Wall clock time and date at job start Tue Mar 31 2020 21:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99802 * 2 1 4 4 O 1.21586 * 120.00284 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99741 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00095 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47537 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99577 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00264 * 179.97438 * 7 6 5 10 10 C 1.46924 * 120.63208 * 179.97438 * 9 7 6 11 11 C 1.53189 * 108.77885 * 233.63428 * 10 9 7 12 12 C 1.53044 * 109.31097 * 305.36388 * 11 10 9 13 13 C 1.53002 * 109.46157 * 181.38632 * 12 11 10 14 14 H 1.09000 * 110.88252 * 302.39927 * 13 12 11 15 15 C 1.55155 * 111.03683 * 66.30417 * 13 12 11 16 16 C 1.54337 * 103.02124 * 153.39881 * 15 13 12 17 17 N 1.47022 * 107.26372 * 338.14006 * 16 15 13 18 18 C 1.36932 * 125.64698 * 178.85099 * 17 16 15 19 19 H 1.08006 * 119.99571 * 169.55355 * 18 17 16 20 20 C 1.38810 * 120.00088 * 349.55176 * 18 17 16 21 21 N 1.31621 * 119.99846 * 152.80113 * 20 18 17 22 22 Si 1.86800 * 120.00051 * 332.80327 * 20 18 17 23 23 H 1.48499 * 109.47129 * 85.29201 * 22 20 18 24 24 H 1.48503 * 109.47091 * 205.29245 * 22 20 18 25 25 H 1.48498 * 109.46868 * 325.29354 * 22 20 18 26 26 C 1.47432 * 108.70275 * 358.58536 * 17 16 15 27 27 C 1.53042 * 109.52764 * 61.37021 * 12 11 10 28 28 C 1.46924 * 120.63222 * 0.02824 * 9 7 6 29 29 H 1.08999 * 109.47801 * 300.00692 * 1 2 3 30 30 H 1.09005 * 109.46913 * 60.00601 * 1 2 3 31 31 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 32 32 H 0.96995 * 119.99822 * 179.97438 * 2 1 3 33 33 H 0.97001 * 120.00331 * 359.97438 * 5 3 2 34 34 H 1.09000 * 109.47196 * 59.99506 * 6 5 3 35 35 H 1.09003 * 109.46939 * 299.99636 * 6 5 3 36 36 H 1.09003 * 109.58624 * 113.84199 * 10 9 7 37 37 H 1.08998 * 109.58864 * 353.42154 * 10 9 7 38 38 H 1.09003 * 109.49914 * 185.41534 * 11 10 9 39 39 H 1.09002 * 109.52215 * 65.33064 * 11 10 9 40 40 H 1.09000 * 109.46104 * 301.35717 * 12 11 10 41 41 H 1.09008 * 110.71923 * 271.95609 * 15 13 12 42 42 H 1.09002 * 110.72269 * 35.22504 * 15 13 12 43 43 H 1.08997 * 109.99116 * 218.66767 * 16 15 13 44 44 H 1.09002 * 109.77782 * 97.49100 * 16 15 13 45 45 H 0.97001 * 119.99981 * 5.05460 * 21 20 18 46 46 H 1.08995 * 110.36373 * 143.19582 * 26 17 16 47 47 H 1.08999 * 110.36650 * 265.40827 * 26 17 16 48 48 H 1.09004 * 109.49302 * 58.57683 * 27 12 11 49 49 H 1.08994 * 109.49618 * 178.67334 * 27 12 11 50 50 H 1.09005 * 109.58548 * 246.15958 * 28 9 7 51 51 H 1.09000 * 109.58379 * 6.43295 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.2191 2.4359 -0.0011 7 6 5.7008 2.1606 -0.0010 8 8 6.1050 1.0171 -0.0009 9 7 6.5765 3.1850 -0.0019 10 6 8.0239 2.9324 -0.0013 11 6 8.6572 3.6962 1.1659 12 6 8.2774 5.1756 1.0682 13 6 8.9364 5.9478 2.2129 14 1 8.6416 5.5375 3.1787 15 6 10.4805 5.9585 2.0610 16 6 10.8931 7.2519 2.7951 17 7 9.7136 8.1288 2.8304 18 6 9.6560 9.3658 3.4148 19 1 8.8015 10.0041 3.2448 20 6 10.6959 9.7994 4.2257 21 7 10.9384 11.0868 4.3528 22 14 11.7510 8.5558 5.1365 23 1 12.8407 8.0838 4.2449 24 1 12.3390 9.1938 6.3417 25 1 10.9122 7.4012 5.5469 26 6 8.6049 7.4585 2.1268 27 6 6.7569 5.3207 1.1642 28 6 6.1021 4.5755 -0.0025 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.9499 -0.8400 0.0004 33 1 3.9716 0.3272 -0.0005 34 1 3.9561 3.0077 0.8888 35 1 3.9555 3.0073 -0.8912 36 1 8.4555 3.2775 -0.9409 37 1 8.2085 1.8648 0.1177 38 1 9.7417 3.5954 1.1210 39 1 8.2926 3.2885 2.1087 40 1 8.6209 5.5765 0.1146 41 1 10.9211 5.0836 2.5392 42 1 10.7644 6.0087 1.0098 43 1 11.7042 7.7430 2.2575 44 1 11.2091 7.0146 3.8110 45 1 10.3467 11.7349 3.9395 46 1 7.6581 7.6680 2.6243 47 1 8.5656 7.7812 1.0864 48 1 6.4099 4.8973 2.1068 49 1 6.4886 6.3761 1.1183 50 1 6.3766 5.0548 -0.9423 51 1 5.0184 4.5918 0.1130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699677621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:19 Heat of formation + Delta-G solvation = -66.545000 kcal Electronic energy + Delta-G solvation = -29732.727220 eV Core-core repulsion = 25666.483583 eV Total energy + Delta-G solvation = -4066.243637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.64315 -40.81143 -39.89012 -38.14668 -35.73535 -35.49943 -35.34948 -33.89896 -32.30066 -31.30421 -29.83520 -29.32587 -27.07728 -26.20701 -24.90273 -24.08145 -22.37969 -22.14999 -21.87948 -20.94627 -20.37880 -19.68668 -19.46442 -17.91977 -17.71439 -17.25066 -17.07154 -16.60965 -16.37164 -16.24659 -15.85028 -15.41550 -15.30166 -15.23773 -14.90638 -14.85858 -14.62984 -14.27797 -14.08845 -14.03068 -13.87782 -13.48432 -13.33958 -13.18034 -13.02276 -12.95339 -12.90451 -12.53315 -12.26241 -12.13983 -11.79413 -11.72641 -11.54635 -11.52220 -11.30906 -11.14188 -11.05167 -10.85855 -10.55873 -10.50966 -9.89275 -9.69610 -9.14885 -8.64067 -5.40842 1.37682 1.41093 1.47515 1.49683 1.69664 2.06761 2.08385 2.50586 3.02993 3.29385 3.32334 3.40902 3.62822 3.79800 3.83292 4.00448 4.13983 4.24961 4.26108 4.29062 4.30084 4.44452 4.45553 4.47578 4.50274 4.57700 4.67663 4.73110 4.82063 4.85409 4.91226 4.93441 4.97242 4.98901 5.06176 5.06918 5.16986 5.23111 5.25541 5.30807 5.38359 5.46540 5.54393 5.58444 5.63560 5.90514 6.12297 6.26953 6.84448 6.93209 7.01199 7.49220 7.52099 8.16307 8.84289 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.002013 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.841532 B =13905.346657 C =14544.236713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.738 5.738 3 C 0.699 3.301 4 O -0.633 6.633 5 N -0.730 5.730 6 C 0.121 3.879 7 C 0.514 3.486 8 O -0.572 6.572 9 N -0.601 5.601 10 C 0.114 3.886 11 C -0.121 4.121 12 C -0.065 4.065 13 C -0.083 4.083 14 H 0.069 0.931 15 C -0.111 4.111 16 C 0.102 3.898 17 N -0.635 5.635 18 C -0.320 4.320 19 H 0.043 0.957 20 C -0.080 4.080 21 N -0.954 5.954 22 Si 1.114 2.886 23 H -0.272 1.272 24 H -0.307 1.307 25 H -0.278 1.278 26 C 0.136 3.864 27 C -0.131 4.131 28 C 0.105 3.895 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.414 0.586 33 H 0.413 0.587 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.021 0.979 44 H 0.018 0.982 45 H 0.248 0.752 46 H 0.033 0.967 47 H 0.031 0.969 48 H 0.062 0.938 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.891 -27.874 -13.116 34.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.394 5.394 3 C 0.398 3.602 4 O -0.515 6.515 5 N -0.389 5.389 6 C -0.006 4.006 7 C 0.302 3.698 8 O -0.453 6.453 9 N -0.333 5.333 10 C -0.008 4.008 11 C -0.159 4.159 12 C -0.084 4.084 13 C -0.103 4.103 14 H 0.087 0.913 15 C -0.149 4.149 16 C -0.022 4.022 17 N -0.362 5.362 18 C -0.449 4.449 19 H 0.061 0.939 20 C -0.274 4.274 21 N -0.598 5.598 22 Si 0.943 3.057 23 H -0.198 1.198 24 H -0.236 1.236 25 H -0.205 1.205 26 C 0.012 3.988 27 C -0.169 4.169 28 C -0.017 4.017 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.250 0.750 33 H 0.251 0.749 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.110 0.890 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.956 -27.586 -12.126 33.209 hybrid contribution -0.969 0.577 -0.546 1.253 sum -14.925 -27.009 -12.673 33.359 Atomic orbital electron populations 1.21560 0.77019 1.04167 1.01351 1.44857 1.08435 1.06808 1.79320 1.16073 0.81577 0.84752 0.77752 1.90918 1.68719 1.31960 1.59873 1.44697 1.04362 1.09965 1.79897 1.20961 0.87371 0.86927 1.05386 1.20589 0.88813 0.84765 0.75584 1.90663 1.80208 1.22135 1.52277 1.48133 1.06918 1.06664 1.71563 1.21692 0.78423 1.01327 0.99373 1.21908 1.01813 0.93963 0.98201 1.21025 0.94774 0.94748 0.97829 1.22305 0.94940 0.93783 0.99253 0.91276 1.22619 0.95733 0.95379 1.01131 1.21856 0.90423 0.92407 0.97520 1.44950 1.09039 1.17175 1.65026 1.19931 1.07340 0.91478 1.26172 0.93866 1.27022 1.00639 1.00372 0.99372 1.71037 1.35936 1.01352 1.51453 0.83105 0.74926 0.72412 0.75289 1.19823 1.23565 1.20530 1.21827 0.90204 0.91866 0.94948 1.21963 0.95040 1.01224 0.98698 1.22000 1.00338 0.79571 0.99799 0.93439 0.93254 0.86910 0.74988 0.74927 0.88055 0.87484 0.89634 0.89846 0.89125 0.92332 0.89764 0.88837 0.89390 0.96079 0.96471 0.94285 0.94888 0.95097 0.91917 0.90234 0.88981 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 10.70 127.77 1.37 2.31 16 2 N -0.74 -8.49 5.72 -500.19 -2.86 -11.35 16 3 C 0.70 13.29 8.57 179.05 1.53 14.83 16 4 O -0.63 -17.33 16.34 -3.99 -0.07 -17.40 16 5 N -0.73 -11.62 5.53 -482.30 -2.67 -14.28 16 6 C 0.12 1.86 4.50 85.63 0.39 2.24 16 7 C 0.51 8.98 7.77 87.66 0.68 9.66 16 8 O -0.57 -13.12 15.08 -3.03 -0.05 -13.17 16 9 N -0.60 -8.96 2.97 -819.02 -2.43 -11.40 16 10 C 0.11 1.66 6.43 86.36 0.56 2.22 16 11 C -0.12 -1.87 5.23 30.67 0.16 -1.71 16 12 C -0.06 -1.18 1.66 -10.76 -0.02 -1.20 16 13 C -0.08 -2.25 2.56 -9.40 -0.02 -2.27 16 14 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 15 C -0.11 -3.11 5.57 31.79 0.18 -2.93 16 16 C 0.10 4.27 5.00 86.73 0.43 4.71 16 17 N -0.63 -30.86 3.28 -691.96 -2.27 -33.13 16 18 C -0.32 -18.95 10.42 84.03 0.88 -18.08 16 19 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 20 C -0.08 -4.86 5.43 84.86 0.46 -4.40 16 21 N -0.95 -62.23 13.70 21.65 0.30 -61.94 16 22 Si 1.11 55.36 24.69 68.60 1.69 57.05 16 23 H -0.27 -12.38 6.80 99.48 0.68 -11.71 16 24 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 25 H -0.28 -12.91 6.75 99.48 0.67 -12.24 16 26 C 0.14 5.03 5.65 86.85 0.49 5.52 16 27 C -0.13 -2.15 5.18 30.66 0.16 -1.99 16 28 C 0.10 1.27 6.34 86.35 0.55 1.82 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.11 0.18 8.14 -2.39 -0.02 0.17 16 32 H 0.41 2.19 8.84 -92.71 -0.82 1.37 16 33 H 0.41 5.73 7.45 -92.71 -0.69 5.04 16 34 H 0.10 1.53 7.70 -2.39 -0.02 1.51 16 35 H 0.11 1.46 7.94 -2.39 -0.02 1.44 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.42 7.01 -2.39 -0.02 1.41 16 38 H 0.09 1.24 7.45 -2.39 -0.02 1.23 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.44 8.11 -2.39 -0.02 1.42 16 41 H 0.09 2.14 8.11 -2.38 -0.02 2.12 16 42 H 0.09 2.12 8.02 -2.39 -0.02 2.10 16 43 H 0.02 0.94 7.97 -2.39 -0.02 0.92 16 44 H 0.02 0.77 3.59 -2.39 -0.01 0.76 16 45 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 46 H 0.03 1.26 8.01 -2.39 -0.02 1.24 16 47 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 48 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 49 H 0.08 1.42 7.21 -2.39 -0.02 1.40 16 50 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 51 H 0.10 0.97 5.93 -2.39 -0.01 0.96 16 Total: -1.00 -82.92 392.29 -1.24 -84.16 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -0.67 Total: 10.73 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 7.79 Total: 10.72 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -9.94 Total: -132.10 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.11 Total: -30.57 kcal Atomic # 14 Polarization: 55.36 SS G_CDS: 1.69 Total: 57.05 kcal Total: -82.92 -1.24 -84.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699677621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.616 kcal (2) G-P(sol) polarization free energy of solvation -82.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds