Wall clock time and date at job start Tue Mar 31 2020 21:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99802 * 2 1 4 4 O 1.21586 * 120.00284 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99741 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00095 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47537 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99577 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00264 * 179.97438 * 7 6 5 10 10 C 1.46924 * 120.63208 * 179.97438 * 9 7 6 11 11 C 1.53189 * 108.77885 * 233.63428 * 10 9 7 12 12 C 1.53044 * 109.31097 * 305.36388 * 11 10 9 13 13 C 1.53002 * 109.46157 * 181.38632 * 12 11 10 14 14 H 1.09000 * 110.88252 * 302.39927 * 13 12 11 15 15 C 1.55155 * 111.03683 * 66.30417 * 13 12 11 16 16 C 1.54337 * 103.02124 * 153.39881 * 15 13 12 17 17 N 1.47022 * 107.26372 * 338.14006 * 16 15 13 18 18 C 1.36932 * 125.64698 * 178.85099 * 17 16 15 19 19 H 1.08006 * 119.99571 * 169.55355 * 18 17 16 20 20 C 1.38810 * 120.00088 * 349.55176 * 18 17 16 21 21 N 1.31621 * 119.99846 * 152.80113 * 20 18 17 22 22 Si 1.86800 * 120.00051 * 332.80327 * 20 18 17 23 23 H 1.48499 * 109.47129 * 85.29201 * 22 20 18 24 24 H 1.48503 * 109.47091 * 205.29245 * 22 20 18 25 25 H 1.48498 * 109.46868 * 325.29354 * 22 20 18 26 26 C 1.47432 * 108.70275 * 358.58536 * 17 16 15 27 27 C 1.53042 * 109.52764 * 61.37021 * 12 11 10 28 28 C 1.46924 * 120.63222 * 0.02824 * 9 7 6 29 29 H 1.08999 * 109.47801 * 300.00692 * 1 2 3 30 30 H 1.09005 * 109.46913 * 60.00601 * 1 2 3 31 31 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 32 32 H 0.96995 * 119.99822 * 179.97438 * 2 1 3 33 33 H 0.97001 * 120.00331 * 359.97438 * 5 3 2 34 34 H 1.09000 * 109.47196 * 59.99506 * 6 5 3 35 35 H 1.09003 * 109.46939 * 299.99636 * 6 5 3 36 36 H 1.09003 * 109.58624 * 113.84199 * 10 9 7 37 37 H 1.08998 * 109.58864 * 353.42154 * 10 9 7 38 38 H 1.09003 * 109.49914 * 185.41534 * 11 10 9 39 39 H 1.09002 * 109.52215 * 65.33064 * 11 10 9 40 40 H 1.09000 * 109.46104 * 301.35717 * 12 11 10 41 41 H 1.09008 * 110.71923 * 271.95609 * 15 13 12 42 42 H 1.09002 * 110.72269 * 35.22504 * 15 13 12 43 43 H 1.08997 * 109.99116 * 218.66767 * 16 15 13 44 44 H 1.09002 * 109.77782 * 97.49100 * 16 15 13 45 45 H 0.97001 * 119.99981 * 5.05460 * 21 20 18 46 46 H 1.08995 * 110.36373 * 143.19582 * 26 17 16 47 47 H 1.08999 * 110.36650 * 265.40827 * 26 17 16 48 48 H 1.09004 * 109.49302 * 58.57683 * 27 12 11 49 49 H 1.08994 * 109.49618 * 178.67334 * 27 12 11 50 50 H 1.09005 * 109.58548 * 246.15958 * 28 9 7 51 51 H 1.09000 * 109.58379 * 6.43295 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.2191 2.4359 -0.0011 7 6 5.7008 2.1606 -0.0010 8 8 6.1050 1.0171 -0.0009 9 7 6.5765 3.1850 -0.0019 10 6 8.0239 2.9324 -0.0013 11 6 8.6572 3.6962 1.1659 12 6 8.2774 5.1756 1.0682 13 6 8.9364 5.9478 2.2129 14 1 8.6416 5.5375 3.1787 15 6 10.4805 5.9585 2.0610 16 6 10.8931 7.2519 2.7951 17 7 9.7136 8.1288 2.8304 18 6 9.6560 9.3658 3.4148 19 1 8.8015 10.0041 3.2448 20 6 10.6959 9.7994 4.2257 21 7 10.9384 11.0868 4.3528 22 14 11.7510 8.5558 5.1365 23 1 12.8407 8.0838 4.2449 24 1 12.3390 9.1938 6.3417 25 1 10.9122 7.4012 5.5469 26 6 8.6049 7.4585 2.1268 27 6 6.7569 5.3207 1.1642 28 6 6.1021 4.5755 -0.0025 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.9499 -0.8400 0.0004 33 1 3.9716 0.3272 -0.0005 34 1 3.9561 3.0077 0.8888 35 1 3.9555 3.0073 -0.8912 36 1 8.4555 3.2775 -0.9409 37 1 8.2085 1.8648 0.1177 38 1 9.7417 3.5954 1.1210 39 1 8.2926 3.2885 2.1087 40 1 8.6209 5.5765 0.1146 41 1 10.9211 5.0836 2.5392 42 1 10.7644 6.0087 1.0098 43 1 11.7042 7.7430 2.2575 44 1 11.2091 7.0146 3.8110 45 1 10.3467 11.7349 3.9395 46 1 7.6581 7.6680 2.6243 47 1 8.5656 7.7812 1.0864 48 1 6.4099 4.8973 2.1068 49 1 6.4886 6.3761 1.1183 50 1 6.3766 5.0548 -0.9423 51 1 5.0184 4.5918 0.1130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699677621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:20 Heat of formation + Delta-G solvation = -37.970599 kcal Electronic energy + Delta-G solvation = -29731.488141 eV Core-core repulsion = 25666.483583 eV Total energy + Delta-G solvation = -4065.004558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.89560 -40.03830 -38.72375 -37.00164 -35.13342 -34.71701 -33.97196 -32.15129 -31.56400 -29.77069 -28.79058 -28.21502 -26.33063 -24.99730 -23.74960 -22.98505 -21.45346 -21.17517 -20.44317 -19.70255 -19.66295 -18.99316 -17.38362 -17.14710 -17.04759 -16.45074 -15.90042 -15.63346 -15.33893 -14.95994 -14.70568 -14.66951 -14.38617 -14.17212 -14.10584 -13.54658 -13.37323 -13.19683 -13.15381 -12.95903 -12.70003 -12.66745 -12.64096 -12.35199 -11.88705 -11.52168 -11.28932 -11.21057 -11.02314 -10.89908 -10.68408 -10.60394 -10.42852 -10.22506 -10.02362 -9.99060 -9.76481 -9.53810 -9.31508 -9.12693 -8.96587 -8.39182 -7.07035 -6.31186 -3.15267 2.10415 2.15637 2.72950 2.81660 3.43275 3.52411 3.70761 3.87041 3.98343 4.48897 4.61366 4.61546 4.65854 4.76378 4.84750 4.91424 4.94330 5.01987 5.05915 5.12587 5.15188 5.25276 5.36934 5.37971 5.41676 5.49820 5.53037 5.56353 5.66193 5.77180 5.80856 5.92257 5.94219 5.97756 5.99556 6.02277 6.21404 6.22763 6.27686 6.34755 6.46115 6.52990 6.61239 6.80349 6.85631 6.97405 7.56369 7.68933 7.74965 8.18142 8.36499 9.06473 9.63193 10.30314 11.17047 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.002013 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.841532 B =13905.346657 C =14544.236713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.750 5.750 3 C 0.705 3.295 4 O -0.590 6.590 5 N -0.735 5.735 6 C 0.120 3.880 7 C 0.512 3.488 8 O -0.545 6.545 9 N -0.603 5.603 10 C 0.112 3.888 11 C -0.129 4.129 12 C -0.074 4.074 13 C -0.100 4.100 14 H 0.075 0.925 15 C -0.123 4.123 16 C 0.116 3.884 17 N -0.611 5.611 18 C -0.330 4.330 19 H 0.075 0.925 20 C -0.021 4.021 21 N -0.919 5.919 22 Si 1.071 2.929 23 H -0.294 1.294 24 H -0.301 1.301 25 H -0.294 1.294 26 C 0.142 3.858 27 C -0.132 4.132 28 C 0.102 3.898 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.399 0.601 33 H 0.407 0.593 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.025 0.975 45 H 0.262 0.738 46 H 0.041 0.959 47 H 0.023 0.977 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.076 0.924 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.862 -24.494 -11.865 31.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.405 5.405 3 C 0.405 3.595 4 O -0.468 6.468 5 N -0.394 5.394 6 C -0.008 4.008 7 C 0.299 3.701 8 O -0.423 6.423 9 N -0.336 5.336 10 C -0.010 4.010 11 C -0.167 4.167 12 C -0.093 4.093 13 C -0.119 4.119 14 H 0.093 0.907 15 C -0.161 4.161 16 C -0.009 4.009 17 N -0.338 5.338 18 C -0.458 4.458 19 H 0.093 0.907 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.905 3.095 23 H -0.222 1.222 24 H -0.229 1.229 25 H -0.223 1.223 26 C 0.016 3.984 27 C -0.170 4.170 28 C -0.021 4.021 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.232 0.768 33 H 0.245 0.755 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.041 0.959 48 H 0.087 0.913 49 H 0.103 0.897 50 H 0.094 0.906 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.915 -24.138 -10.838 29.895 hybrid contribution -0.873 -0.511 -0.879 1.340 sum -14.789 -24.649 -11.716 31.041 Atomic orbital electron populations 1.21416 0.77847 1.02081 1.02422 1.44874 1.07869 1.07106 1.80687 1.15835 0.81327 0.84463 0.77891 1.90952 1.67875 1.30221 1.57749 1.44744 1.04705 1.09607 1.80384 1.20935 0.88180 0.86803 1.04863 1.20458 0.88401 0.85072 0.76125 1.90674 1.79739 1.21049 1.50851 1.48072 1.06882 1.06364 1.72255 1.21691 0.78478 1.01859 0.98964 1.21988 1.01099 0.95285 0.98314 1.21100 0.94379 0.94447 0.99368 1.22432 0.95109 0.96704 0.97693 0.90688 1.22604 0.95438 0.97680 1.00349 1.21641 0.91654 0.90307 0.97306 1.44793 1.06062 1.17736 1.65212 1.20006 1.08880 0.89772 1.27100 0.90707 1.25786 0.98458 0.99638 0.98294 1.70927 1.35016 1.00507 1.49489 0.83667 0.75355 0.74031 0.76409 1.22227 1.22883 1.22271 1.21627 0.92058 0.89117 0.95608 1.21998 0.95707 1.01253 0.98031 1.21935 0.99568 0.80555 1.00025 0.92244 0.92273 0.90569 0.76775 0.75547 0.88262 0.88378 0.91188 0.89024 0.90229 0.91480 0.90741 0.91743 0.91535 0.94481 0.95725 0.92755 0.94075 0.95906 0.91270 0.89679 0.90555 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.56 10.70 59.85 0.64 1.21 16 2 N -0.75 -4.88 5.72 -72.07 -0.41 -5.30 16 3 C 0.71 7.06 8.57 -86.92 -0.74 6.32 16 4 O -0.59 -8.19 16.34 5.29 0.09 -8.10 16 5 N -0.74 -6.35 5.53 -66.41 -0.37 -6.72 16 6 C 0.12 1.02 4.50 -5.19 -0.02 1.00 16 7 C 0.51 5.01 7.77 -10.99 -0.09 4.92 16 8 O -0.54 -6.72 15.08 5.56 0.08 -6.64 16 9 N -0.60 -5.35 2.97 -172.80 -0.51 -5.86 16 10 C 0.11 1.00 6.43 -3.71 -0.02 0.98 16 11 C -0.13 -1.23 5.23 -26.61 -0.14 -1.37 16 12 C -0.07 -0.80 1.66 -90.57 -0.15 -0.95 16 13 C -0.10 -1.49 2.56 -88.47 -0.23 -1.71 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.12 -1.95 5.57 -24.89 -0.14 -2.09 16 16 C 0.12 2.53 5.00 -3.06 -0.02 2.51 16 17 N -0.61 -14.96 3.28 -170.07 -0.56 -15.52 16 18 C -0.33 -9.53 10.42 -15.06 -0.16 -9.69 16 19 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 20 C -0.02 -0.63 5.43 -17.43 -0.09 -0.72 16 21 N -0.92 -28.97 13.70 55.49 0.76 -28.20 16 22 Si 1.07 27.29 24.69 -169.99 -4.20 23.09 16 23 H -0.29 -7.07 6.80 56.52 0.38 -6.69 16 24 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 25 H -0.29 -7.19 6.75 56.52 0.38 -6.81 16 26 C 0.14 2.70 5.65 -2.53 -0.01 2.69 16 27 C -0.13 -1.25 5.18 -26.64 -0.14 -1.39 16 28 C 0.10 0.77 6.34 -3.74 -0.02 0.74 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.40 1.47 8.84 -40.82 -0.36 1.11 16 33 H 0.41 3.14 7.45 -40.82 -0.30 2.83 16 34 H 0.10 0.83 7.70 -51.93 -0.40 0.43 16 35 H 0.10 0.76 7.94 -51.93 -0.41 0.35 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.90 7.01 -51.93 -0.36 0.54 16 38 H 0.08 0.73 7.45 -51.93 -0.39 0.34 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 41 H 0.06 0.90 8.11 -51.92 -0.42 0.47 16 42 H 0.07 0.95 8.02 -51.93 -0.42 0.54 16 43 H 0.04 0.85 7.97 -51.93 -0.41 0.44 16 44 H 0.03 0.58 3.59 -51.93 -0.19 0.39 16 45 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 46 H 0.04 0.79 8.01 -51.93 -0.42 0.37 16 47 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.84 7.21 -51.93 -0.37 0.47 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.09 0.54 5.93 -51.93 -0.31 0.23 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -36.84 392.29 -9.14 -45.98 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.60 Total: -1.10 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.33 Total: 2.45 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -1.09 Total: -61.60 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.17 Total: -14.74 kcal Atomic # 14 Polarization: 27.29 SS G_CDS: -4.20 Total: 23.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.84 -9.14 -45.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699677621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.008 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds