Wall clock time and date at job start Tue Mar 31 2020 21:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47529 * 2 1 4 4 C 1.50701 * 109.47283 * 240.00046 * 2 1 3 5 5 O 1.21288 * 119.99889 * 258.59716 * 4 2 1 6 6 N 1.34773 * 120.00184 * 78.32019 * 4 2 1 7 7 C 1.46499 * 119.99840 * 356.81089 * 6 4 2 8 8 C 1.46494 * 119.99997 * 176.81748 * 6 4 2 9 9 C 1.52994 * 109.47648 * 89.99832 * 8 6 4 10 10 H 1.09007 * 109.47110 * 295.00139 * 9 8 6 11 11 C 1.53005 * 109.47473 * 174.99930 * 9 8 6 12 12 N 1.46503 * 109.47259 * 54.99541 * 9 8 6 13 13 C 1.36930 * 120.00289 * 205.00010 * 12 9 8 14 14 H 1.08004 * 120.00066 * 0.02562 * 13 12 9 15 15 C 1.38812 * 120.00114 * 180.02562 * 13 12 9 16 16 N 1.31617 * 120.00247 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00268 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47074 * 89.99547 * 17 15 13 19 19 H 1.48497 * 109.47203 * 209.99573 * 17 15 13 20 20 H 1.48499 * 109.47006 * 330.00031 * 17 15 13 21 21 N 1.46495 * 109.47115 * 119.99895 * 2 1 3 22 22 N 1.29024 * 126.44025 * 59.69115 * 21 2 1 23 23 N 1.28739 * 108.80934 * 179.83301 * 22 21 2 24 24 N 1.28838 * 109.39871 * 0.43725 * 23 22 21 25 25 C 1.31079 * 107.99244 * 359.73383 * 24 23 22 26 26 C 1.50696 * 126.66143 * 179.97438 * 25 24 23 27 27 C 1.52998 * 109.47105 * 240.04102 * 26 25 24 28 28 C 1.52998 * 109.47147 * 0.03887 * 26 25 24 29 29 C 1.52998 * 109.47042 * 120.04074 * 26 25 24 30 30 H 1.09002 * 109.47432 * 186.91186 * 1 2 3 31 31 H 1.09004 * 109.47297 * 306.91389 * 1 2 3 32 32 H 1.09002 * 109.47429 * 66.91034 * 1 2 3 33 33 H 1.09000 * 109.47105 * 84.15159 * 7 6 4 34 34 H 1.09004 * 109.47021 * 204.15266 * 7 6 4 35 35 H 1.09000 * 109.47418 * 324.14944 * 7 6 4 36 36 H 1.09009 * 109.47193 * 210.00062 * 8 6 4 37 37 H 1.09001 * 109.47523 * 329.99391 * 8 6 4 38 38 H 1.08996 * 109.46823 * 299.99867 * 11 9 8 39 39 H 1.08994 * 109.46686 * 59.99901 * 11 9 8 40 40 H 1.08995 * 109.47075 * 179.97438 * 11 9 8 41 41 H 0.97004 * 119.99520 * 25.00634 * 12 9 8 42 42 H 0.97002 * 120.00470 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.47147 * 60.00019 * 27 26 25 44 44 H 1.08998 * 109.47162 * 179.97438 * 27 26 25 45 45 H 1.09005 * 109.47416 * 300.00372 * 27 26 25 46 46 H 1.09006 * 109.46786 * 60.00223 * 28 26 25 47 47 H 1.09005 * 109.46967 * 179.97438 * 28 26 25 48 48 H 1.08997 * 109.47709 * 299.99883 * 28 26 25 49 49 H 1.09005 * 109.46689 * 60.00112 * 29 26 25 50 50 H 1.08998 * 109.46994 * 179.97438 * 29 26 25 51 51 H 1.08997 * 109.47563 * 300.00033 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4303 -1.8534 -1.1508 6 7 2.0342 -0.0776 -2.4204 7 6 1.4835 1.2754 -2.5314 8 6 2.5869 -0.7428 -3.6029 9 6 1.4804 -1.5273 -4.3107 10 1 1.1341 -2.3323 -3.6624 11 6 2.0268 -2.1192 -5.6114 12 7 0.3629 -0.6298 -4.6141 13 6 -0.9011 -1.1356 -4.7611 14 1 -1.0742 -2.1962 -4.6530 15 6 -1.9598 -0.2853 -5.0491 16 7 -1.7487 1.0071 -5.1814 17 14 -3.6842 -0.9753 -5.2491 18 1 -4.3710 -0.9805 -3.9324 19 1 -4.4478 -0.1307 -6.2023 20 1 -3.6046 -2.3631 -5.7712 21 7 2.0183 -0.6906 1.1961 22 7 1.7799 -1.9152 1.5251 23 7 2.3772 -2.1702 2.6366 24 7 2.9976 -1.1158 3.0408 25 6 2.7953 -0.1650 2.1615 26 6 3.3285 1.2432 2.2203 27 6 2.1599 2.2306 2.2415 28 6 4.1672 1.4185 3.4879 29 6 4.1997 1.5104 0.9913 30 1 -0.3634 -1.0202 0.1237 31 1 -0.3634 0.6172 0.8217 32 1 -0.3634 0.4030 -0.9453 33 1 2.2445 2.0019 -2.2468 34 1 1.1733 1.4581 -3.5602 35 1 0.6228 1.3728 -1.8697 36 1 2.9943 0.0051 -4.2833 37 1 3.3791 -1.4266 -3.2981 38 1 2.3730 -1.3142 -6.2596 39 1 2.8582 -2.7869 -5.3856 40 1 1.2386 -2.6785 -6.1154 41 1 0.5184 0.3228 -4.7109 42 1 -2.4886 1.6013 -5.3823 43 1 1.5392 2.0402 3.1170 44 1 2.5456 3.2491 2.2844 45 1 1.5623 2.1057 1.3384 46 1 4.9997 0.7150 3.4727 47 1 4.5533 2.4370 3.5301 48 1 3.5466 1.2282 4.3635 49 1 3.6021 1.3855 0.0883 50 1 4.5850 2.5291 1.0336 51 1 5.0322 0.8070 0.9761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700752711.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:51 Heat of formation + Delta-G solvation = 98.456529 kcal Electronic energy + Delta-G solvation = -32011.169572 eV Core-core repulsion = 27984.373690 eV Total energy + Delta-G solvation = -4026.795882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.20658 -40.15998 -37.75652 -36.72320 -35.68483 -34.50644 -32.40611 -31.78218 -31.10551 -28.93930 -27.88291 -27.82222 -27.04046 -26.35529 -25.12281 -23.91601 -23.76882 -22.63915 -20.64532 -20.15277 -19.29481 -17.50318 -17.37317 -17.29799 -16.62565 -15.96801 -15.66297 -15.51471 -14.73673 -14.57442 -14.51175 -14.04605 -13.88604 -13.69178 -13.47263 -13.09880 -12.84907 -12.81866 -12.63670 -12.47060 -12.39493 -12.33428 -12.21905 -12.14335 -12.02363 -11.91460 -11.72211 -11.54416 -11.53109 -11.37473 -11.22303 -10.99833 -10.93012 -10.90796 -10.78696 -10.47743 -10.15175 -10.05510 -9.74868 -9.61210 -9.02677 -8.44131 -7.05985 -5.88294 -3.15133 1.27790 1.77675 2.31852 2.48394 3.05708 3.36517 3.43414 3.44959 3.60865 3.96804 4.13345 4.22107 4.38082 4.44962 4.51344 4.61021 4.86176 5.05422 5.16090 5.22470 5.26108 5.26398 5.32154 5.36355 5.39566 5.40446 5.44420 5.48419 5.49006 5.55340 5.58877 5.65649 5.73282 5.78036 5.79236 5.90850 5.97077 6.01007 6.08022 6.16751 6.20065 6.21069 6.56217 6.59497 6.77913 7.02924 7.38559 7.64385 8.10595 8.31549 8.71445 9.43228 9.97168 10.33569 11.34464 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.003432 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.742105 B = 8157.336247 C = 8425.645568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 H 0.138 0.862 4 C 0.506 3.494 5 O -0.514 6.514 6 N -0.585 5.585 7 C 0.066 3.934 8 C 0.112 3.888 9 C 0.154 3.846 10 H 0.054 0.946 11 C -0.162 4.162 12 N -0.720 5.720 13 C -0.231 4.231 14 H 0.068 0.932 15 C -0.012 4.012 16 N -0.936 5.936 17 Si 0.903 3.097 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.283 1.283 21 N -0.286 5.286 22 N -0.055 5.055 23 N -0.088 5.088 24 N -0.303 5.303 25 C 0.186 3.814 26 C 0.014 3.986 27 C -0.153 4.153 28 C -0.130 4.130 29 C -0.152 4.152 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.380 0.620 42 H 0.254 0.746 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.081 0.919 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.386 8.793 11.701 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 H 0.155 0.845 4 C 0.290 3.710 5 O -0.389 6.389 6 N -0.317 5.317 7 C -0.076 4.076 8 C -0.011 4.011 9 C 0.043 3.957 10 H 0.072 0.928 11 C -0.223 4.223 12 N -0.363 5.363 13 C -0.362 4.362 14 H 0.086 0.914 15 C -0.207 4.207 16 N -0.586 5.586 17 Si 0.734 3.266 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 N -0.088 5.088 22 N -0.041 5.041 23 N -0.081 5.081 24 N -0.151 5.151 25 C -0.092 4.092 26 C 0.011 3.989 27 C -0.211 4.211 28 C -0.188 4.188 29 C -0.210 4.210 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.215 0.785 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.100 0.900 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.290 6.715 12.241 17.956 hybrid contribution -1.134 0.783 -0.914 1.653 sum 10.157 7.498 11.328 16.962 Atomic orbital electron populations 1.22285 0.88837 1.05859 1.05526 1.21983 0.98988 0.96552 0.81016 0.84474 1.19940 0.79809 0.86997 0.84246 1.90802 1.46606 1.16280 1.85196 1.47501 1.59721 1.16898 1.07602 1.22164 0.97824 0.81341 1.06317 1.21941 0.96694 0.97126 0.85352 1.20658 0.88193 0.93260 0.93573 0.92830 1.22364 0.99974 1.00213 0.99753 1.42446 1.03018 1.05892 1.84955 1.19234 0.84588 0.92744 1.39644 0.91369 1.24633 0.97745 0.95460 1.02882 1.69613 1.30853 1.01868 1.56219 0.86253 0.84936 0.77959 0.77460 1.21807 1.21823 1.20840 1.48149 1.33759 1.08841 1.18090 1.79045 1.18586 0.96262 1.10191 1.78636 1.07722 1.17990 1.03802 1.74928 1.19950 0.96629 1.23591 1.25999 0.96313 0.99610 0.87315 1.19230 0.96326 0.84290 0.99063 1.22119 0.96937 0.99125 1.02894 1.21737 0.99801 1.02260 0.95009 1.22096 0.99860 1.03524 0.95492 0.89538 0.90466 0.87310 0.93103 0.88214 0.90846 0.90412 0.90119 0.93423 0.94288 0.92432 0.78454 0.93592 0.91378 0.90048 0.92176 0.91435 0.91269 0.91379 0.92529 0.90017 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.09 37.15 0.34 -1.75 16 2 C 0.12 1.53 1.44 -69.09 -0.10 1.43 16 3 H 0.14 1.27 3.10 -51.93 -0.16 1.11 16 4 C 0.51 8.07 6.93 -10.99 -0.08 7.99 16 5 O -0.51 -10.28 15.37 5.55 0.09 -10.19 16 6 N -0.59 -8.56 2.73 -181.57 -0.50 -9.05 16 7 C 0.07 0.81 9.25 59.85 0.55 1.37 16 8 C 0.11 1.72 5.00 -4.05 -0.02 1.70 16 9 C 0.15 2.92 3.20 -67.93 -0.22 2.70 16 10 H 0.05 1.17 8.08 -51.92 -0.42 0.75 16 11 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 12 N -0.72 -16.03 4.57 -53.42 -0.24 -16.27 16 13 C -0.23 -5.97 9.93 -15.06 -0.15 -6.11 16 14 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.94 -25.40 13.06 55.49 0.72 -24.67 16 17 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 N -0.29 -4.20 2.90 -52.93 -0.15 -4.36 16 22 N -0.06 -1.00 12.09 60.35 0.73 -0.27 16 23 N -0.09 -1.61 13.43 60.35 0.81 -0.80 16 24 N -0.30 -4.80 11.71 32.70 0.38 -4.42 16 25 C 0.19 2.44 6.40 -155.42 -1.00 1.44 16 26 C 0.01 0.12 0.75 -155.67 -0.12 0.01 16 27 C -0.15 -0.99 8.31 37.16 0.31 -0.68 16 28 C -0.13 -0.97 8.00 37.16 0.30 -0.67 16 29 C -0.15 -1.14 8.31 37.16 0.31 -0.83 16 30 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.11 1.42 5.89 -51.93 -0.31 1.11 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 1.47 5.78 -51.93 -0.30 1.17 16 35 H 0.07 0.86 4.80 -51.93 -0.25 0.61 16 36 H 0.08 1.05 8.07 -51.92 -0.42 0.63 16 37 H 0.08 1.24 7.47 -51.93 -0.39 0.86 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.38 8.54 5.41 -40.82 -0.22 8.32 16 42 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.38 5.58 -51.93 -0.29 0.09 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.45 5.58 -51.93 -0.29 0.16 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 400.00 15.07 6.03 6.03 Total: -1.00 -33.10 400.00 -4.85 -37.95 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.08 Total: 5.91 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 0.39 Total: 3.73 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 1.75 Total: -59.85 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.10 -4.85 -37.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700752711.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.402 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds