Wall clock time and date at job start Tue Mar 31 2020 21:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46907 * 2 1 4 4 C 1.50700 * 109.46893 * 120.00397 * 2 1 3 5 5 N 1.31069 * 126.65926 * 300.16727 * 4 2 1 6 6 N 1.28846 * 107.98705 * 180.24856 * 5 4 2 7 7 N 1.28736 * 109.39613 * 359.74923 * 6 5 4 8 8 N 1.29019 * 108.81326 * 0.02562 * 7 6 5 9 9 C 1.46496 * 126.44211 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47634 * 90.01864 * 9 8 7 11 11 O 1.21287 * 119.99595 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00570 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00280 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.46956 * 35.00871 * 13 12 10 15 15 C 1.53002 * 109.47037 * 155.00016 * 13 12 10 16 16 N 1.46501 * 109.47237 * 305.00331 * 15 13 12 17 17 C 1.36937 * 120.00070 * 179.97438 * 16 15 13 18 18 H 1.08008 * 119.99933 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00222 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00314 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00068 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47305 * 89.99588 * 21 19 17 23 23 H 1.48498 * 109.47279 * 209.99917 * 21 19 17 24 24 H 1.48506 * 109.47173 * 330.00016 * 21 19 17 25 25 C 1.52992 * 109.47337 * 275.00076 * 13 12 10 26 26 C 1.52997 * 109.47482 * 300.00145 * 25 13 12 27 27 C 1.53006 * 109.47223 * 179.97438 * 25 13 12 28 28 C 1.52999 * 109.46961 * 60.00506 * 25 13 12 29 29 H 1.09004 * 109.46812 * 300.00067 * 1 2 3 30 30 H 1.09003 * 109.46752 * 59.99331 * 1 2 3 31 31 H 1.08993 * 109.47563 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46501 * 240.00334 * 2 1 3 33 33 H 1.09001 * 109.46649 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47860 * 299.99572 * 3 2 1 35 35 H 1.09000 * 109.47267 * 60.00804 * 3 2 1 36 36 H 1.09007 * 109.46797 * 330.02164 * 9 8 7 37 37 H 1.09002 * 109.47417 * 210.02406 * 9 8 7 38 38 H 0.97000 * 119.99554 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.47029 * 65.00199 * 15 13 12 40 40 H 1.08996 * 109.47572 * 185.00142 * 15 13 12 41 41 H 0.96998 * 120.00102 * 0.02562 * 16 15 13 42 42 H 0.96996 * 120.00203 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47153 * 59.99783 * 26 25 13 44 44 H 1.09001 * 109.46832 * 299.99974 * 26 25 13 45 45 H 1.09004 * 109.47261 * 179.97438 * 26 25 13 46 46 H 1.08993 * 109.46955 * 180.02562 * 27 25 13 47 47 H 1.09000 * 109.47050 * 300.00346 * 27 25 13 48 48 H 1.09001 * 109.47002 * 60.00080 * 27 25 13 49 49 H 1.09002 * 109.46716 * 299.99630 * 28 25 13 50 50 H 1.09000 * 109.47486 * 59.99547 * 28 25 13 51 51 H 1.09001 * 109.47362 * 180.02562 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7950 -0.3803 2.4764 6 7 2.4016 -1.2270 3.2349 7 7 3.0153 -2.0917 2.5050 8 7 2.8096 -1.8089 1.2631 9 6 3.3288 -2.5422 0.1060 10 6 2.3500 -3.6183 -0.2874 11 8 1.3198 -3.7587 0.3371 12 7 2.6189 -4.4242 -1.3337 13 6 1.6676 -5.4707 -1.7157 14 1 0.6508 -5.1177 -1.5440 15 6 1.8472 -5.8069 -3.1975 16 7 1.7216 -4.5840 -3.9944 17 6 1.8470 -4.6388 -5.3569 18 1 2.0380 -5.5837 -5.8441 19 6 1.7274 -3.4803 -6.1121 20 7 1.8475 -3.5330 -7.4218 21 14 1.3963 -1.8463 -5.2697 22 1 2.6864 -1.1946 -4.9289 23 1 0.6232 -0.9665 -6.1825 24 1 0.6160 -2.0789 -4.0277 25 6 1.9218 -6.7229 -0.8742 26 6 3.3491 -7.2184 -1.1153 27 6 0.9278 -7.8157 -1.2728 28 6 1.7421 -6.3867 0.6075 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 4.2852 -2.9974 0.3637 37 1 3.4670 -1.8541 -0.7281 38 1 3.4427 -4.3117 -1.8333 39 1 2.8338 -6.2429 -3.3541 40 1 1.0820 -6.5202 -3.5036 41 1 1.5503 -3.7355 -3.5569 42 1 1.7636 -2.7235 -7.9495 43 1 4.0569 -6.4398 -0.8311 44 1 3.4770 -7.4579 -2.1710 45 1 3.5303 -8.1103 -0.5154 46 1 1.1087 -8.7076 -0.6730 47 1 -0.0889 -7.4624 -1.1006 48 1 1.0553 -8.0553 -2.3285 49 1 2.4500 -5.6080 0.8918 50 1 0.7253 -6.0337 0.7794 51 1 1.9237 -7.2787 1.2071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700994747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:37 Heat of formation + Delta-G solvation = 83.326881 kcal Electronic energy + Delta-G solvation = -31690.950850 eV Core-core repulsion = 27663.498896 eV Total energy + Delta-G solvation = -4027.451953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.29876 -40.55389 -37.97303 -36.35324 -35.45390 -34.77477 -33.69339 -31.65210 -31.45453 -29.59021 -28.12049 -27.46311 -27.31444 -26.78859 -24.56932 -24.07103 -23.28426 -21.62343 -21.22742 -20.64304 -18.94889 -18.32954 -17.97614 -17.39984 -16.46227 -16.28646 -15.90851 -15.61854 -15.08174 -14.74913 -14.37918 -14.30224 -14.10150 -13.79627 -13.51532 -13.46318 -13.26792 -12.96973 -12.90970 -12.51511 -12.44766 -12.31040 -12.13967 -12.01121 -11.90590 -11.71741 -11.60404 -11.57374 -11.46160 -11.43090 -11.37197 -11.07019 -11.03313 -10.94894 -10.74050 -10.48016 -10.20427 -10.18048 -9.95659 -9.76594 -9.11100 -9.02998 -7.42205 -5.92602 -3.29842 1.06358 1.63891 2.17345 2.22683 2.91821 3.17132 3.21495 3.30370 3.67529 3.92424 4.23443 4.27057 4.41987 4.43652 4.63634 4.69492 4.80337 4.81798 4.93158 4.96665 5.25372 5.28748 5.34914 5.38872 5.41695 5.47605 5.55855 5.56744 5.59207 5.62391 5.64851 5.70189 5.72033 5.84481 5.89896 5.93752 5.94970 5.96483 6.03200 6.10624 6.13019 6.23341 6.26801 6.37990 6.48862 6.60460 7.26089 7.81522 7.91055 8.25507 8.52328 9.03209 9.74938 9.93682 11.25520 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.005018 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.842932 B = 5578.817510 C = 8168.037224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.015 4.015 3 C -0.143 4.143 4 C 0.207 3.793 5 N -0.301 5.301 6 N -0.076 5.076 7 N -0.087 5.087 8 N -0.292 5.292 9 C 0.087 3.913 10 C 0.499 3.501 11 O -0.517 6.517 12 N -0.702 5.702 13 C 0.147 3.853 14 H 0.089 0.911 15 C 0.146 3.854 16 N -0.754 5.754 17 C -0.248 4.248 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.879 3.121 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.277 1.277 25 C -0.076 4.076 26 C -0.143 4.143 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.407 0.593 39 H 0.040 0.960 40 H 0.046 0.954 41 H 0.360 0.640 42 H 0.261 0.739 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.049 0.951 50 H 0.060 0.940 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 1.356 14.004 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.202 4.202 4 C -0.072 4.072 5 N -0.149 5.149 6 N -0.070 5.070 7 N -0.072 5.072 8 N -0.092 5.092 9 C -0.039 4.039 10 C 0.282 3.718 11 O -0.392 6.392 12 N -0.354 5.354 13 C 0.042 3.958 14 H 0.108 0.892 15 C 0.019 3.981 16 N -0.401 5.401 17 C -0.378 4.378 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.577 5.577 21 Si 0.709 3.291 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.203 1.203 25 C -0.077 4.077 26 C -0.200 4.200 27 C -0.200 4.200 28 C -0.187 4.187 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.243 0.757 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.193 0.807 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.249 0.985 15.648 16.012 hybrid contribution 0.237 1.103 -0.847 1.411 sum 3.486 2.088 14.801 15.349 Atomic orbital electron populations 1.21826 0.91613 1.03373 1.03384 1.19837 0.98070 0.96144 0.89606 1.21851 1.01200 0.93365 1.03748 1.26077 0.94413 0.88735 0.97932 1.74947 1.19807 1.21881 0.98312 1.78580 1.06862 0.99049 1.22469 1.78855 1.20355 1.20806 0.87212 1.47820 1.34624 1.20014 1.06780 1.22055 0.99362 0.96009 0.86454 1.20128 0.87458 0.82678 0.81573 1.90818 1.25871 1.70276 1.52222 1.45885 1.24729 1.33685 1.31057 1.21451 0.93333 0.86000 0.94987 0.89249 1.21101 0.99955 0.90610 0.86479 1.42689 1.88551 1.04317 1.04503 1.19030 1.41902 0.96107 0.80750 0.89085 1.24668 1.01661 0.97301 0.95174 1.69688 1.56290 1.27906 1.03830 0.86631 0.77976 0.85468 0.79030 1.21010 1.21525 1.20337 1.20895 0.96324 0.94794 0.95705 1.21927 0.95223 1.00594 1.02231 1.21897 0.98629 0.97491 1.01950 1.21879 1.02430 1.00200 0.94162 0.91075 0.90781 0.91818 0.89060 0.92370 0.90633 0.90941 0.83974 0.84283 0.75709 0.94230 0.93583 0.80676 0.92907 0.92958 0.91613 0.92901 0.92622 0.92544 0.91637 0.93211 0.92139 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 2 C -0.01 -0.15 3.26 -91.77 -0.30 -0.45 16 3 C -0.14 -1.21 9.18 37.16 0.34 -0.87 16 4 C 0.21 2.67 6.64 -155.43 -1.03 1.64 16 5 N -0.30 -4.58 12.36 32.70 0.40 -4.18 16 6 N -0.08 -1.24 13.43 60.35 0.81 -0.43 16 7 N -0.09 -1.30 13.29 60.35 0.80 -0.50 16 8 N -0.29 -3.66 2.83 -59.44 -0.17 -3.83 16 9 C 0.09 0.79 6.57 -5.20 -0.03 0.76 16 10 C 0.50 6.00 6.25 -10.99 -0.07 5.93 16 11 O -0.52 -8.13 13.56 5.55 0.08 -8.05 16 12 N -0.70 -8.06 3.64 -53.81 -0.20 -8.26 16 13 C 0.15 1.96 1.69 -67.94 -0.11 1.84 16 14 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 15 C 0.15 2.34 5.10 -4.04 -0.02 2.31 16 16 N -0.75 -15.48 5.24 -59.91 -0.31 -15.79 16 17 C -0.25 -6.36 10.47 -15.06 -0.16 -6.52 16 18 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -27.45 13.97 55.49 0.78 -26.68 16 21 Si 0.88 19.96 27.73 -169.99 -4.71 15.25 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -5.94 6.52 56.52 0.37 -5.57 16 25 C -0.08 -0.87 0.62 -154.51 -0.10 -0.97 16 26 C -0.14 -1.45 7.97 37.16 0.30 -1.16 16 27 C -0.14 -1.57 8.12 37.16 0.30 -1.27 16 28 C -0.13 -1.61 7.00 37.16 0.26 -1.35 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.85 6.84 -51.93 -0.36 0.50 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.14 0.86 7.12 -51.93 -0.37 0.49 16 38 H 0.41 3.99 8.60 -40.82 -0.35 3.64 16 39 H 0.04 0.61 6.17 -51.93 -0.32 0.29 16 40 H 0.05 0.77 6.71 -51.93 -0.35 0.43 16 41 H 0.36 7.26 5.20 -40.82 -0.21 7.05 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.05 0.50 7.60 -51.93 -0.39 0.10 16 44 H 0.06 0.69 6.32 -51.93 -0.33 0.36 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.73 6.55 -51.93 -0.34 0.39 16 49 H 0.05 0.65 5.78 -51.93 -0.30 0.35 16 50 H 0.06 0.87 7.53 -51.93 -0.39 0.47 16 51 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -33.63 402.26 -5.19 -38.82 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.35 Total: 8.75 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.38 Total: -1.17 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 2.11 Total: -59.66 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.08 Total: -8.05 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.71 Total: 15.25 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.63 -5.19 -38.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700994747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.149 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds