Wall clock time and date at job start Tue Mar 31 2020 21:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48497 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46854 * 299.99923 * 3 2 1 6 6 H 1.48499 * 109.47155 * 59.99996 * 3 2 1 7 7 C 1.38817 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99835 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00437 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00390 * 174.60297 * 9 7 2 11 11 C 1.53001 * 110.01433 * 301.46337 * 10 9 7 12 12 N 1.46504 * 109.47170 * 303.89912 * 11 10 9 13 13 C 1.34777 * 120.00009 * 175.13263 * 12 11 10 14 14 O 1.21287 * 119.99553 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99845 * 179.72581 * 13 12 11 16 16 C 1.53004 * 109.47059 * 180.27265 * 15 13 12 17 17 C 1.52999 * 109.47224 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.47008 * 180.02562 * 17 16 15 19 19 C 1.53177 * 109.54517 * 294.55417 * 18 17 16 20 20 C 1.53092 * 109.16691 * 183.15485 * 19 18 17 21 21 O 1.42905 * 109.41285 * 57.60427 * 20 19 18 22 22 C 1.42900 * 114.09956 * 298.84487 * 21 20 19 23 23 C 1.53093 * 109.41745 * 61.15896 * 22 21 20 24 24 C 1.54261 * 110.07083 * 62.87781 * 10 9 7 25 25 C 1.54892 * 104.19481 * 95.70003 * 24 10 9 26 26 C 1.54887 * 102.74885 * 37.93904 * 25 24 10 27 27 C 1.53873 * 110.03230 * 180.02562 * 10 9 7 28 28 H 0.96995 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00117 * 354.60521 * 9 7 2 30 30 H 1.09004 * 109.46848 * 183.90351 * 11 10 9 31 31 H 1.09001 * 109.47429 * 63.90183 * 11 10 9 32 32 H 0.96994 * 119.99651 * 355.12890 * 12 11 10 33 33 H 1.08991 * 109.47231 * 300.27158 * 15 13 12 34 34 H 1.09005 * 109.47393 * 60.27755 * 15 13 12 35 35 H 1.09005 * 109.47051 * 300.00203 * 16 15 13 36 36 H 1.09002 * 109.47411 * 59.99563 * 16 15 13 37 37 H 1.09000 * 109.46834 * 299.99523 * 17 16 15 38 38 H 1.08996 * 109.47300 * 59.99732 * 17 16 15 39 39 H 1.09005 * 109.54641 * 54.82279 * 18 17 16 40 40 H 1.09001 * 109.51846 * 303.05662 * 19 18 17 41 41 H 1.08997 * 109.52412 * 63.24793 * 19 18 17 42 42 H 1.09002 * 109.47878 * 297.62390 * 20 19 18 43 43 H 1.08996 * 109.48396 * 177.59072 * 20 19 18 44 44 H 1.08999 * 109.47964 * 301.17381 * 22 21 20 45 45 H 1.08998 * 109.49283 * 181.15278 * 22 21 20 46 46 H 1.08996 * 109.52250 * 182.48527 * 23 22 21 47 47 H 1.09002 * 109.51928 * 62.29544 * 23 22 21 48 48 H 1.08993 * 110.48835 * 214.37552 * 24 10 9 49 49 H 1.09005 * 110.49054 * 337.02499 * 24 10 9 50 50 H 1.09000 * 110.75559 * 279.62556 * 25 24 10 51 51 H 1.08996 * 110.75675 * 156.26000 * 25 24 10 52 52 H 1.08999 * 110.48639 * 203.37990 * 26 25 24 53 53 H 1.09001 * 110.48243 * 80.73632 * 26 25 24 54 54 H 1.09000 * 110.03615 * 359.95040 * 27 10 9 55 55 H 1.08999 * 110.03078 * 121.38187 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0532 -3.6541 -0.1182 11 6 2.8623 -3.6732 -1.4167 12 7 1.9682 -3.4363 -2.5528 13 6 2.4756 -3.3118 -3.7951 14 8 3.6725 -3.3954 -3.9725 15 6 1.5553 -3.0743 -4.9646 16 6 2.3790 -2.9781 -6.2504 17 6 1.4447 -2.7363 -7.4376 18 6 2.2683 -2.6407 -8.7235 19 6 3.1642 -1.3996 -8.6671 20 6 3.9255 -1.2687 -9.9888 21 8 2.9927 -1.1956 -11.0690 22 6 2.1600 -2.3495 -11.2000 23 6 1.3278 -2.5237 -9.9268 24 6 2.9915 -3.8410 1.0919 25 6 2.1742 -4.7158 2.0747 26 6 1.4382 -5.6965 1.1283 27 6 1.0657 -4.8339 -0.0939 28 1 -0.4849 0.8400 -0.0004 29 1 0.3587 -2.3900 0.0791 30 1 3.3444 -4.6443 -1.5300 31 1 3.6219 -2.8922 -1.3831 32 1 1.0110 -3.3692 -2.4108 33 1 0.8502 -3.9014 -5.0459 34 1 1.0081 -2.1438 -4.8132 35 1 3.0842 -2.1509 -6.1691 36 1 2.9263 -3.9085 -6.4018 37 1 0.7393 -3.5632 -7.5191 38 1 0.8978 -1.8058 -7.2860 39 1 2.8854 -3.5331 -8.8285 40 1 2.5492 -0.5132 -8.5117 41 1 3.8743 -1.4999 -7.8462 42 1 4.5709 -2.1367 -10.1240 43 1 4.5324 -0.3636 -9.9707 44 1 2.7823 -3.2315 -11.3510 45 1 1.4952 -2.2231 -12.0544 46 1 0.7245 -3.4280 -10.0070 47 1 0.6757 -1.6600 -9.7969 48 1 3.9039 -4.3558 0.7912 49 1 3.2272 -2.8776 1.5443 50 1 1.4612 -4.1080 2.6316 51 1 2.8353 -5.2558 2.7525 52 1 0.5405 -6.0873 1.6072 53 1 2.0999 -6.5110 0.8335 54 1 0.0451 -4.4646 0.0071 55 1 1.1622 -5.4205 -1.0076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698797959.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:56 Heat of formation + Delta-G solvation = -131.457592 kcal Electronic energy + Delta-G solvation = -30185.711666 eV Core-core repulsion = 26220.193551 eV Total energy + Delta-G solvation = -3965.518115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.91221 -40.36717 -39.55596 -36.83090 -35.53737 -35.06859 -33.62818 -32.39613 -31.99728 -29.89441 -29.54549 -28.56467 -26.26023 -25.21339 -24.55988 -24.17593 -22.22858 -21.61555 -21.00590 -20.83275 -20.03412 -18.93123 -18.01450 -17.25451 -17.07986 -17.00479 -16.77055 -16.46711 -16.13573 -15.92152 -15.71892 -15.50647 -15.19807 -15.06834 -14.70909 -14.65156 -14.17109 -14.02451 -13.81190 -13.53810 -13.24070 -13.21009 -12.96453 -12.76428 -12.69530 -12.51129 -12.38732 -12.31235 -12.21735 -12.17066 -11.87870 -11.82952 -11.72272 -11.61757 -11.59034 -11.37499 -11.32029 -11.18149 -11.14866 -10.96006 -10.72726 -10.39693 -9.86509 -8.94754 -7.92209 -5.16922 1.41032 1.44880 1.51057 1.77385 2.43936 2.56256 2.98203 3.39289 3.66988 3.76147 3.77358 3.84399 3.86798 3.93336 4.01615 4.09270 4.15063 4.16911 4.25192 4.32544 4.44512 4.51187 4.51785 4.58571 4.66266 4.66779 4.71497 4.74670 4.77306 4.78717 4.84919 4.88006 4.94496 4.98408 5.03056 5.05664 5.08310 5.14641 5.14839 5.19256 5.19740 5.27512 5.30366 5.40536 5.43912 5.50256 5.52644 5.59363 5.62213 5.71441 6.27524 6.32164 6.73478 7.39064 7.40085 8.13413 8.38042 9.30304 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.002482 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.068567 B =11276.454875 C =12828.473439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.063 4.063 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.295 1.295 7 C -0.211 4.211 8 H 0.060 0.940 9 N -0.712 5.712 10 C 0.184 3.816 11 C 0.127 3.873 12 N -0.700 5.700 13 C 0.500 3.500 14 O -0.598 6.598 15 C -0.133 4.133 16 C -0.096 4.096 17 C -0.105 4.105 18 C -0.088 4.088 19 C -0.154 4.154 20 C 0.059 3.941 21 O -0.407 6.407 22 C 0.054 3.946 23 C -0.147 4.147 24 C -0.133 4.133 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.119 4.119 28 H 0.248 0.752 29 H 0.376 0.624 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.407 0.593 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.045 0.955 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.075 0.925 53 H 0.079 0.921 54 H 0.063 0.937 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -12.798 -15.002 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.256 4.256 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.222 1.222 7 C -0.343 4.343 8 H 0.078 0.922 9 N -0.353 5.353 10 C 0.093 3.907 11 C 0.001 3.999 12 N -0.349 5.349 13 C 0.289 3.711 14 O -0.480 6.480 15 C -0.173 4.173 16 C -0.134 4.134 17 C -0.143 4.143 18 C -0.107 4.107 19 C -0.192 4.192 20 C -0.018 4.018 21 O -0.327 6.327 22 C -0.022 4.022 23 C -0.184 4.184 24 C -0.173 4.173 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.157 4.157 28 H 0.057 0.943 29 H 0.210 0.790 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.242 0.758 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.096 0.904 52 H 0.093 0.907 53 H 0.098 0.902 54 H 0.081 0.919 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.492 -12.577 -15.241 19.817 hybrid contribution -0.076 1.540 0.684 1.687 sum 1.416 -11.037 -14.557 18.323 Atomic orbital electron populations 1.69749 1.05759 1.25366 1.60146 1.25177 0.96071 0.99685 1.04658 0.85467 0.78175 0.82013 0.76529 1.20369 1.22572 1.22206 1.19228 0.90653 0.85141 1.39294 0.92246 1.42605 1.05588 1.00086 1.87002 1.20729 0.92049 0.86544 0.91383 1.21702 0.92694 0.98694 0.86837 1.45803 1.11430 1.71416 1.06257 1.21370 0.89258 0.75270 0.85251 1.90619 1.17993 1.53314 1.86060 1.21699 0.98433 1.05194 0.91976 1.21283 0.97634 1.01960 0.92515 1.21581 0.97584 1.02613 0.92509 1.21195 0.96771 0.97808 0.94880 1.22290 0.99809 0.98872 0.98229 1.22650 0.90871 1.02647 0.85607 1.87892 1.51399 1.42101 1.51283 1.22758 0.93131 0.88117 0.98220 1.22226 0.98415 1.03365 0.94431 1.22788 0.98258 0.99447 0.96818 1.22355 0.98516 0.96955 0.97238 1.22278 1.00537 0.97288 0.94854 1.22351 0.98406 0.95285 0.99633 0.94310 0.79028 0.91835 0.95453 0.75788 0.86325 0.88778 0.93303 0.92002 0.90008 0.91999 0.90750 0.92000 0.91137 0.92464 0.88594 0.92436 0.87749 0.89097 0.91688 0.91399 0.93596 0.93232 0.90449 0.90661 0.90222 0.91854 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.39 13.06 21.65 0.28 -55.10 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.95 46.29 29.55 68.60 2.03 48.32 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 7 C -0.21 -11.00 8.39 84.04 0.70 -10.29 16 8 H 0.06 3.19 7.23 -2.91 -0.02 3.17 16 9 N -0.71 -31.78 4.76 -300.07 -1.43 -33.21 16 10 C 0.18 6.44 0.68 4.32 0.00 6.44 16 11 C 0.13 4.64 3.99 86.38 0.34 4.98 16 12 N -0.70 -23.87 5.10 -463.04 -2.36 -26.23 16 13 C 0.50 17.18 7.83 87.66 0.69 17.86 16 14 O -0.60 -24.91 15.98 -3.05 -0.05 -24.95 16 15 C -0.13 -3.31 5.70 29.85 0.17 -3.14 16 16 C -0.10 -2.24 4.27 30.60 0.13 -2.11 16 17 C -0.11 -1.85 4.69 30.59 0.14 -1.71 16 18 C -0.09 -1.48 2.27 -10.68 -0.02 -1.50 16 19 C -0.15 -2.98 5.10 30.68 0.16 -2.83 16 20 C 0.06 1.07 6.84 72.01 0.49 1.56 16 21 O -0.41 -8.39 10.77 -148.98 -1.60 -10.00 16 22 C 0.05 0.80 6.84 72.01 0.49 1.29 16 23 C -0.15 -2.09 5.42 30.68 0.17 -1.93 16 24 C -0.13 -4.45 5.94 31.67 0.19 -4.26 16 25 C -0.11 -3.11 6.91 31.89 0.22 -2.89 16 26 C -0.11 -2.60 6.83 31.63 0.22 -2.39 16 27 C -0.12 -3.27 5.80 31.28 0.18 -3.09 16 28 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.38 17.99 7.28 -92.71 -0.67 17.31 16 30 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.03 1.20 7.49 -2.39 -0.02 1.18 16 32 H 0.41 13.07 7.99 -92.71 -0.74 12.33 16 33 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.05 1.35 6.62 -2.38 -0.02 1.34 16 36 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.48 6.75 -2.39 -0.02 1.46 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.07 2.04 7.85 -2.39 -0.02 2.02 16 49 H 0.05 1.82 7.12 -2.38 -0.02 1.81 16 50 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 54 H 0.06 1.84 7.44 -2.39 -0.02 1.83 16 55 H 0.08 1.89 7.55 -2.39 -0.02 1.88 16 Total: -1.00 -66.29 421.69 1.05 -65.24 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: -0.56 Total: 42.97 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.74 Total: -7.04 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -3.51 Total: -114.54 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.65 Total: -34.95 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -66.29 1.05 -65.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698797959.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.217 kcal (2) G-P(sol) polarization free energy of solvation -66.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds