Wall clock time and date at job start Tue Mar 31 2020 20:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48806 * 111.18301 * 2 1 4 4 C 1.54945 * 103.34820 * 159.50525 * 3 2 1 5 5 C 1.54599 * 102.91970 * 322.69157 * 4 3 2 6 6 C 1.47899 * 110.99777 * 117.33530 * 2 1 3 7 7 H 1.09000 * 109.92188 * 333.70902 * 6 2 1 8 8 C 1.50706 * 109.91807 * 94.80200 * 6 2 1 9 9 O 1.21283 * 119.99503 * 18.19538 * 8 6 2 10 10 N 1.34773 * 120.00081 * 197.92265 * 8 6 2 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 6 12 12 H 1.09001 * 112.84880 * 23.79516 * 11 10 8 13 13 C 1.53773 * 113.61628 * 154.99674 * 11 10 8 14 14 C 1.53782 * 87.08277 * 89.11500 * 13 11 10 15 15 H 1.09002 * 113.61249 * 270.88538 * 14 13 11 16 16 C 1.52997 * 113.61802 * 140.06576 * 14 13 11 17 17 N 1.46891 * 109.47263 * 175.00257 * 16 14 13 18 18 C 1.46905 * 111.00006 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47077 * 179.97438 * 18 17 16 20 20 O 1.21299 * 120.00048 * 359.97438 * 19 18 17 21 21 N 1.34769 * 119.99893 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00133 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00040 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00150 * 179.97438 * 22 21 19 25 25 N 1.31407 * 119.99901 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00013 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47241 * 60.00158 * 26 24 22 28 28 H 1.48496 * 109.46967 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47204 * 299.99645 * 26 24 22 30 30 C 1.53774 * 113.61016 * 252.49438 * 11 10 8 31 31 H 1.08996 * 109.47324 * 302.66516 * 1 2 3 32 32 H 1.09002 * 109.47134 * 62.66096 * 1 2 3 33 33 H 1.08997 * 109.47303 * 182.66356 * 1 2 3 34 34 H 1.08995 * 110.52303 * 41.07774 * 3 2 1 35 35 H 1.09000 * 110.70251 * 278.01861 * 3 2 1 36 36 H 1.08994 * 110.72463 * 204.33030 * 4 3 2 37 37 H 1.08995 * 110.87444 * 81.11632 * 4 3 2 38 38 H 1.08999 * 110.30468 * 263.04279 * 5 4 3 39 39 H 1.08993 * 110.31167 * 140.87562 * 5 4 3 40 40 H 0.96998 * 120.00525 * 359.97438 * 10 8 6 41 41 H 1.09002 * 113.61356 * 203.66296 * 13 11 10 42 42 H 1.09004 * 113.61557 * 334.48131 * 13 11 10 43 43 H 1.09005 * 109.46842 * 295.00321 * 16 14 13 44 44 H 1.09000 * 109.47028 * 54.99811 * 16 14 13 45 45 H 1.00897 * 111.00570 * 56.04207 * 17 16 14 46 46 H 1.08990 * 109.47016 * 299.99934 * 18 17 16 47 47 H 1.08998 * 109.46971 * 59.99717 * 18 17 16 48 48 H 0.97006 * 120.00463 * 359.97438 * 21 19 18 49 49 H 0.97002 * 120.00306 * 179.97438 * 25 24 22 50 50 H 1.09001 * 113.61784 * 25.43572 * 30 11 10 51 51 H 1.09005 * 113.61183 * 156.33104 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3875 0.0000 4 6 3.4527 1.2108 0.5278 5 6 3.2974 0.1059 1.5980 6 6 1.9990 -0.6340 1.2266 7 1 1.2743 -0.5412 2.0355 8 6 2.2937 -2.0889 0.9663 9 8 2.4078 -2.4901 -0.1726 10 7 2.4359 -2.9430 1.9991 11 6 2.7229 -4.3572 1.7460 12 1 3.1953 -4.5266 0.7784 13 6 3.4387 -5.0587 2.9123 14 6 2.0430 -5.3866 3.4685 15 1 1.6436 -4.6158 4.1277 16 6 1.9349 -6.7919 4.0637 17 7 0.6091 -6.9654 4.6719 18 6 0.4687 -8.3067 5.2545 19 6 -0.9006 -8.4469 5.8682 20 8 -1.6824 -7.5205 5.8249 21 7 -1.2561 -9.6013 6.4659 22 6 -2.5016 -9.7287 7.0246 23 1 -3.1977 -8.9039 6.9861 24 6 -2.8683 -10.9191 7.6405 25 7 -2.0215 -11.9229 7.6870 26 14 -4.5650 -11.0925 8.4024 27 1 -5.6000 -10.8965 7.3557 28 1 -4.7068 -12.4482 8.9916 29 1 -4.7368 -10.0706 9.4661 30 6 1.5296 -5.2869 2.0223 31 1 -0.3634 0.5546 0.8651 32 1 -0.3633 0.4720 -0.9129 33 1 -0.3634 -1.0265 0.0478 34 1 1.4273 2.0219 0.6707 35 1 2.0133 1.7982 -1.0097 36 1 3.8148 2.1352 0.9776 37 1 4.1201 0.8842 -0.2696 38 1 3.2096 0.5495 2.5897 39 1 4.1458 -0.5774 1.5622 40 1 2.3489 -2.6213 2.9101 41 1 4.0061 -5.9390 2.6101 42 1 4.0134 -4.3807 3.5432 43 1 2.0727 -7.5319 3.2754 44 1 2.7040 -6.9242 4.8247 45 1 -0.1228 -6.7843 4.0015 46 1 0.5961 -9.0568 4.4743 47 1 1.2276 -8.4499 6.0237 48 1 -0.6307 -10.3421 6.5009 49 1 -2.2773 -12.7538 8.1172 50 1 0.5619 -4.7928 1.9356 51 1 1.5751 -6.2295 1.4769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700637609.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:03 Heat of formation + Delta-G solvation = -70.591914 kcal Electronic energy + Delta-G solvation = -28618.951367 eV Core-core repulsion = 24552.532243 eV Total energy + Delta-G solvation = -4066.419124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.50822 -40.32051 -39.96447 -38.53878 -36.52025 -35.76786 -34.22058 -33.26548 -33.10383 -30.64421 -29.53881 -27.27796 -26.67149 -26.62466 -25.36329 -23.75054 -22.73492 -22.11962 -21.13282 -21.08156 -20.13947 -19.85910 -18.44984 -17.86348 -17.18846 -17.09886 -16.88019 -16.49781 -16.26636 -15.98209 -15.70124 -15.48064 -15.32644 -15.13037 -14.91021 -14.65002 -14.57654 -14.27525 -14.11120 -13.69596 -13.49724 -13.44426 -13.35279 -13.09597 -12.95920 -12.83303 -12.60866 -12.50321 -12.43956 -12.32674 -12.12912 -12.02698 -11.84116 -11.71041 -11.50860 -11.42141 -11.07152 -10.78035 -10.34550 -10.02288 -10.00865 -9.42558 -9.30533 -8.46938 -5.95975 1.39622 1.41494 1.52518 1.62336 2.04546 2.04876 2.29021 2.93480 3.06353 3.20212 3.49825 3.54652 3.59036 3.61483 3.76786 3.90514 3.92087 3.98562 4.05645 4.24903 4.33097 4.38738 4.44253 4.45548 4.50486 4.55783 4.57196 4.69320 4.73440 4.79855 4.82040 4.84189 4.88831 4.91329 4.93323 4.98470 5.07784 5.09234 5.19913 5.23151 5.32221 5.40149 5.66694 5.78325 5.90608 5.96861 6.13218 6.42133 6.59783 6.60638 7.11940 7.31339 7.55714 8.11121 8.70132 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.001613 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.641609 B =17359.551635 C =18182.191173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.035 3.965 4 C -0.121 4.121 5 C -0.115 4.115 6 C 0.047 3.953 7 H 0.091 0.909 8 C 0.519 3.481 9 O -0.567 6.567 10 N -0.703 5.703 11 C 0.120 3.880 12 H 0.084 0.916 13 C -0.118 4.118 14 C -0.099 4.099 15 H 0.094 0.906 16 C 0.069 3.931 17 N -0.683 5.683 18 C 0.064 3.936 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.994 3.006 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.272 1.272 30 C -0.153 4.153 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.413 0.587 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.039 0.961 44 H 0.082 0.918 45 H 0.341 0.659 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.053 0.947 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.705 23.063 -11.485 30.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.092 4.092 4 C -0.159 4.159 5 C -0.154 4.154 6 C -0.066 4.066 7 H 0.109 0.891 8 C 0.305 3.695 9 O -0.444 6.444 10 N -0.356 5.356 11 C 0.014 3.986 12 H 0.102 0.898 13 C -0.157 4.157 14 C -0.118 4.118 15 H 0.112 0.888 16 C -0.059 4.059 17 N -0.314 5.314 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.197 1.197 30 C -0.192 4.192 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.250 0.750 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.057 0.943 44 H 0.101 0.899 45 H 0.159 0.841 46 H 0.082 0.918 47 H 0.123 0.877 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.588 23.192 -12.127 30.462 hybrid contribution -1.337 -0.972 0.552 1.743 sum 14.251 22.220 -11.575 28.824 Atomic orbital electron populations 1.22508 0.86804 1.01515 1.02117 1.64328 1.08917 1.16356 1.35922 1.23386 0.95468 0.88162 1.02145 1.22500 0.96093 0.99219 0.98051 1.22395 0.94453 0.97530 1.01000 1.22439 0.99822 0.90964 0.93331 0.89115 1.20976 0.75460 0.88473 0.84567 1.90671 1.50744 1.79274 1.23701 1.45638 1.72314 1.07886 1.09730 1.21750 0.96855 0.80222 0.99783 0.89769 1.23254 0.95674 1.01077 0.95679 1.22532 0.97342 0.96991 0.94928 0.88804 1.22068 0.90090 0.96198 0.97565 1.60124 1.05313 1.26410 1.39591 1.21543 0.93890 0.91601 0.99798 1.20933 0.90656 0.82817 0.83232 1.90485 1.55416 1.40935 1.64290 1.41932 1.14993 1.13681 1.50385 1.19643 0.92470 1.00185 1.34346 0.90358 1.26042 1.03283 0.94351 0.97529 1.69663 1.37264 1.04595 1.44487 0.84983 0.77208 0.77724 0.78381 1.19766 1.19407 1.19706 1.23535 0.98223 1.00169 0.97225 0.93607 0.90290 0.93108 0.91842 0.89581 0.88119 0.91823 0.87618 0.91091 0.75042 0.87500 0.89103 0.94326 0.89924 0.84132 0.91835 0.87677 0.76948 0.91267 0.92801 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.41 127.69 1.20 1.50 16 2 N -0.53 -9.49 4.77 -887.67 -4.23 -13.72 16 3 C 0.04 0.41 6.58 86.60 0.57 0.98 16 4 C -0.12 -1.18 7.07 31.80 0.22 -0.95 16 5 C -0.12 -1.16 6.56 31.47 0.21 -0.95 16 6 C 0.05 0.71 2.87 44.31 0.13 0.84 16 7 H 0.09 1.07 7.73 -2.39 -0.02 1.05 16 8 C 0.52 11.02 6.86 87.66 0.60 11.62 16 9 O -0.57 -17.62 16.16 -3.04 -0.05 -17.67 16 10 N -0.70 -11.38 5.26 -440.04 -2.32 -13.70 16 11 C 0.12 2.11 4.33 45.51 0.20 2.30 16 12 H 0.08 1.80 7.46 -2.39 -0.02 1.79 16 13 C -0.12 -1.53 7.39 31.12 0.23 -1.30 16 14 C -0.10 -1.75 3.77 -10.27 -0.04 -1.79 16 15 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 16 C 0.07 1.47 5.52 86.30 0.48 1.95 16 17 N -0.68 -21.12 6.13 -517.95 -3.17 -24.29 16 18 C 0.06 2.19 6.17 85.56 0.53 2.72 16 19 C 0.44 20.93 7.82 87.66 0.69 21.62 16 20 O -0.62 -35.01 15.78 -3.09 -0.05 -35.06 16 21 N -0.57 -29.61 5.29 -306.98 -1.62 -31.23 16 22 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 23 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 26 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 30 C -0.15 -3.00 7.43 31.12 0.23 -2.76 16 31 H 0.05 0.55 8.01 -2.39 -0.02 0.53 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.54 7.97 -2.39 -0.02 0.53 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 0.82 7.68 -2.39 -0.02 0.80 16 40 H 0.41 4.51 8.70 -92.71 -0.81 3.70 16 41 H 0.11 1.18 8.10 -2.39 -0.02 1.16 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.04 0.76 7.85 -2.38 -0.02 0.74 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.34 11.42 8.43 -89.70 -0.76 10.67 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 48 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 49 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 50 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.09 1.73 7.90 -2.38 -0.02 1.71 16 Total: -1.00 -76.32 415.15 -3.96 -80.28 By element: Atomic # 1 Polarization: 43.95 SS G_CDS: -1.35 Total: 42.61 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.52 Total: 17.11 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -11.06 Total: -132.31 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.10 Total: -52.73 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -76.32 -3.96 -80.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700637609.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.685 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds