Wall clock time and date at job start Tue Mar 31 2020 20:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 111.00293 * 2 1 4 4 C 1.53002 * 109.47107 * 66.03850 * 3 2 1 5 5 N 1.46490 * 109.46909 * 180.02562 * 4 3 2 6 6 C 1.46508 * 120.00334 * 270.00311 * 5 4 3 7 7 C 1.34780 * 120.00053 * 90.00693 * 5 4 3 8 8 O 1.21283 * 119.99520 * 3.77773 * 7 5 4 9 9 C 1.50700 * 120.00312 * 183.77753 * 7 5 4 10 10 C 1.56280 * 116.74278 * 69.41995 * 9 7 5 11 11 C 1.54654 * 103.25616 * 158.87047 * 10 9 7 12 12 N 1.49522 * 105.28551 * 0.72263 * 11 10 9 13 13 C 1.49525 * 105.92098 * 71.26083 * 12 11 10 14 14 C 1.54984 * 105.23991 * 288.72117 * 13 12 11 15 15 C 1.50465 * 102.03318 * 324.84952 * 12 11 10 16 16 C 1.46903 * 111.00214 * 236.04282 * 2 1 3 17 17 C 1.50697 * 109.47133 * 293.95610 * 16 2 1 18 18 O 1.21297 * 119.99790 * 359.97438 * 17 16 2 19 19 N 1.34770 * 119.99923 * 180.02562 * 17 16 2 20 20 C 1.37100 * 119.99795 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00235 * 359.97438 * 20 19 17 22 22 C 1.38959 * 120.00007 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99609 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00117 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47495 * 59.99997 * 24 22 20 26 26 H 1.48501 * 109.47277 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47083 * 300.00247 * 24 22 20 28 28 H 1.09000 * 109.46991 * 60.00188 * 1 2 3 29 29 H 1.09004 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47368 * 300.00655 * 1 2 3 31 31 H 1.09003 * 109.46363 * 306.04856 * 3 2 1 32 32 H 1.08992 * 109.47283 * 186.04700 * 3 2 1 33 33 H 1.09003 * 109.46282 * 60.00544 * 4 3 2 34 34 H 1.08998 * 109.47235 * 300.01038 * 4 3 2 35 35 H 1.08996 * 109.46857 * 264.44736 * 6 5 4 36 36 H 1.08993 * 109.46596 * 24.44880 * 6 5 4 37 37 H 1.08998 * 109.46802 * 144.44577 * 6 5 4 38 38 H 1.09002 * 110.59438 * 40.45285 * 10 9 7 39 39 H 1.08998 * 110.85016 * 277.41540 * 10 9 7 40 40 H 1.09004 * 110.28554 * 241.77271 * 11 10 9 41 41 H 1.09002 * 110.36136 * 119.71427 * 11 10 9 42 42 H 1.08992 * 110.28051 * 47.69306 * 13 12 11 43 43 H 1.09000 * 110.27867 * 169.78807 * 13 12 11 44 44 H 1.09006 * 110.67171 * 240.92837 * 14 13 12 45 45 H 1.08996 * 110.69463 * 117.77517 * 14 13 12 46 46 H 1.09009 * 111.90756 * 171.59379 * 15 12 11 47 47 H 1.09000 * 111.91244 * 297.73503 * 15 12 11 48 48 H 1.08996 * 109.46629 * 53.95486 * 16 2 1 49 49 H 1.09002 * 109.47092 * 173.95364 * 16 2 1 50 50 H 0.97000 * 120.00298 * 359.97438 * 19 17 16 51 51 H 0.97001 * 119.99737 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0576 1.3182 5 7 2.1559 3.4253 1.3179 6 6 3.5009 3.6943 1.8328 7 6 1.4011 4.4364 0.8440 8 8 0.2632 4.2253 0.4816 9 6 1.9712 5.8292 0.7645 10 6 3.0921 6.0707 -0.2973 11 6 3.0572 7.6025 -0.5077 12 7 1.9900 8.1025 0.4124 13 6 2.5426 7.9644 1.7949 14 6 2.5609 6.4403 2.0759 15 6 0.9843 6.9845 0.3634 16 6 1.9955 -0.7660 -1.1375 17 6 1.6369 -2.2204 -0.9728 18 8 1.0053 -2.5832 -0.0028 19 7 2.0189 -3.1181 -1.9026 20 6 1.6932 -4.4414 -1.7524 21 1 1.1308 -4.7645 -0.8888 22 6 2.0866 -5.3669 -2.7113 23 7 2.7713 -4.9739 -3.7619 24 14 1.6421 -7.1697 -2.5071 25 1 0.1649 -7.3127 -2.4553 26 1 2.1749 -7.9442 -3.6567 27 1 2.2338 -7.6857 -1.2464 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3444 -0.1082 33 1 2.0657 1.5016 2.1491 34 1 0.5471 2.0845 1.4264 35 1 3.4352 4.0065 2.8750 36 1 4.1046 2.7896 1.7618 37 1 3.9633 4.4868 1.2445 38 1 2.8594 5.5494 -1.2258 39 1 4.0633 5.7570 0.0855 40 1 2.8042 7.8362 -1.5419 41 1 4.0190 8.0434 -0.2457 42 1 3.5534 8.3697 1.8400 43 1 1.8983 8.4732 2.5119 44 1 1.9292 6.1991 2.9309 45 1 3.5804 6.0909 2.2388 46 1 0.1923 7.1171 1.1006 47 1 0.5802 6.8445 -0.6393 48 1 1.5611 -0.3873 -2.0627 49 1 3.0797 -0.6611 -1.1756 50 1 2.5243 -2.8281 -2.6780 51 1 3.0455 -5.6199 -4.4315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699001959.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:01 Heat of formation + Delta-G solvation = -49.816775 kcal Electronic energy + Delta-G solvation = -29974.565240 eV Core-core repulsion = 25909.046994 eV Total energy + Delta-G solvation = -4065.518246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.31929 -40.52733 -40.07500 -38.11668 -36.58019 -35.83275 -33.29165 -32.43744 -31.63570 -30.55457 -29.20529 -29.13220 -27.74286 -26.99620 -25.69340 -23.47267 -23.23156 -22.01041 -21.46743 -21.01101 -19.91858 -19.78832 -17.92675 -17.67151 -17.58930 -17.13522 -16.74183 -16.61831 -16.44599 -16.12593 -16.05379 -15.68439 -15.55032 -15.01857 -14.74460 -14.35452 -14.14634 -14.09067 -13.82021 -13.76976 -13.67341 -13.45327 -13.35202 -13.06813 -13.01602 -12.93580 -12.72221 -12.62385 -12.56185 -12.42297 -12.41567 -12.27140 -12.12558 -11.89116 -11.52977 -11.45740 -11.25659 -10.91932 -10.34664 -10.02683 -10.00611 -9.76547 -9.32046 -8.46287 -5.94915 1.39775 1.41132 1.41961 1.52532 1.81124 2.04590 2.29134 2.75917 2.82354 3.20096 3.34992 3.40628 3.44163 3.61625 3.85219 3.91702 4.04413 4.05586 4.10803 4.20059 4.26379 4.30902 4.33397 4.42991 4.47350 4.49460 4.50336 4.55743 4.56492 4.60903 4.64950 4.75427 4.77926 4.80180 4.84406 4.87888 4.94319 5.00134 5.08383 5.13630 5.14230 5.40113 5.41581 5.48551 5.69541 5.81293 6.00704 6.10989 6.30251 6.60544 7.05252 7.12881 7.56008 8.11852 8.70896 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.030314 B = 0.001871 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.433110 B =14959.918776 C =15191.670580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.527 5.527 3 C 0.052 3.948 4 C 0.123 3.877 5 N -0.605 5.605 6 C 0.063 3.937 7 C 0.544 3.456 8 O -0.581 6.581 9 C -0.131 4.131 10 C -0.129 4.129 11 C 0.015 3.985 12 N -0.479 5.479 13 C 0.013 3.987 14 C -0.129 4.129 15 C 0.036 3.964 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.022 0.978 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.115 0.885 50 H 0.396 0.604 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.769 27.733 9.144 30.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.252 5.252 3 C -0.077 4.077 4 C -0.001 4.001 5 N -0.337 5.337 6 C -0.079 4.079 7 C 0.333 3.667 8 O -0.460 6.460 9 C -0.136 4.136 10 C -0.167 4.167 11 C -0.114 4.114 12 N -0.199 5.199 13 C -0.116 4.116 14 C -0.168 4.168 15 C -0.093 4.093 16 C -0.073 4.073 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.133 0.867 50 H 0.230 0.770 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.788 27.782 9.714 30.204 hybrid contribution -0.351 -1.563 -1.172 1.985 sum 6.436 26.220 8.542 28.317 Atomic orbital electron populations 1.22408 0.87215 1.02145 1.00102 1.61497 1.08503 1.12844 1.42337 1.22432 1.01027 0.86966 0.97293 1.21330 0.99940 0.81044 0.97765 1.47831 1.17826 1.06389 1.61605 1.22410 0.81100 1.04097 1.00254 1.20037 0.84695 0.86127 0.75862 1.90708 1.20232 1.84935 1.50156 1.23633 0.98318 0.91302 1.00359 1.23274 0.97824 0.98100 0.97531 1.23669 0.96799 0.92197 0.98741 1.69968 1.08061 1.36228 1.05640 1.23761 1.02199 0.94533 0.91076 1.23431 1.02692 0.96140 0.94540 1.24253 0.95544 0.87651 1.01896 1.21745 1.02264 0.90339 0.92924 1.20681 0.83817 0.88590 0.83989 1.90464 1.45090 1.81374 1.32954 1.41921 1.50031 1.07054 1.22112 1.19626 1.34462 0.83969 1.08120 0.90247 1.26052 0.96278 1.04375 0.94682 1.69671 1.38067 1.37256 1.11167 0.84982 0.78556 0.76713 0.78042 1.19839 1.19505 1.19605 0.96358 0.92038 0.90681 0.95982 0.88747 0.88145 0.91768 0.90596 0.89422 0.89045 0.92021 0.87726 0.90064 0.87892 0.88028 0.89723 0.91214 0.87520 0.90148 0.90650 0.92150 0.86681 0.77047 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 8.96 127.69 1.14 2.19 16 2 N -0.53 -17.71 4.50 -927.04 -4.17 -21.88 16 3 C 0.05 1.32 5.28 86.30 0.46 1.77 16 4 C 0.12 2.81 5.34 86.38 0.46 3.27 16 5 N -0.60 -10.91 2.87 -846.76 -2.43 -13.34 16 6 C 0.06 0.55 8.88 127.77 1.13 1.69 16 7 C 0.54 12.05 7.22 87.66 0.63 12.68 16 8 O -0.58 -18.55 16.13 -3.04 -0.05 -18.60 16 9 C -0.13 -1.93 0.92 -49.20 -0.05 -1.98 16 10 C -0.13 -1.35 5.49 32.30 0.18 -1.18 16 11 C 0.01 0.14 6.61 86.36 0.57 0.72 16 12 N -0.48 -6.54 6.94 -855.77 -5.94 -12.48 16 13 C 0.01 0.11 6.63 86.47 0.57 0.69 16 14 C -0.13 -1.13 4.86 32.40 0.16 -0.97 16 15 C 0.04 0.63 6.07 87.06 0.53 1.16 16 16 C 0.06 2.09 5.45 85.56 0.47 2.55 16 17 C 0.44 21.33 7.47 87.66 0.66 21.99 16 18 O -0.61 -34.07 13.91 -3.08 -0.04 -34.12 16 19 N -0.57 -29.74 5.29 -306.98 -1.62 -31.36 16 20 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.92 -49.91 13.05 21.67 0.28 -49.62 16 24 Si 0.99 43.18 29.55 68.60 2.03 45.20 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 2.64 5.82 -2.38 -0.01 2.62 16 30 H 0.07 2.42 6.47 -2.39 -0.02 2.41 16 31 H 0.02 0.62 8.12 -2.39 -0.02 0.60 16 32 H 0.09 2.00 7.93 -2.39 -0.02 1.98 16 33 H 0.10 2.08 8.07 -2.39 -0.02 2.06 16 34 H 0.06 1.80 5.78 -2.39 -0.01 1.79 16 35 H 0.08 0.47 7.68 -2.39 -0.02 0.45 16 36 H 0.09 0.67 8.03 -2.39 -0.02 0.65 16 37 H 0.09 0.49 3.81 -2.39 -0.01 0.48 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.58 6.03 -2.39 -0.01 0.56 16 40 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.10 0.59 7.69 -2.39 -0.02 0.57 16 42 H 0.10 0.49 7.69 -2.39 -0.02 0.47 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.11 0.40 5.92 -2.39 -0.01 0.38 16 46 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 49 H 0.12 3.48 7.93 -2.39 -0.02 3.46 16 50 H 0.40 19.48 7.90 -92.71 -0.73 18.74 16 51 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -74.71 393.39 -3.55 -78.26 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.21 Total: 31.83 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 8.19 Total: 26.12 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -13.88 Total: -128.69 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.09 Total: -52.72 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.71 -3.55 -78.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699001959.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.440 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds