Wall clock time and date at job start Tue Mar 31 2020 21:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47529 * 2 1 4 4 C 1.50701 * 109.47283 * 240.00046 * 2 1 3 5 5 O 1.21288 * 119.99889 * 258.59716 * 4 2 1 6 6 N 1.34773 * 120.00184 * 78.32019 * 4 2 1 7 7 C 1.46499 * 119.99840 * 356.81089 * 6 4 2 8 8 C 1.46494 * 119.99997 * 176.81748 * 6 4 2 9 9 C 1.52994 * 109.47648 * 89.99832 * 8 6 4 10 10 H 1.09007 * 109.47110 * 295.00139 * 9 8 6 11 11 C 1.53005 * 109.47473 * 174.99930 * 9 8 6 12 12 N 1.46503 * 109.47259 * 54.99541 * 9 8 6 13 13 C 1.36930 * 120.00289 * 205.00010 * 12 9 8 14 14 H 1.08004 * 120.00066 * 0.02562 * 13 12 9 15 15 C 1.38812 * 120.00114 * 180.02562 * 13 12 9 16 16 N 1.31617 * 120.00247 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00268 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47074 * 89.99547 * 17 15 13 19 19 H 1.48497 * 109.47203 * 209.99573 * 17 15 13 20 20 H 1.48499 * 109.47006 * 330.00031 * 17 15 13 21 21 N 1.46495 * 109.47115 * 119.99895 * 2 1 3 22 22 N 1.29024 * 126.44025 * 59.69115 * 21 2 1 23 23 N 1.28739 * 108.80934 * 179.83301 * 22 21 2 24 24 N 1.28838 * 109.39871 * 0.43725 * 23 22 21 25 25 C 1.31079 * 107.99244 * 359.73383 * 24 23 22 26 26 C 1.50696 * 126.66143 * 179.97438 * 25 24 23 27 27 C 1.52998 * 109.47105 * 240.04102 * 26 25 24 28 28 C 1.52998 * 109.47147 * 0.03887 * 26 25 24 29 29 C 1.52998 * 109.47042 * 120.04074 * 26 25 24 30 30 H 1.09002 * 109.47432 * 186.91186 * 1 2 3 31 31 H 1.09004 * 109.47297 * 306.91389 * 1 2 3 32 32 H 1.09002 * 109.47429 * 66.91034 * 1 2 3 33 33 H 1.09000 * 109.47105 * 84.15159 * 7 6 4 34 34 H 1.09004 * 109.47021 * 204.15266 * 7 6 4 35 35 H 1.09000 * 109.47418 * 324.14944 * 7 6 4 36 36 H 1.09009 * 109.47193 * 210.00062 * 8 6 4 37 37 H 1.09001 * 109.47523 * 329.99391 * 8 6 4 38 38 H 1.08996 * 109.46823 * 299.99867 * 11 9 8 39 39 H 1.08994 * 109.46686 * 59.99901 * 11 9 8 40 40 H 1.08995 * 109.47075 * 179.97438 * 11 9 8 41 41 H 0.97004 * 119.99520 * 25.00634 * 12 9 8 42 42 H 0.97002 * 120.00470 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.47147 * 60.00019 * 27 26 25 44 44 H 1.08998 * 109.47162 * 179.97438 * 27 26 25 45 45 H 1.09005 * 109.47416 * 300.00372 * 27 26 25 46 46 H 1.09006 * 109.46786 * 60.00223 * 28 26 25 47 47 H 1.09005 * 109.46967 * 179.97438 * 28 26 25 48 48 H 1.08997 * 109.47709 * 299.99883 * 28 26 25 49 49 H 1.09005 * 109.46689 * 60.00112 * 29 26 25 50 50 H 1.08998 * 109.46994 * 179.97438 * 29 26 25 51 51 H 1.08997 * 109.47563 * 300.00033 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4303 -1.8534 -1.1508 6 7 2.0342 -0.0776 -2.4204 7 6 1.4835 1.2754 -2.5314 8 6 2.5869 -0.7428 -3.6029 9 6 1.4804 -1.5273 -4.3107 10 1 1.1341 -2.3323 -3.6624 11 6 2.0268 -2.1192 -5.6114 12 7 0.3629 -0.6298 -4.6141 13 6 -0.9011 -1.1356 -4.7611 14 1 -1.0742 -2.1962 -4.6530 15 6 -1.9598 -0.2853 -5.0491 16 7 -1.7487 1.0071 -5.1814 17 14 -3.6842 -0.9753 -5.2491 18 1 -4.3710 -0.9805 -3.9324 19 1 -4.4478 -0.1307 -6.2023 20 1 -3.6046 -2.3631 -5.7712 21 7 2.0183 -0.6906 1.1961 22 7 1.7799 -1.9152 1.5251 23 7 2.3772 -2.1702 2.6366 24 7 2.9976 -1.1158 3.0408 25 6 2.7953 -0.1650 2.1615 26 6 3.3285 1.2432 2.2203 27 6 2.1599 2.2306 2.2415 28 6 4.1672 1.4185 3.4879 29 6 4.1997 1.5104 0.9913 30 1 -0.3634 -1.0202 0.1237 31 1 -0.3634 0.6172 0.8217 32 1 -0.3634 0.4030 -0.9453 33 1 2.2445 2.0019 -2.2468 34 1 1.1733 1.4581 -3.5602 35 1 0.6228 1.3728 -1.8697 36 1 2.9943 0.0051 -4.2833 37 1 3.3791 -1.4266 -3.2981 38 1 2.3730 -1.3142 -6.2596 39 1 2.8582 -2.7869 -5.3856 40 1 1.2386 -2.6785 -6.1154 41 1 0.5184 0.3228 -4.7109 42 1 -2.4886 1.6013 -5.3823 43 1 1.5392 2.0402 3.1170 44 1 2.5456 3.2491 2.2844 45 1 1.5623 2.1057 1.3384 46 1 4.9997 0.7150 3.4727 47 1 4.5533 2.4370 3.5301 48 1 3.5466 1.2282 4.3635 49 1 3.6021 1.3855 0.0883 50 1 4.5850 2.5291 1.0336 51 1 5.0322 0.8070 0.9761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700752711.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:50 Heat of formation + Delta-G solvation = 76.312277 kcal Electronic energy + Delta-G solvation = -32012.129819 eV Core-core repulsion = 27984.373690 eV Total energy + Delta-G solvation = -4027.756129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -45.37399 -41.39951 -38.55674 -38.09766 -36.86296 -35.98884 -34.08524 -33.03206 -32.25496 -30.66236 -28.50213 -28.34188 -28.21009 -27.54542 -26.29436 -25.61880 -24.94531 -23.84423 -21.98604 -21.14956 -20.52922 -19.28312 -18.58804 -18.49135 -17.79232 -16.98062 -16.82732 -16.66566 -16.41847 -15.75481 -15.46050 -15.19954 -15.15579 -14.91452 -14.76322 -14.16092 -13.93978 -13.82592 -13.72908 -13.64568 -13.55871 -13.33536 -13.18260 -13.09259 -13.01667 -12.93783 -12.81944 -12.73457 -12.69135 -12.67689 -12.51166 -12.27101 -12.19322 -12.16425 -12.02212 -11.87199 -11.78837 -11.62501 -11.19879 -10.99479 -10.82025 -9.69698 -8.94058 -7.91934 -5.16225 0.14464 0.71376 1.11455 1.26142 1.45592 1.48761 1.54479 1.90821 2.56741 2.76471 2.94615 3.15817 3.33832 3.42132 3.43659 3.80640 3.85574 3.94282 4.02913 4.06017 4.14475 4.23303 4.33448 4.35928 4.42534 4.55505 4.59636 4.61185 4.65916 4.69249 4.71664 4.79603 4.82266 4.85878 4.90076 4.93558 4.95484 5.03079 5.06114 5.19758 5.23415 5.25020 5.29344 5.31565 5.40413 5.54740 5.59404 6.20086 6.32790 6.89120 7.40680 7.50135 8.10382 8.42426 9.29866 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.003432 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.742105 B = 8157.336247 C = 8425.645568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.127 3.873 3 H 0.180 0.820 4 C 0.500 3.500 5 O -0.564 6.564 6 N -0.582 5.582 7 C 0.061 3.939 8 C 0.118 3.882 9 C 0.153 3.847 10 H 0.017 0.983 11 C -0.154 4.154 12 N -0.720 5.720 13 C -0.234 4.234 14 H 0.053 0.947 15 C -0.053 4.053 16 N -0.952 5.952 17 Si 0.950 3.050 18 H -0.290 1.290 19 H -0.293 1.293 20 H -0.285 1.285 21 N -0.287 5.287 22 N -0.092 5.092 23 N -0.115 5.115 24 N -0.325 5.325 25 C 0.201 3.799 26 C 0.012 3.988 27 C -0.153 4.153 28 C -0.129 4.129 29 C -0.151 4.151 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.381 0.619 42 H 0.252 0.748 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.103 0.897 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.118 0.882 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.411 12.076 11.869 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 H 0.197 0.803 4 C 0.285 3.715 5 O -0.442 6.442 6 N -0.312 5.312 7 C -0.081 4.081 8 C -0.005 4.005 9 C 0.043 3.957 10 H 0.035 0.965 11 C -0.214 4.214 12 N -0.363 5.363 13 C -0.366 4.366 14 H 0.071 0.929 15 C -0.246 4.246 16 N -0.602 5.602 17 Si 0.781 3.219 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.211 1.211 21 N -0.089 5.089 22 N -0.078 5.078 23 N -0.108 5.108 24 N -0.173 5.173 25 C -0.077 4.077 26 C 0.008 3.992 27 C -0.211 4.211 28 C -0.187 4.187 29 C -0.209 4.209 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.217 0.783 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.137 0.863 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.323 10.012 12.400 20.146 hybrid contribution -1.396 -0.235 -0.972 1.717 sum 10.927 9.776 11.429 18.590 Atomic orbital electron populations 1.22264 0.88697 1.04575 1.06601 1.22179 0.98970 0.97640 0.79005 0.80341 1.20483 0.79054 0.86559 0.85399 1.90783 1.48896 1.18478 1.86049 1.47607 1.58991 1.17684 1.06967 1.22368 0.99686 0.80804 1.05215 1.21836 0.95156 0.97683 0.85868 1.20733 0.88444 0.92416 0.94103 0.96508 1.22224 0.99920 1.00700 0.98571 1.42437 1.02734 1.06296 1.84872 1.19331 0.86297 0.92149 1.38866 0.92874 1.25107 1.00038 0.95875 1.03621 1.69692 1.31184 1.02236 1.57092 0.85500 0.82078 0.77175 0.77109 1.21776 1.21918 1.21092 1.48254 1.33874 1.08090 1.18678 1.78988 1.19859 0.98303 1.10625 1.78588 1.08608 1.19350 1.04300 1.74859 1.20645 0.96927 1.24849 1.27006 0.94214 1.00866 0.85650 1.19654 0.97531 0.81704 1.00266 1.22190 0.95971 1.00053 1.02844 1.21766 0.98944 1.03905 0.94038 1.22150 0.98996 1.05296 0.94456 0.92627 0.87287 0.87640 0.88177 0.90430 0.90339 0.87540 0.90059 0.92153 0.91905 0.94751 0.78304 0.93918 0.91937 0.86673 0.91796 0.92985 0.87835 0.92306 0.92776 0.86339 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.09 71.98 0.65 -3.29 16 2 C 0.13 3.05 1.44 44.24 0.06 3.12 16 3 H 0.18 2.68 3.10 -2.38 -0.01 2.67 16 4 C 0.50 15.69 6.93 87.66 0.61 16.30 16 5 O -0.56 -23.18 15.37 -3.05 -0.05 -23.23 16 6 N -0.58 -16.16 2.73 -846.76 -2.31 -18.47 16 7 C 0.06 1.31 9.25 127.77 1.18 2.50 16 8 C 0.12 3.48 5.00 86.38 0.43 3.91 16 9 C 0.15 5.81 3.20 44.99 0.14 5.95 16 10 H 0.02 0.76 8.08 -2.38 -0.02 0.74 16 11 C -0.15 -5.23 9.49 71.98 0.68 -4.54 16 12 N -0.72 -32.03 4.57 -322.93 -1.47 -33.50 16 13 C -0.23 -12.23 9.93 84.03 0.83 -11.40 16 14 H 0.05 2.89 7.83 -2.91 -0.02 2.87 16 15 C -0.05 -2.78 5.50 84.86 0.47 -2.32 16 16 N -0.95 -51.08 13.06 21.65 0.28 -50.80 16 17 Si 0.95 44.18 29.55 68.60 2.03 46.20 16 18 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 N -0.29 -8.34 2.90 -321.37 -0.93 -9.27 16 22 N -0.09 -3.45 12.09 37.02 0.45 -3.00 16 23 N -0.12 -4.36 13.43 37.01 0.50 -3.87 16 24 N -0.32 -10.44 11.71 -50.45 -0.59 -11.03 16 25 C 0.20 5.08 6.40 138.13 0.88 5.97 16 26 C 0.01 0.17 0.75 -52.93 -0.04 0.13 16 27 C -0.15 -1.32 8.31 71.98 0.60 -0.73 16 28 C -0.13 -1.58 8.00 71.98 0.58 -1.01 16 29 C -0.15 -1.70 8.31 71.98 0.60 -1.10 16 30 H 0.05 1.70 8.06 -2.39 -0.02 1.68 16 31 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.11 2.63 5.89 -2.39 -0.01 2.61 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 2.11 5.78 -2.38 -0.01 2.10 16 35 H 0.08 1.62 4.80 -2.39 -0.01 1.61 16 36 H 0.11 2.56 8.07 -2.38 -0.02 2.54 16 37 H 0.08 2.43 7.47 -2.39 -0.02 2.41 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.38 16.85 5.41 -92.70 -0.50 16.35 16 42 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.06 0.50 5.58 -2.38 -0.01 0.49 16 46 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.05 0.63 5.58 -2.38 -0.01 0.62 16 50 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -76.08 400.00 6.03 -70.05 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.44 Total: 23.42 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 7.68 Total: 13.49 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -4.08 Total: -129.94 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -76.08 6.03 -70.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700752711.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.365 kcal (2) G-P(sol) polarization free energy of solvation -76.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds