Wall clock time and date at job start Tue Mar 31 2020 21:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47127 * 239.99753 * 2 1 3 5 5 N 1.46496 * 109.46935 * 184.99868 * 4 2 1 6 6 C 1.34777 * 119.99812 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00096 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99882 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.46848 * 300.00170 * 8 6 5 10 10 C 1.52992 * 109.47246 * 60.00036 * 8 6 5 11 11 N 1.46497 * 109.47066 * 180.02562 * 8 6 5 12 12 N 1.29016 * 126.43779 * 300.02366 * 11 8 6 13 13 N 1.28739 * 108.81334 * 179.97438 * 12 11 8 14 14 N 1.28840 * 109.39398 * 0.02562 * 13 12 11 15 15 C 1.31079 * 107.99183 * 359.75069 * 14 13 12 16 16 C 1.50697 * 126.65995 * 180.24620 * 15 14 13 17 17 C 1.53002 * 109.47010 * 240.16840 * 16 15 14 18 18 C 1.52991 * 109.47545 * 0.16971 * 16 15 14 19 19 C 1.53005 * 109.46920 * 120.17057 * 16 15 14 20 20 N 1.46497 * 109.47251 * 119.99545 * 2 1 3 21 21 C 1.46503 * 119.99916 * 60.00205 * 20 2 1 22 22 C 1.36938 * 120.00233 * 240.00290 * 20 2 1 23 23 H 1.07997 * 119.99863 * 339.93359 * 22 20 2 24 24 C 1.38813 * 119.99743 * 159.93101 * 22 20 2 25 25 N 1.31617 * 120.00417 * 344.40784 * 24 22 20 26 26 Si 1.86806 * 119.99435 * 164.12889 * 24 22 20 27 27 H 1.48499 * 109.47046 * 84.87334 * 26 24 22 28 28 H 1.48505 * 109.46852 * 204.86980 * 26 24 22 29 29 H 1.48494 * 109.47453 * 324.86871 * 26 24 22 30 30 H 1.09005 * 109.47136 * 300.00100 * 1 2 3 31 31 H 1.09002 * 109.46990 * 60.00251 * 1 2 3 32 32 H 1.09003 * 109.46910 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46924 * 304.99987 * 4 2 1 34 34 H 1.08996 * 109.47194 * 65.00270 * 4 2 1 35 35 H 0.97007 * 120.00631 * 359.97438 * 5 4 2 36 36 H 1.08994 * 109.47258 * 180.02562 * 10 8 6 37 37 H 1.09005 * 109.47285 * 300.00028 * 10 8 6 38 38 H 1.09001 * 109.47114 * 59.99735 * 10 8 6 39 39 H 1.08999 * 109.47094 * 60.00136 * 17 16 15 40 40 H 1.08995 * 109.47386 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.46837 * 300.00239 * 17 16 15 42 42 H 1.09009 * 109.47044 * 59.99764 * 18 16 15 43 43 H 1.08995 * 109.47674 * 179.97438 * 18 16 15 44 44 H 1.09006 * 109.47296 * 299.99999 * 18 16 15 45 45 H 1.09004 * 109.47069 * 59.99922 * 19 16 15 46 46 H 1.08998 * 109.46698 * 179.97438 * 19 16 15 47 47 H 1.08998 * 109.47338 * 299.99476 * 19 16 15 48 48 H 1.09000 * 109.46977 * 265.45542 * 21 20 2 49 49 H 1.09000 * 109.47123 * 25.45485 * 21 20 2 50 50 H 1.09000 * 109.47486 * 145.45428 * 21 20 2 51 51 H 0.97003 * 119.99645 * 179.72274 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1730 -1.4292 -2.1906 7 8 3.5700 -1.8843 -3.1393 8 6 5.6749 -1.5378 -2.1299 9 1 6.1098 -0.5394 -2.0842 10 6 6.0792 -2.3278 -0.8837 11 7 6.1633 -2.2284 -3.3261 12 7 5.8568 -3.4248 -3.6990 13 7 6.4764 -3.6893 -4.7961 14 7 7.1870 -2.6718 -5.1421 15 6 7.0121 -1.7320 -4.2452 16 6 7.6414 -0.3627 -4.2423 17 6 8.4795 -0.1894 -2.9741 18 6 8.5394 -0.2115 -5.4717 19 6 6.5441 0.7029 -4.2781 20 7 2.0184 -0.6905 1.1962 21 6 1.6645 -2.0931 1.4281 22 6 2.8056 -0.0249 2.0976 23 1 3.3315 0.8696 1.7981 24 6 2.9276 -0.5000 3.3962 25 7 2.0718 -1.3885 3.8550 26 14 4.3111 0.1160 4.4898 27 1 3.8992 1.3852 5.1415 28 1 4.6095 -0.9007 5.5304 29 1 5.5244 0.3530 3.6671 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 1.7517 -0.1584 -2.1369 35 1 3.9825 -0.4621 -0.4319 36 1 7.1655 -2.4059 -0.8396 37 1 5.7159 -1.8136 0.0062 38 1 5.6443 -3.3262 -0.9294 39 1 9.2613 -0.9486 -2.9486 40 1 8.9344 0.8011 -2.9717 41 1 7.8397 -0.2971 -2.0982 42 1 7.9423 -0.3350 -6.3753 43 1 8.9942 0.7791 -5.4698 44 1 9.3212 -0.9707 -5.4463 45 1 5.9043 0.5952 -3.4021 46 1 6.9993 1.6933 -4.2755 47 1 5.9470 0.5795 -5.1816 48 1 0.7830 -2.1445 2.0671 49 1 1.4508 -2.5763 0.4747 50 1 2.4964 -2.6020 1.9150 51 1 2.1596 -1.7234 4.7612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700460382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:53 Heat of formation + Delta-G solvation = 76.772539 kcal Electronic energy + Delta-G solvation = -31592.970295 eV Core-core repulsion = 27565.234124 eV Total energy + Delta-G solvation = -4027.736171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.35841 -41.15899 -38.65903 -38.35495 -36.87175 -35.58331 -33.98349 -32.97752 -32.20843 -31.06165 -28.49884 -28.33465 -27.99527 -27.49056 -26.38466 -24.98979 -24.93483 -24.00653 -21.57807 -21.18437 -20.85061 -19.04014 -18.75278 -18.34864 -17.67240 -17.13488 -16.88603 -16.77287 -16.22506 -15.84622 -15.49793 -15.21239 -14.98881 -14.68303 -14.50519 -14.35322 -14.10538 -13.91973 -13.78604 -13.55892 -13.51215 -13.27207 -13.07385 -13.03771 -12.93573 -12.86442 -12.72999 -12.69670 -12.62004 -12.48357 -12.30172 -12.28175 -12.16900 -12.06637 -12.02855 -11.78488 -11.73831 -11.51386 -11.20441 -10.91606 -10.55755 -10.12347 -8.78778 -7.75093 -5.20854 0.14918 0.75837 1.12498 1.29093 1.55337 1.57055 1.64602 2.01163 2.57733 2.76623 3.04190 3.35517 3.41066 3.41562 3.46040 3.65897 3.80079 3.94668 4.02744 4.03949 4.24934 4.34577 4.40472 4.42362 4.56404 4.58863 4.62601 4.69945 4.71014 4.74764 4.79278 4.86830 4.91024 4.93982 4.94597 4.97828 5.04222 5.07003 5.23290 5.23832 5.29036 5.29893 5.39354 5.41771 5.50260 5.72127 5.78100 6.37012 6.40536 7.01721 7.20490 7.50505 7.92414 8.38489 9.29108 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.003415 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.962014 B = 8196.464078 C = 8941.287028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.686 5.686 6 C 0.503 3.497 7 O -0.570 6.570 8 C 0.120 3.880 9 H 0.181 0.819 10 C -0.161 4.161 11 N -0.284 5.284 12 N -0.095 5.095 13 N -0.114 5.114 14 N -0.326 5.326 15 C 0.203 3.797 16 C 0.012 3.988 17 C -0.153 4.153 18 C -0.129 4.129 19 C -0.151 4.151 20 N -0.601 5.601 21 C 0.185 3.815 22 C -0.255 4.255 23 H 0.091 0.909 24 C -0.051 4.051 25 N -0.940 5.940 26 Si 0.959 3.041 27 H -0.292 1.292 28 H -0.309 1.309 29 H -0.254 1.254 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.418 0.582 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.115 0.885 47 H 0.049 0.951 48 H -0.004 1.004 49 H 0.015 0.985 50 H 0.018 0.982 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.866 9.389 -11.828 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.337 5.337 6 C 0.286 3.714 7 O -0.449 6.449 8 C 0.015 3.985 9 H 0.198 0.802 10 C -0.219 4.219 11 N -0.086 5.086 12 N -0.080 5.080 13 N -0.107 5.107 14 N -0.174 5.174 15 C -0.075 4.075 16 C 0.009 3.991 17 C -0.210 4.210 18 C -0.187 4.187 19 C -0.209 4.209 20 N -0.325 5.325 21 C 0.040 3.960 22 C -0.385 4.385 23 H 0.109 0.891 24 C -0.247 4.247 25 N -0.587 5.587 26 Si 0.788 3.212 27 H -0.220 1.220 28 H -0.237 1.237 29 H -0.178 1.178 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.256 0.744 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.134 0.866 47 H 0.068 0.932 48 H 0.014 0.986 49 H 0.033 0.967 50 H 0.037 0.963 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.190 7.665 -12.903 19.335 hybrid contribution 0.006 0.258 1.775 1.794 sum 12.195 7.923 -11.128 18.312 Atomic orbital electron populations 1.22103 0.96520 1.01064 1.01435 1.20772 0.93292 0.95848 0.84937 0.89742 1.21857 0.79082 1.00597 0.99349 1.45695 1.08363 1.57281 1.22382 1.20449 0.89310 0.78573 0.83052 1.90779 1.70271 1.48822 1.35074 1.22239 0.93058 1.00348 0.82811 0.80199 1.22232 1.04720 1.00859 0.94075 1.48201 1.30324 1.10017 1.20010 1.78877 1.18983 0.99491 1.10688 1.78570 1.06656 1.19801 1.05668 1.74862 1.20422 0.98374 1.23723 1.26910 0.93697 1.00610 0.86323 1.19623 0.96163 0.82417 1.00907 1.22184 0.99647 1.05537 0.93660 1.21763 0.98497 1.04013 0.94399 1.22134 0.97197 0.99600 1.01924 1.44191 1.58395 1.07752 1.22115 1.20351 0.97438 0.84320 0.93902 1.19640 1.19302 1.09248 0.90287 0.89150 1.25691 1.00507 1.00326 0.98129 1.70279 1.37010 1.35505 1.15927 0.85418 0.80665 0.76381 0.78688 1.21954 1.23669 1.17785 0.93860 0.90585 0.94192 0.93743 0.90493 0.74366 0.88035 0.86836 0.92173 0.91795 0.86989 0.91623 0.93032 0.88005 0.92182 0.92790 0.86642 0.93224 0.98577 0.96674 0.96315 0.94786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.19 71.98 0.66 -4.05 16 2 C 0.16 5.13 2.87 44.99 0.13 5.26 16 3 H 0.08 2.52 7.85 -2.38 -0.02 2.50 16 4 C 0.12 3.48 4.93 86.38 0.43 3.91 16 5 N -0.69 -18.67 5.28 -463.07 -2.45 -21.12 16 6 C 0.50 14.53 7.19 87.66 0.63 15.16 16 7 O -0.57 -21.79 15.88 -3.01 -0.05 -21.84 16 8 C 0.12 2.62 2.25 44.25 0.10 2.72 16 9 H 0.18 2.45 3.73 -2.39 -0.01 2.44 16 10 C -0.16 -3.21 9.31 71.98 0.67 -2.54 16 11 N -0.28 -7.81 2.76 -321.37 -0.89 -8.69 16 12 N -0.09 -3.36 12.42 37.02 0.46 -2.90 16 13 N -0.11 -4.16 13.43 37.01 0.50 -3.67 16 14 N -0.33 -10.27 11.71 -50.45 -0.59 -10.86 16 15 C 0.20 5.03 6.40 138.13 0.88 5.91 16 16 C 0.01 0.18 0.75 -52.93 -0.04 0.14 16 17 C -0.15 -1.34 8.31 71.98 0.60 -0.74 16 18 C -0.13 -1.63 8.00 71.98 0.58 -1.05 16 19 C -0.15 -1.85 8.31 71.98 0.60 -1.25 16 20 N -0.60 -24.78 2.29 -702.77 -1.61 -26.39 16 21 C 0.19 8.38 8.01 127.77 1.02 9.41 16 22 C -0.26 -11.37 9.34 84.03 0.79 -10.59 16 23 H 0.09 3.63 7.81 -2.91 -0.02 3.60 16 24 C -0.05 -2.52 5.05 84.86 0.43 -2.09 16 25 N -0.94 -51.42 10.69 21.65 0.23 -51.19 16 26 Si 0.96 39.21 29.58 68.60 2.03 41.24 16 27 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.31 -13.52 7.11 99.48 0.71 -12.82 16 29 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 30 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.31 7.67 -2.39 -0.02 1.29 16 33 H 0.04 1.53 6.86 -2.39 -0.02 1.52 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.42 10.51 7.31 -92.70 -0.68 9.83 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 2.08 7.57 -2.38 -0.02 2.06 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.06 0.51 5.58 -2.39 -0.01 0.49 16 42 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.05 0.69 5.58 -2.38 -0.01 0.67 16 46 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.00 -0.21 7.44 -2.39 -0.02 -0.23 16 49 H 0.01 0.62 6.53 -2.39 -0.02 0.60 16 50 H 0.02 0.91 7.17 -2.39 -0.02 0.89 16 51 H 0.24 13.26 8.31 -92.71 -0.77 12.49 16 Total: -1.00 -72.03 402.39 5.37 -66.66 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.26 Total: 18.56 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 7.47 Total: 20.20 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -4.34 Total: -124.82 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.05 Total: -21.84 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -72.03 5.37 -66.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700460382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.432 kcal (2) G-P(sol) polarization free energy of solvation -72.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds