Wall clock time and date at job start Tue Mar 31 2020 21:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.98813 * 2 1 4 4 C 1.54474 * 109.98852 * 238.97360 * 2 1 3 5 5 C 1.54370 * 102.95014 * 219.35565 * 4 2 1 6 6 C 1.54140 * 102.47866 * 34.44339 * 5 4 2 7 7 N 1.47085 * 109.87861 * 121.07981 * 2 1 3 8 8 C 1.34777 * 125.62718 * 298.45874 * 7 2 1 9 9 O 1.21278 * 120.00082 * 353.89407 * 8 7 2 10 10 C 1.50706 * 119.99692 * 173.88585 * 8 7 2 11 11 C 1.52998 * 115.54839 * 67.24486 * 10 8 7 12 12 C 1.53002 * 109.47260 * 39.31269 * 11 10 8 13 13 F 1.39900 * 109.46925 * 174.74081 * 12 11 10 14 14 C 1.53001 * 117.51600 * 212.93955 * 10 8 7 15 15 C 1.52995 * 117.50193 * 281.56927 * 10 8 7 16 16 C 1.52103 * 110.56485 * 152.40796 * 5 4 2 17 17 C 1.53346 * 109.44329 * 182.79017 * 16 5 4 18 18 N 1.46925 * 108.68822 * 306.69943 * 17 16 5 19 19 C 1.36941 * 120.55258 * 234.36816 * 18 17 16 20 20 H 1.08003 * 119.99841 * 147.82760 * 19 18 17 21 21 C 1.38805 * 119.99845 * 327.82352 * 19 18 17 22 22 N 1.31624 * 120.00255 * 347.20835 * 21 19 18 23 23 Si 1.86808 * 119.99949 * 167.20344 * 21 19 18 24 24 H 1.48498 * 109.46974 * 90.00134 * 23 21 19 25 25 H 1.48495 * 109.47093 * 210.00344 * 23 21 19 26 26 H 1.48501 * 109.46990 * 330.00165 * 23 21 19 27 27 C 1.46942 * 118.89477 * 54.34422 * 18 17 16 28 28 C 1.52116 * 110.54624 * 276.49640 * 5 4 2 29 29 H 1.08995 * 109.46809 * 300.37411 * 1 2 3 30 30 H 1.09000 * 109.46669 * 60.37935 * 1 2 3 31 31 H 1.08996 * 109.46749 * 180.37292 * 1 2 3 32 32 H 1.08996 * 110.86640 * 100.89931 * 4 2 1 33 33 H 1.09004 * 110.68101 * 337.71929 * 4 2 1 34 34 H 1.09000 * 110.37360 * 205.08654 * 6 5 4 35 35 H 1.09000 * 110.46474 * 82.78875 * 6 5 4 36 36 H 1.09003 * 109.46772 * 279.31736 * 11 10 8 37 37 H 1.09000 * 109.47350 * 159.31526 * 11 10 8 38 38 H 1.08991 * 109.47185 * 54.74236 * 12 11 10 39 39 H 1.08996 * 109.47038 * 294.73725 * 12 11 10 40 40 H 1.09003 * 117.49534 * 214.97239 * 14 10 8 41 41 H 1.08998 * 117.50095 * 359.97438 * 14 10 8 42 42 H 1.09005 * 117.49669 * 359.97320 * 15 10 8 43 43 H 1.08998 * 117.50152 * 144.97979 * 15 10 8 44 44 H 1.09004 * 109.47348 * 302.77973 * 16 5 4 45 45 H 1.08995 * 109.47806 * 62.79264 * 16 5 4 46 46 H 1.08998 * 109.60053 * 186.93630 * 17 16 5 47 47 H 1.09001 * 109.73137 * 66.54170 * 17 16 5 48 48 H 0.96996 * 119.99771 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.59700 * 185.89020 * 27 18 17 50 50 H 1.09004 * 109.73043 * 65.49142 * 27 18 17 51 51 H 1.09001 * 109.47471 * 297.18679 * 28 5 4 52 52 H 1.09001 * 109.47370 * 57.20487 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0581 -0.7482 -1.2440 5 6 3.2695 -1.5284 -0.6901 6 6 2.8123 -1.8832 0.7385 7 7 2.0302 -0.7141 1.1846 8 6 1.8062 -0.3620 2.4662 9 8 1.2366 0.6785 2.7185 10 6 2.2635 -1.2614 3.5856 11 6 3.7790 -1.3947 3.7477 12 6 4.4388 -0.0346 3.5115 13 9 5.8093 -0.1288 3.7766 14 6 1.4112 -1.2984 4.8557 15 6 1.4088 -2.4913 3.8977 16 6 3.5107 -2.7898 -1.5051 17 6 4.6736 -3.5792 -0.8919 18 7 5.8323 -2.6853 -0.7612 19 6 7.0405 -3.0274 -1.3076 20 1 7.7021 -2.2589 -1.6792 21 6 7.4148 -4.3619 -1.3837 22 7 6.7407 -5.2737 -0.7153 23 14 8.8752 -4.8638 -2.4348 24 1 10.1129 -4.8208 -1.6154 25 1 8.6671 -6.2427 -2.9453 26 1 9.0066 -3.9268 -3.5794 27 6 5.6729 -1.4179 -0.0350 28 6 4.5045 -0.6409 -0.6532 29 1 -0.3633 0.5196 0.8866 30 1 -0.3633 0.5079 -0.8934 31 1 -0.3633 -1.0276 0.0067 32 1 2.3718 -0.0454 -2.0157 33 1 1.3029 -1.4323 -1.6311 34 1 3.6755 -2.0324 1.3872 35 1 2.1875 -2.7762 0.7279 36 1 4.1601 -2.1141 3.0229 37 1 4.0077 -1.7392 4.7563 38 1 3.9909 0.7064 4.1735 39 1 4.2892 0.2666 2.4747 40 1 1.9302 -1.4178 5.8068 41 1 0.5197 -0.6718 4.8820 42 1 0.5153 -2.6498 3.2937 43 1 1.9261 -3.3956 4.2182 44 1 2.6105 -3.4045 -1.4982 45 1 3.7572 -2.5178 -2.5314 46 1 4.9292 -4.4169 -1.5407 47 1 4.3870 -3.9525 0.0913 48 1 7.0021 -6.2062 -0.7689 49 1 6.5876 -0.8309 -0.1190 50 1 5.4630 -1.6195 1.0155 51 1 4.7651 -0.3387 -1.6675 52 1 4.2979 0.2443 -0.0518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691689529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:23 Heat of formation + Delta-G solvation = -62.159428 kcal Electronic energy + Delta-G solvation = -32659.723846 eV Core-core repulsion = 28573.750420 eV Total energy + Delta-G solvation = -4085.973426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.67307 -41.99421 -40.21681 -38.09662 -37.32141 -34.75899 -33.15202 -32.54412 -32.10927 -31.52626 -28.75273 -27.00273 -26.11480 -25.41397 -24.32555 -23.80883 -23.38863 -22.68840 -21.43565 -20.05187 -19.38808 -18.40553 -17.97153 -17.47436 -17.14559 -16.95800 -16.72137 -16.38633 -15.79370 -15.62908 -15.55199 -15.37017 -15.02902 -14.87732 -14.76731 -14.54524 -14.23134 -14.03448 -13.89220 -13.41319 -13.36373 -13.12963 -13.03999 -12.95982 -12.82683 -12.58126 -12.51533 -12.46392 -12.37971 -12.23509 -12.01852 -11.92105 -11.87622 -11.81692 -11.51644 -11.40778 -11.08315 -10.97979 -10.94284 -10.71970 -10.48096 -9.65374 -8.54344 -7.83460 -5.32810 1.47617 1.48220 1.49369 1.57923 1.89140 2.53185 2.66424 3.23612 3.30798 3.38232 3.52841 3.65765 3.72595 3.73793 3.78610 3.86807 3.91306 4.04194 4.12792 4.13516 4.24188 4.32516 4.38321 4.42688 4.51963 4.57309 4.66900 4.70123 4.72973 4.74937 4.79560 4.81283 4.87361 4.92473 4.94950 4.95672 5.05002 5.08619 5.13215 5.17922 5.21844 5.26656 5.33475 5.38677 5.42409 5.44932 5.58387 5.69933 5.85197 6.46068 6.49104 7.09795 7.21847 7.91224 8.43340 9.21544 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012961 B = 0.004183 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.756799 B = 6692.722942 C = 7650.213083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 H 0.066 0.934 4 C -0.109 4.109 5 C -0.054 4.054 6 C 0.112 3.888 7 N -0.602 5.602 8 C 0.565 3.435 9 O -0.572 6.572 10 C -0.172 4.172 11 C -0.105 4.105 12 C 0.062 3.938 13 F -0.228 7.228 14 C -0.132 4.132 15 C -0.141 4.141 16 C -0.112 4.112 17 C 0.180 3.820 18 N -0.604 5.604 19 C -0.263 4.263 20 H 0.057 0.943 21 C -0.041 4.041 22 N -0.930 5.930 23 Si 0.960 3.040 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.272 1.272 27 C 0.146 3.854 28 C -0.105 4.105 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.004 0.996 48 H 0.250 0.750 49 H 0.040 0.960 50 H 0.012 0.988 51 H 0.061 0.939 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 7.310 5.358 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.028 3.972 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.054 4.054 6 C -0.011 4.011 7 N -0.334 5.334 8 C 0.354 3.646 9 O -0.452 6.452 10 C -0.175 4.175 11 C -0.142 4.142 12 C 0.007 3.993 13 F -0.209 7.209 14 C -0.170 4.170 15 C -0.178 4.178 16 C -0.151 4.151 17 C 0.054 3.946 18 N -0.328 5.328 19 C -0.394 4.394 20 H 0.075 0.925 21 C -0.237 4.237 22 N -0.575 5.575 23 Si 0.788 3.212 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.197 1.197 27 C 0.021 3.979 28 C -0.144 4.144 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.138 0.862 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.022 0.978 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.030 0.970 51 H 0.080 0.920 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.495 7.726 5.564 17.342 hybrid contribution 1.306 -0.509 -0.476 1.481 sum -13.189 7.216 5.088 15.871 Atomic orbital electron populations 1.22038 0.93861 1.02393 1.02609 1.21694 0.94989 0.95979 0.84489 0.91628 1.22758 0.96663 0.99338 0.95887 1.20874 0.94711 0.95889 0.93966 1.22477 0.94914 0.87913 0.95748 1.48652 1.51633 1.28347 1.04783 1.19401 0.77950 0.85136 0.82127 1.90653 1.44942 1.25776 1.83831 1.21214 0.94232 1.03774 0.98271 1.21676 0.90800 0.96911 1.04842 1.22035 0.75667 0.99412 1.02150 1.92759 1.34798 1.97600 1.95757 1.23164 1.00704 1.00083 0.93012 1.23146 1.00400 0.92299 1.01981 1.21848 0.98840 0.95562 0.98850 1.20599 0.85213 0.92061 0.96676 1.44179 1.07061 1.19298 1.62237 1.19395 0.96105 0.91549 1.32332 0.92531 1.25772 1.00445 0.97113 1.00332 1.70121 1.43074 1.00823 1.43513 0.85397 0.79710 0.77088 0.78956 1.21490 1.21728 1.19721 1.21003 0.96264 0.87460 0.93206 1.21672 0.94690 0.97025 1.00989 0.93621 0.89700 0.92058 0.88978 0.88869 0.90816 0.90718 0.90771 0.87867 0.89488 0.92127 0.85796 0.88478 0.88177 0.86202 0.90607 0.92446 0.93310 0.97838 0.94116 0.94159 0.96995 0.92047 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.11 71.98 0.66 -2.38 16 2 C 0.13 2.99 3.08 45.38 0.14 3.13 16 3 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.11 -2.30 5.43 31.56 0.17 -2.13 16 5 C -0.05 -1.48 0.54 -51.92 -0.03 -1.51 16 6 C 0.11 3.01 4.59 86.56 0.40 3.41 16 7 N -0.60 -15.33 3.06 -788.76 -2.41 -17.74 16 8 C 0.56 15.31 5.33 87.66 0.47 15.77 16 9 O -0.57 -18.62 16.02 -3.02 -0.05 -18.67 16 10 C -0.17 -3.85 1.58 -52.93 -0.08 -3.93 16 11 C -0.10 -2.49 5.21 30.59 0.16 -2.33 16 12 C 0.06 1.66 6.90 71.98 0.50 2.15 16 13 F -0.23 -7.25 17.36 44.97 0.78 -6.47 16 14 C -0.13 -2.38 9.70 30.59 0.30 -2.08 16 15 C -0.14 -2.53 9.95 30.59 0.30 -2.23 16 16 C -0.11 -3.60 4.83 30.41 0.15 -3.46 16 17 C 0.18 7.92 5.00 86.41 0.43 8.35 16 18 N -0.60 -28.87 2.96 -698.47 -2.07 -30.94 16 19 C -0.26 -14.19 9.55 84.03 0.80 -13.39 16 20 H 0.06 3.04 7.86 -2.91 -0.02 3.02 16 21 C -0.04 -2.21 4.99 84.86 0.42 -1.79 16 22 N -0.93 -53.10 11.22 21.65 0.24 -52.86 16 23 Si 0.96 44.14 29.57 68.60 2.03 46.17 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.15 5.91 6.20 86.41 0.54 6.45 16 28 C -0.10 -3.31 4.83 30.42 0.15 -3.17 16 29 H 0.04 1.10 7.09 -2.39 -0.02 1.09 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.78 8.01 -2.39 -0.02 1.76 16 33 H 0.09 1.71 7.70 -2.38 -0.02 1.69 16 34 H 0.07 2.27 3.26 -2.39 -0.01 2.27 16 35 H 0.07 1.92 7.97 -2.39 -0.02 1.90 16 36 H 0.07 2.04 6.01 -2.39 -0.01 2.03 16 37 H 0.10 2.08 7.94 -2.39 -0.02 2.06 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 1.74 7.44 -2.39 -0.02 1.73 16 40 H 0.12 1.72 8.08 -2.39 -0.02 1.70 16 41 H 0.10 1.89 8.03 -2.39 -0.02 1.87 16 42 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.05 2.50 6.19 -2.39 -0.01 2.48 16 47 H 0.00 0.16 7.64 -2.39 -0.02 0.15 16 48 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 49 H 0.04 1.69 7.93 -2.38 -0.02 1.67 16 50 H 0.01 0.50 6.58 -2.39 -0.02 0.49 16 51 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 52 H 0.06 1.77 7.85 -2.39 -0.02 1.76 16 Total: -1.00 -64.59 395.48 4.88 -59.70 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.90 Total: 19.92 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 5.47 Total: 0.89 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.24 Total: -101.55 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.78 Total: -6.47 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -64.59 4.88 -59.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691689529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.456 kcal (2) G-P(sol) polarization free energy of solvation -64.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds