Wall clock time and date at job start Tue Mar 31 2020 20:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48806 * 111.18301 * 2 1 4 4 C 1.54945 * 103.34820 * 159.50525 * 3 2 1 5 5 C 1.54599 * 102.91970 * 322.69157 * 4 3 2 6 6 C 1.47899 * 110.99777 * 117.33530 * 2 1 3 7 7 H 1.09000 * 109.92188 * 333.70902 * 6 2 1 8 8 C 1.50706 * 109.91807 * 94.80200 * 6 2 1 9 9 O 1.21283 * 119.99503 * 18.19538 * 8 6 2 10 10 N 1.34773 * 120.00081 * 197.92265 * 8 6 2 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 6 12 12 H 1.09001 * 112.84880 * 23.79516 * 11 10 8 13 13 C 1.53773 * 113.61628 * 154.99674 * 11 10 8 14 14 C 1.53782 * 87.08277 * 89.11500 * 13 11 10 15 15 H 1.09002 * 113.61249 * 270.88538 * 14 13 11 16 16 C 1.52997 * 113.61802 * 140.06576 * 14 13 11 17 17 N 1.46891 * 109.47263 * 175.00257 * 16 14 13 18 18 C 1.46905 * 111.00006 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47077 * 179.97438 * 18 17 16 20 20 O 1.21299 * 120.00048 * 359.97438 * 19 18 17 21 21 N 1.34769 * 119.99893 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00133 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00040 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00150 * 179.97438 * 22 21 19 25 25 N 1.31407 * 119.99901 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00013 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47241 * 60.00158 * 26 24 22 28 28 H 1.48496 * 109.46967 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47204 * 299.99645 * 26 24 22 30 30 C 1.53774 * 113.61016 * 252.49438 * 11 10 8 31 31 H 1.08996 * 109.47324 * 302.66516 * 1 2 3 32 32 H 1.09002 * 109.47134 * 62.66096 * 1 2 3 33 33 H 1.08997 * 109.47303 * 182.66356 * 1 2 3 34 34 H 1.08995 * 110.52303 * 41.07774 * 3 2 1 35 35 H 1.09000 * 110.70251 * 278.01861 * 3 2 1 36 36 H 1.08994 * 110.72463 * 204.33030 * 4 3 2 37 37 H 1.08995 * 110.87444 * 81.11632 * 4 3 2 38 38 H 1.08999 * 110.30468 * 263.04279 * 5 4 3 39 39 H 1.08993 * 110.31167 * 140.87562 * 5 4 3 40 40 H 0.96998 * 120.00525 * 359.97438 * 10 8 6 41 41 H 1.09002 * 113.61356 * 203.66296 * 13 11 10 42 42 H 1.09004 * 113.61557 * 334.48131 * 13 11 10 43 43 H 1.09005 * 109.46842 * 295.00321 * 16 14 13 44 44 H 1.09000 * 109.47028 * 54.99811 * 16 14 13 45 45 H 1.00897 * 111.00570 * 56.04207 * 17 16 14 46 46 H 1.08990 * 109.47016 * 299.99934 * 18 17 16 47 47 H 1.08998 * 109.46971 * 59.99717 * 18 17 16 48 48 H 0.97006 * 120.00463 * 359.97438 * 21 19 18 49 49 H 0.97002 * 120.00306 * 179.97438 * 25 24 22 50 50 H 1.09001 * 113.61784 * 25.43572 * 30 11 10 51 51 H 1.09005 * 113.61183 * 156.33104 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3875 0.0000 4 6 3.4527 1.2108 0.5278 5 6 3.2974 0.1059 1.5980 6 6 1.9990 -0.6340 1.2266 7 1 1.2743 -0.5412 2.0355 8 6 2.2937 -2.0889 0.9663 9 8 2.4078 -2.4901 -0.1726 10 7 2.4359 -2.9430 1.9991 11 6 2.7229 -4.3572 1.7460 12 1 3.1953 -4.5266 0.7784 13 6 3.4387 -5.0587 2.9123 14 6 2.0430 -5.3866 3.4685 15 1 1.6436 -4.6158 4.1277 16 6 1.9349 -6.7919 4.0637 17 7 0.6091 -6.9654 4.6719 18 6 0.4687 -8.3067 5.2545 19 6 -0.9006 -8.4469 5.8682 20 8 -1.6824 -7.5205 5.8249 21 7 -1.2561 -9.6013 6.4659 22 6 -2.5016 -9.7287 7.0246 23 1 -3.1977 -8.9039 6.9861 24 6 -2.8683 -10.9191 7.6405 25 7 -2.0215 -11.9229 7.6870 26 14 -4.5650 -11.0925 8.4024 27 1 -5.6000 -10.8965 7.3557 28 1 -4.7068 -12.4482 8.9916 29 1 -4.7368 -10.0706 9.4661 30 6 1.5296 -5.2869 2.0223 31 1 -0.3634 0.5546 0.8651 32 1 -0.3633 0.4720 -0.9129 33 1 -0.3634 -1.0265 0.0478 34 1 1.4273 2.0219 0.6707 35 1 2.0133 1.7982 -1.0097 36 1 3.8148 2.1352 0.9776 37 1 4.1201 0.8842 -0.2696 38 1 3.2096 0.5495 2.5897 39 1 4.1458 -0.5774 1.5622 40 1 2.3489 -2.6213 2.9101 41 1 4.0061 -5.9390 2.6101 42 1 4.0134 -4.3807 3.5432 43 1 2.0727 -7.5319 3.2754 44 1 2.7040 -6.9242 4.8247 45 1 -0.1228 -6.7843 4.0015 46 1 0.5961 -9.0568 4.4743 47 1 1.2276 -8.4499 6.0237 48 1 -0.6307 -10.3421 6.5009 49 1 -2.2773 -12.7538 8.1172 50 1 0.5619 -4.7928 1.9356 51 1 1.5751 -6.2295 1.4769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700637609.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:04 Heat of formation + Delta-G solvation = -43.148227 kcal Electronic energy + Delta-G solvation = -28617.761320 eV Core-core repulsion = 24552.532243 eV Total energy + Delta-G solvation = -4065.229077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.75786 -39.49345 -38.24629 -37.71526 -35.19196 -33.87249 -33.29801 -32.55684 -31.21474 -29.96695 -28.36743 -26.12895 -25.96558 -25.56483 -23.90595 -22.90224 -21.87022 -21.63786 -20.39470 -19.50416 -19.07636 -17.88463 -17.71974 -16.50547 -16.48159 -16.10188 -15.62532 -15.44871 -15.04158 -14.66058 -14.54664 -14.47129 -14.14799 -14.11632 -13.95244 -13.73758 -13.59110 -13.06513 -12.98008 -12.87520 -12.62568 -12.40611 -12.27925 -11.97480 -11.83614 -11.69475 -11.55547 -11.50710 -11.49282 -11.26943 -11.03866 -10.94446 -10.60382 -10.43928 -10.26492 -10.19663 -9.96548 -9.49478 -9.21474 -8.83895 -8.44797 -8.03703 -7.94982 -6.41074 -3.81952 2.41561 2.72645 3.20444 3.25975 3.30435 3.63493 3.91974 4.06905 4.10224 4.14177 4.26633 4.31942 4.39727 4.56934 4.61997 4.69150 4.73632 4.85138 4.95662 4.97914 5.05894 5.14972 5.19370 5.26055 5.27727 5.35228 5.39203 5.47692 5.51466 5.52056 5.57220 5.58598 5.62312 5.68150 5.74373 5.80947 5.89655 6.00125 6.01830 6.10973 6.27872 6.30702 6.45457 6.52201 7.25700 7.29901 7.55442 7.69918 8.06934 8.07334 8.62161 9.18420 9.55157 10.06833 10.76599 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.001613 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.641609 B =17359.551635 C =18182.191173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.499 5.499 3 C 0.035 3.965 4 C -0.122 4.122 5 C -0.120 4.120 6 C 0.046 3.954 7 H 0.075 0.925 8 C 0.523 3.477 9 O -0.515 6.515 10 N -0.715 5.715 11 C 0.122 3.878 12 H 0.100 0.900 13 C -0.139 4.139 14 C -0.105 4.105 15 H 0.099 0.901 16 C 0.068 3.932 17 N -0.669 5.669 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.274 1.274 30 C -0.150 4.150 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.400 0.600 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.071 0.929 45 H 0.349 0.651 46 H 0.042 0.958 47 H 0.085 0.915 48 H 0.392 0.608 49 H 0.272 0.728 50 H 0.071 0.929 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.545 22.392 -12.560 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.223 5.223 3 C -0.092 4.092 4 C -0.160 4.160 5 C -0.158 4.158 6 C -0.066 4.066 7 H 0.093 0.907 8 C 0.307 3.693 9 O -0.388 6.388 10 N -0.367 5.367 11 C 0.016 3.984 12 H 0.118 0.882 13 C -0.178 4.178 14 C -0.124 4.124 15 H 0.117 0.883 16 C -0.061 4.061 17 N -0.301 5.301 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.189 4.189 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.234 0.766 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.168 0.832 46 H 0.060 0.940 47 H 0.103 0.897 48 H 0.225 0.775 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.390 22.525 -13.232 29.825 hybrid contribution -0.990 -0.775 0.933 1.565 sum 13.400 21.750 -12.300 28.353 Atomic orbital electron populations 1.22555 0.86964 1.02515 1.01173 1.64386 1.08423 1.14616 1.34908 1.23327 0.94931 0.89283 1.01656 1.22483 0.96850 0.98281 0.98430 1.22352 0.95998 0.97814 0.99641 1.22372 0.98323 0.92682 0.93207 0.90678 1.20390 0.76591 0.87200 0.85095 1.90699 1.48171 1.78235 1.21681 1.45705 1.73417 1.08268 1.09353 1.21787 0.97025 0.79909 0.99662 0.88171 1.23338 0.96773 1.00686 0.96989 1.22614 0.95849 0.98192 0.95709 0.88310 1.21951 0.92274 0.94857 0.97056 1.60093 1.03534 1.27528 1.38927 1.21671 0.97792 0.89854 0.98948 1.19833 0.88774 0.84161 0.84627 1.90518 1.53447 1.39758 1.63105 1.41860 1.15480 1.12848 1.49858 1.19659 0.91304 0.99984 1.32053 0.87993 1.25259 0.99721 0.95133 0.97807 1.69603 1.35877 1.04312 1.44542 0.85912 0.81727 0.77224 0.79316 1.19934 1.20975 1.19904 1.23523 0.98794 0.99996 0.96591 0.95160 0.90700 0.91115 0.93390 0.89472 0.90509 0.90323 0.90241 0.90413 0.76576 0.88746 0.90850 0.95403 0.91068 0.83237 0.93975 0.89672 0.77458 0.91832 0.90984 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.41 60.06 0.57 0.69 16 2 N -0.50 -4.53 4.77 -231.92 -1.11 -5.64 16 3 C 0.04 0.23 6.58 -1.74 -0.01 0.22 16 4 C -0.12 -0.69 7.07 -24.86 -0.18 -0.87 16 5 C -0.12 -0.71 6.56 -25.37 -0.17 -0.88 16 6 C 0.05 0.37 2.87 -67.79 -0.19 0.18 16 7 H 0.08 0.50 7.73 -51.93 -0.40 0.10 16 8 C 0.52 5.52 6.86 -10.98 -0.08 5.44 16 9 O -0.51 -7.67 16.16 5.56 0.09 -7.58 16 10 N -0.71 -6.03 5.26 -53.02 -0.28 -6.31 16 11 C 0.12 1.11 4.33 -67.12 -0.29 0.82 16 12 H 0.10 1.06 7.46 -51.93 -0.39 0.67 16 13 C -0.14 -1.07 7.39 -25.92 -0.19 -1.26 16 14 C -0.10 -1.02 3.77 -89.81 -0.34 -1.36 16 15 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 16 C 0.07 0.80 5.52 -3.83 -0.02 0.78 16 17 N -0.67 -10.75 6.13 -115.06 -0.70 -11.46 16 18 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 19 C 0.44 10.52 7.82 -10.99 -0.09 10.44 16 20 O -0.58 -16.03 15.78 5.54 0.09 -15.94 16 21 N -0.56 -14.43 5.29 -10.96 -0.06 -14.48 16 22 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 26 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 C -0.15 -1.50 7.43 -25.92 -0.19 -1.69 16 31 H 0.03 0.20 8.01 -51.93 -0.42 -0.22 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.26 7.97 -51.93 -0.41 -0.15 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.50 7.68 -51.93 -0.40 0.10 16 40 H 0.40 2.50 8.70 -40.82 -0.36 2.14 16 41 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.03 0.31 7.85 -51.93 -0.41 -0.09 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.35 5.89 8.43 -39.29 -0.33 5.55 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 49 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 51 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 LS Contribution 415.15 15.07 6.26 6.26 Total: -1.00 -34.41 415.15 -10.31 -44.72 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -8.85 Total: 12.92 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.45 Total: 5.29 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -1.42 Total: -61.79 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.18 Total: -23.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.41 -10.31 -44.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700637609.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.570 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds