Wall clock time and date at job start Tue Mar 31 2020 21:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47127 * 239.99753 * 2 1 3 5 5 N 1.46496 * 109.46935 * 184.99868 * 4 2 1 6 6 C 1.34777 * 119.99812 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00096 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99882 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.46848 * 300.00170 * 8 6 5 10 10 C 1.52992 * 109.47246 * 60.00036 * 8 6 5 11 11 N 1.46497 * 109.47066 * 180.02562 * 8 6 5 12 12 N 1.29016 * 126.43779 * 300.02366 * 11 8 6 13 13 N 1.28739 * 108.81334 * 179.97438 * 12 11 8 14 14 N 1.28840 * 109.39398 * 0.02562 * 13 12 11 15 15 C 1.31079 * 107.99183 * 359.75069 * 14 13 12 16 16 C 1.50697 * 126.65995 * 180.24620 * 15 14 13 17 17 C 1.53002 * 109.47010 * 240.16840 * 16 15 14 18 18 C 1.52991 * 109.47545 * 0.16971 * 16 15 14 19 19 C 1.53005 * 109.46920 * 120.17057 * 16 15 14 20 20 N 1.46497 * 109.47251 * 119.99545 * 2 1 3 21 21 C 1.46503 * 119.99916 * 60.00205 * 20 2 1 22 22 C 1.36938 * 120.00233 * 240.00290 * 20 2 1 23 23 H 1.07997 * 119.99863 * 339.93359 * 22 20 2 24 24 C 1.38813 * 119.99743 * 159.93101 * 22 20 2 25 25 N 1.31617 * 120.00417 * 344.40784 * 24 22 20 26 26 Si 1.86806 * 119.99435 * 164.12889 * 24 22 20 27 27 H 1.48499 * 109.47046 * 84.87334 * 26 24 22 28 28 H 1.48505 * 109.46852 * 204.86980 * 26 24 22 29 29 H 1.48494 * 109.47453 * 324.86871 * 26 24 22 30 30 H 1.09005 * 109.47136 * 300.00100 * 1 2 3 31 31 H 1.09002 * 109.46990 * 60.00251 * 1 2 3 32 32 H 1.09003 * 109.46910 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46924 * 304.99987 * 4 2 1 34 34 H 1.08996 * 109.47194 * 65.00270 * 4 2 1 35 35 H 0.97007 * 120.00631 * 359.97438 * 5 4 2 36 36 H 1.08994 * 109.47258 * 180.02562 * 10 8 6 37 37 H 1.09005 * 109.47285 * 300.00028 * 10 8 6 38 38 H 1.09001 * 109.47114 * 59.99735 * 10 8 6 39 39 H 1.08999 * 109.47094 * 60.00136 * 17 16 15 40 40 H 1.08995 * 109.47386 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.46837 * 300.00239 * 17 16 15 42 42 H 1.09009 * 109.47044 * 59.99764 * 18 16 15 43 43 H 1.08995 * 109.47674 * 179.97438 * 18 16 15 44 44 H 1.09006 * 109.47296 * 299.99999 * 18 16 15 45 45 H 1.09004 * 109.47069 * 59.99922 * 19 16 15 46 46 H 1.08998 * 109.46698 * 179.97438 * 19 16 15 47 47 H 1.08998 * 109.47338 * 299.99476 * 19 16 15 48 48 H 1.09000 * 109.46977 * 265.45542 * 21 20 2 49 49 H 1.09000 * 109.47123 * 25.45485 * 21 20 2 50 50 H 1.09000 * 109.47486 * 145.45428 * 21 20 2 51 51 H 0.97003 * 119.99645 * 179.72274 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1730 -1.4292 -2.1906 7 8 3.5700 -1.8843 -3.1393 8 6 5.6749 -1.5378 -2.1299 9 1 6.1098 -0.5394 -2.0842 10 6 6.0792 -2.3278 -0.8837 11 7 6.1633 -2.2284 -3.3261 12 7 5.8568 -3.4248 -3.6990 13 7 6.4764 -3.6893 -4.7961 14 7 7.1870 -2.6718 -5.1421 15 6 7.0121 -1.7320 -4.2452 16 6 7.6414 -0.3627 -4.2423 17 6 8.4795 -0.1894 -2.9741 18 6 8.5394 -0.2115 -5.4717 19 6 6.5441 0.7029 -4.2781 20 7 2.0184 -0.6905 1.1962 21 6 1.6645 -2.0931 1.4281 22 6 2.8056 -0.0249 2.0976 23 1 3.3315 0.8696 1.7981 24 6 2.9276 -0.5000 3.3962 25 7 2.0718 -1.3885 3.8550 26 14 4.3111 0.1160 4.4898 27 1 3.8992 1.3852 5.1415 28 1 4.6095 -0.9007 5.5304 29 1 5.5244 0.3530 3.6671 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 1.7517 -0.1584 -2.1369 35 1 3.9825 -0.4621 -0.4319 36 1 7.1655 -2.4059 -0.8396 37 1 5.7159 -1.8136 0.0062 38 1 5.6443 -3.3262 -0.9294 39 1 9.2613 -0.9486 -2.9486 40 1 8.9344 0.8011 -2.9717 41 1 7.8397 -0.2971 -2.0982 42 1 7.9423 -0.3350 -6.3753 43 1 8.9942 0.7791 -5.4698 44 1 9.3212 -0.9707 -5.4463 45 1 5.9043 0.5952 -3.4021 46 1 6.9993 1.6933 -4.2755 47 1 5.9470 0.5795 -5.1816 48 1 0.7830 -2.1445 2.0671 49 1 1.4508 -2.5763 0.4747 50 1 2.4964 -2.6020 1.9150 51 1 2.1596 -1.7234 4.7612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700460382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:54 Heat of formation + Delta-G solvation = 97.497094 kcal Electronic energy + Delta-G solvation = -31592.071611 eV Core-core repulsion = 27565.234124 eV Total energy + Delta-G solvation = -4026.837487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -44.22241 -39.91164 -37.75452 -36.99801 -35.74945 -34.11260 -32.51020 -31.77480 -31.08706 -29.42933 -27.86858 -27.81674 -26.28597 -26.15346 -25.31451 -23.92487 -23.32405 -22.77911 -20.50947 -20.10595 -19.49939 -17.79392 -17.27348 -17.05498 -16.55176 -15.98689 -15.69431 -15.48138 -14.90665 -14.60441 -14.48423 -14.17607 -13.95513 -13.43822 -13.10079 -12.95351 -12.90997 -12.83293 -12.81777 -12.60102 -12.44889 -12.35643 -12.16141 -12.11721 -12.00437 -11.80597 -11.56203 -11.53424 -11.26115 -11.21584 -11.03726 -10.95558 -10.94515 -10.86348 -10.55219 -10.42638 -10.07187 -10.02751 -9.92365 -9.71510 -8.84089 -8.70271 -6.97390 -5.88925 -3.34155 1.25541 1.77970 2.29998 2.48205 3.16939 3.24124 3.29384 3.33404 3.59917 4.00213 4.14452 4.32037 4.34532 4.41213 4.54275 4.63221 4.85746 5.07003 5.19072 5.22993 5.25885 5.26385 5.28272 5.31688 5.38424 5.40848 5.43105 5.49511 5.55239 5.65284 5.74808 5.76933 5.79977 5.86282 5.93674 5.97426 6.05475 6.12196 6.15758 6.31313 6.56598 6.66890 6.72162 6.86682 7.26134 7.56785 7.61754 7.66786 8.19000 8.23263 8.68699 9.05656 9.69654 10.18549 11.15564 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.003415 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.962014 B = 8196.464078 C = 8941.287028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.069 0.931 4 C 0.107 3.893 5 N -0.693 5.693 6 C 0.501 3.499 7 O -0.527 6.527 8 C 0.117 3.883 9 H 0.142 0.858 10 C -0.164 4.164 11 N -0.284 5.284 12 N -0.063 5.063 13 N -0.086 5.086 14 N -0.303 5.303 15 C 0.190 3.810 16 C 0.014 3.986 17 C -0.153 4.153 18 C -0.130 4.130 19 C -0.151 4.151 20 N -0.594 5.594 21 C 0.164 3.836 22 C -0.268 4.268 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.412 0.588 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.028 0.972 49 H -0.001 1.001 50 H 0.043 0.957 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.750 6.182 -11.365 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.088 0.912 4 C -0.019 4.019 5 N -0.345 5.345 6 C 0.283 3.717 7 O -0.403 6.403 8 C 0.010 3.990 9 H 0.159 0.841 10 C -0.222 4.222 11 N -0.085 5.085 12 N -0.049 5.049 13 N -0.079 5.079 14 N -0.151 5.151 15 C -0.088 4.088 16 C 0.011 3.989 17 C -0.211 4.211 18 C -0.188 4.188 19 C -0.209 4.209 20 N -0.317 5.317 21 C 0.020 3.980 22 C -0.397 4.397 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.249 0.751 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.018 0.982 50 H 0.061 0.939 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.056 4.420 -12.417 16.578 hybrid contribution 0.706 1.183 1.717 2.202 sum 10.762 5.602 -10.700 16.177 Atomic orbital electron populations 1.22193 0.97299 1.01511 1.00694 1.20606 0.92731 0.95446 0.86291 0.91250 1.22065 0.78420 1.01773 0.99601 1.45772 1.08804 1.57566 1.22331 1.19991 0.87997 0.79751 0.83954 1.90788 1.69005 1.47098 1.33386 1.21991 0.95319 0.98484 0.83160 0.84083 1.22213 1.03226 1.02314 0.94445 1.48057 1.30335 1.10719 1.19410 1.78948 1.18016 0.97618 1.10278 1.78615 1.05760 1.18476 1.05075 1.74932 1.19827 0.97911 1.22457 1.25976 0.95188 0.99693 0.87932 1.19241 0.95634 0.84995 0.99079 1.22121 1.00024 1.03806 0.95131 1.21738 0.99109 1.02368 0.95604 1.22089 0.97581 0.98262 1.02992 1.44042 1.58254 1.08089 1.21339 1.20732 0.99875 0.83245 0.94183 1.19162 1.20333 1.09659 0.90525 0.91234 1.24967 0.98366 0.99439 0.96435 1.70093 1.34855 1.33166 1.16165 0.86370 0.82058 0.78016 0.80536 1.21372 1.21613 1.20632 0.92082 0.93926 0.93084 0.91677 0.92184 0.75054 0.90475 0.87741 0.89733 0.91400 0.90058 0.92135 0.91428 0.91264 0.91397 0.92499 0.90062 0.91403 0.95396 0.98238 0.93862 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.19 37.16 0.34 -2.23 16 2 C 0.16 2.73 2.87 -67.93 -0.19 2.53 16 3 H 0.07 1.16 7.85 -51.93 -0.41 0.76 16 4 C 0.11 1.70 4.93 -4.04 -0.02 1.68 16 5 N -0.69 -10.18 5.28 -60.30 -0.32 -10.50 16 6 C 0.50 7.60 7.19 -10.98 -0.08 7.53 16 7 O -0.53 -10.14 15.88 5.56 0.09 -10.05 16 8 C 0.12 1.40 2.25 -69.08 -0.16 1.24 16 9 H 0.14 1.24 3.73 -51.93 -0.19 1.04 16 10 C -0.16 -1.80 9.31 37.15 0.35 -1.46 16 11 N -0.28 -4.03 2.76 -52.93 -0.15 -4.18 16 12 N -0.06 -1.10 12.42 60.35 0.75 -0.36 16 13 N -0.09 -1.54 13.43 60.35 0.81 -0.73 16 14 N -0.30 -4.76 11.71 32.70 0.38 -4.38 16 15 C 0.19 2.48 6.40 -155.43 -1.00 1.48 16 16 C 0.01 0.12 0.75 -155.66 -0.12 0.01 16 17 C -0.15 -1.00 8.31 37.16 0.31 -0.70 16 18 C -0.13 -0.99 8.00 37.15 0.30 -0.69 16 19 C -0.15 -1.19 8.31 37.16 0.31 -0.89 16 20 N -0.59 -12.57 2.29 -173.48 -0.40 -12.97 16 21 C 0.16 3.66 8.01 59.85 0.48 4.14 16 22 C -0.27 -6.22 9.34 -15.06 -0.14 -6.36 16 23 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 24 C 0.01 0.19 5.05 -17.43 -0.09 0.10 16 25 N -0.90 -24.05 10.69 55.49 0.59 -23.46 16 26 Si 0.90 19.45 29.58 -169.99 -5.03 14.42 16 27 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 33 H 0.06 1.15 6.86 -51.93 -0.36 0.79 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.41 5.81 7.31 -40.82 -0.30 5.51 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.10 7.57 -51.93 -0.39 0.71 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.38 5.58 -51.93 -0.29 0.09 16 42 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.47 5.58 -51.93 -0.29 0.18 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.03 0.69 7.44 -51.93 -0.39 0.31 16 49 H 0.00 -0.02 6.53 -51.93 -0.34 -0.36 16 50 H 0.04 1.04 7.17 -51.93 -0.37 0.67 16 51 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -31.54 402.39 -5.25 -36.79 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.34 Total: 2.95 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 0.29 Total: 6.38 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 1.67 Total: -56.56 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.54 -5.25 -36.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700460382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.291 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds