 0.98294 0.93189 0.82639 0.88845 1.22668 0.97959 0.98985 0.96579 1.23033 1.01001 0.87894 0.96866 1.65113 1.23537 1.14695 1.19074 1.21943 0.93030 1.03006 0.90574 1.20746 0.91779 0.82379 0.82103 1.90483 1.49975 1.52763 1.56871 1.41935 1.08799 1.56336 1.14307 1.19622 0.85573 1.40896 0.99834 0.90415 1.26009 1.03577 0.96088 0.95684 1.69668 1.33779 1.42308 1.10454 0.84956 0.77327 0.78232 0.78008 1.19788 1.19569 1.19793 1.23496 0.89711 1.00458 0.96280 1.23079 1.00105 0.90009 1.02271 1.22702 0.95488 0.96906 1.00125 1.23057 0.91673 0.99430 1.02009 0.95031 0.90504 0.90629 0.91263 0.90345 0.95173 0.75166 0.91730 0.90309 0.91995 0.93867 0.91122 0.86696 0.77040 0.91370 0.90803 0.87637 0.88373 0.89702 0.89138 0.89795 0.90506 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.16 127.69 1.17 1.40 16 2 N -0.50 -9.08 4.80 -899.96 -4.32 -13.40 16 3 C 0.01 0.25 9.16 127.69 1.17 1.42 16 4 C 0.05 0.96 0.40 3.31 0.00 0.96 16 5 C 0.50 11.02 6.54 87.66 0.57 11.59 16 6 O -0.58 -16.38 11.87 -3.03 -0.04 -16.41 16 7 N -0.70 -13.84 4.57 -438.29 -2.00 -15.85 16 8 C 0.15 3.21 3.42 45.89 0.16 3.37 16 9 H 0.09 2.09 7.54 -2.39 -0.02 2.07 16 10 C -0.12 -3.10 6.79 31.49 0.21 -2.89 16 11 C 0.04 1.24 5.80 86.45 0.50 1.74 16 12 N -0.50 -14.80 5.06 -886.01 -4.49 -19.29 16 13 C 0.05 1.49 5.30 85.56 0.45 1.94 16 14 C 0.44 20.48 7.59 87.66 0.66 21.15 16 15 O -0.62 -33.24 14.42 -3.04 -0.04 -33.29 16 16 N -0.58 -29.03 5.29 -306.99 -1.62 -30.66 16 17 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 20 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 21 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 C 0.03 0.59 6.10 86.45 0.53 1.11 16 26 C -0.12 -1.50 7.05 31.18 0.22 -1.28 16 27 C -0.11 -1.38 8.00 31.18 0.25 -1.13 16 28 C -0.12 -1.91 7.05 31.12 0.22 -1.69 16 29 H 0.03 0.72 5.81 -2.38 -0.01 0.71 16 30 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 31 H 0.08 1.13 6.83 -2.39 -0.02 1.11 16 32 H 0.07 1.23 6.84 -2.39 -0.02 1.22 16 33 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 34 H 0.03 0.74 5.83 -2.39 -0.01 0.72 16 35 H 0.41 6.99 6.92 -92.71 -0.64 6.35 16 36 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 2.40 6.91 -2.39 -0.02 2.39 16 39 H 0.04 1.28 7.82 -2.38 -0.02 1.26 16 40 H 0.07 2.05 7.88 -2.39 -0.02 2.03 16 41 H 0.12 3.19 8.13 -2.38 -0.02 3.17 16 42 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 43 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.07 1.33 8.00 -2.38 -0.02 1.31 16 45 H 0.11 1.82 8.01 -2.39 -0.02 1.80 16 46 H 0.10 1.07 7.15 -2.38 -0.02 1.05 16 47 H 0.08 1.03 6.90 -2.39 -0.02 1.02 16 48 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.08 1.23 6.91 -2.38 -0.02 1.22 16 51 H 0.09 1.43 7.30 -2.39 -0.02 1.42 16 Total: -1.00 -69.70 394.21 -3.22 -72.92 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.42 Total: 40.52 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 7.40 Total: 19.71 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -12.15 Total: -128.19 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.08 Total: -49.70 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -69.70 -3.22 -72.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690092967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.973 kcal (2) G-P(sol) polarization free energy of solvation -69.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds