Wall clock time and date at job start Tue Mar 31 2020 21:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46907 * 2 1 4 4 C 1.50700 * 109.46893 * 120.00397 * 2 1 3 5 5 N 1.31069 * 126.65926 * 300.16727 * 4 2 1 6 6 N 1.28846 * 107.98705 * 180.24856 * 5 4 2 7 7 N 1.28736 * 109.39613 * 359.74923 * 6 5 4 8 8 N 1.29019 * 108.81326 * 0.02562 * 7 6 5 9 9 C 1.46496 * 126.44211 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47634 * 90.01864 * 9 8 7 11 11 O 1.21287 * 119.99595 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00570 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00280 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.46956 * 35.00871 * 13 12 10 15 15 C 1.53002 * 109.47037 * 155.00016 * 13 12 10 16 16 N 1.46501 * 109.47237 * 305.00331 * 15 13 12 17 17 C 1.36937 * 120.00070 * 179.97438 * 16 15 13 18 18 H 1.08008 * 119.99933 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00222 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00314 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00068 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47305 * 89.99588 * 21 19 17 23 23 H 1.48498 * 109.47279 * 209.99917 * 21 19 17 24 24 H 1.48506 * 109.47173 * 330.00016 * 21 19 17 25 25 C 1.52992 * 109.47337 * 275.00076 * 13 12 10 26 26 C 1.52997 * 109.47482 * 300.00145 * 25 13 12 27 27 C 1.53006 * 109.47223 * 179.97438 * 25 13 12 28 28 C 1.52999 * 109.46961 * 60.00506 * 25 13 12 29 29 H 1.09004 * 109.46812 * 300.00067 * 1 2 3 30 30 H 1.09003 * 109.46752 * 59.99331 * 1 2 3 31 31 H 1.08993 * 109.47563 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46501 * 240.00334 * 2 1 3 33 33 H 1.09001 * 109.46649 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47860 * 299.99572 * 3 2 1 35 35 H 1.09000 * 109.47267 * 60.00804 * 3 2 1 36 36 H 1.09007 * 109.46797 * 330.02164 * 9 8 7 37 37 H 1.09002 * 109.47417 * 210.02406 * 9 8 7 38 38 H 0.97000 * 119.99554 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.47029 * 65.00199 * 15 13 12 40 40 H 1.08996 * 109.47572 * 185.00142 * 15 13 12 41 41 H 0.96998 * 120.00102 * 0.02562 * 16 15 13 42 42 H 0.96996 * 120.00203 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47153 * 59.99783 * 26 25 13 44 44 H 1.09001 * 109.46832 * 299.99974 * 26 25 13 45 45 H 1.09004 * 109.47261 * 179.97438 * 26 25 13 46 46 H 1.08993 * 109.46955 * 180.02562 * 27 25 13 47 47 H 1.09000 * 109.47050 * 300.00346 * 27 25 13 48 48 H 1.09001 * 109.47002 * 60.00080 * 27 25 13 49 49 H 1.09002 * 109.46716 * 299.99630 * 28 25 13 50 50 H 1.09000 * 109.47486 * 59.99547 * 28 25 13 51 51 H 1.09001 * 109.47362 * 180.02562 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7950 -0.3803 2.4764 6 7 2.4016 -1.2270 3.2349 7 7 3.0153 -2.0917 2.5050 8 7 2.8096 -1.8089 1.2631 9 6 3.3288 -2.5422 0.1060 10 6 2.3500 -3.6183 -0.2874 11 8 1.3198 -3.7587 0.3371 12 7 2.6189 -4.4242 -1.3337 13 6 1.6676 -5.4707 -1.7157 14 1 0.6508 -5.1177 -1.5440 15 6 1.8472 -5.8069 -3.1975 16 7 1.7216 -4.5840 -3.9944 17 6 1.8470 -4.6388 -5.3569 18 1 2.0380 -5.5837 -5.8441 19 6 1.7274 -3.4803 -6.1121 20 7 1.8475 -3.5330 -7.4218 21 14 1.3963 -1.8463 -5.2697 22 1 2.6864 -1.1946 -4.9289 23 1 0.6232 -0.9665 -6.1825 24 1 0.6160 -2.0789 -4.0277 25 6 1.9218 -6.7229 -0.8742 26 6 3.3491 -7.2184 -1.1153 27 6 0.9278 -7.8157 -1.2728 28 6 1.7421 -6.3867 0.6075 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 4.2852 -2.9974 0.3637 37 1 3.4670 -1.8541 -0.7281 38 1 3.4427 -4.3117 -1.8333 39 1 2.8338 -6.2429 -3.3541 40 1 1.0820 -6.5202 -3.5036 41 1 1.5503 -3.7355 -3.5569 42 1 1.7636 -2.7235 -7.9495 43 1 4.0569 -6.4398 -0.8311 44 1 3.4770 -7.4579 -2.1710 45 1 3.5303 -8.1103 -0.5154 46 1 1.1087 -8.7076 -0.6730 47 1 -0.0889 -7.4624 -1.1006 48 1 1.0553 -8.0553 -2.3285 49 1 2.4500 -5.6080 0.8918 50 1 0.7253 -6.0337 0.7794 51 1 1.9237 -7.2787 1.2071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700994747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:36 Heat of formation + Delta-G solvation = 59.801576 kcal Electronic energy + Delta-G solvation = -31691.970983 eV Core-core repulsion = 27663.498896 eV Total energy + Delta-G solvation = -4028.472087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.32106 -41.56940 -39.02957 -37.19583 -36.45175 -36.30551 -34.83412 -33.35193 -32.56777 -30.63575 -29.38566 -28.18526 -28.17159 -27.80951 -25.57283 -25.50123 -24.44745 -23.07615 -22.18943 -21.54592 -20.13298 -19.70917 -18.94513 -18.62251 -17.49398 -17.27218 -16.95744 -16.70556 -16.34031 -15.88576 -15.70498 -15.32590 -15.06288 -14.85152 -14.74048 -14.48583 -14.41726 -14.26754 -13.89209 -13.78643 -13.34558 -13.25458 -13.16537 -13.13719 -13.00399 -12.76302 -12.73682 -12.58023 -12.48452 -12.37960 -12.36837 -12.32441 -12.13580 -12.07891 -11.95404 -11.79581 -11.68363 -11.35182 -11.21835 -10.98920 -10.88369 -10.09435 -9.26974 -7.98214 -5.32938 0.06603 0.78170 1.10341 1.32031 1.37275 1.45365 1.52529 1.99666 2.52291 2.81773 3.10614 3.33047 3.35112 3.48870 3.53977 3.77613 3.84567 3.94499 3.97952 3.99828 4.02395 4.15047 4.27324 4.32748 4.39625 4.56627 4.60635 4.70875 4.76095 4.77177 4.80565 4.83375 4.86111 4.89532 4.93283 5.02531 5.05394 5.08415 5.11994 5.19724 5.20464 5.26881 5.28323 5.35291 5.48687 5.55271 5.80671 6.23754 6.34524 7.00950 7.11142 7.46126 7.84644 8.04390 9.22979 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.005018 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.842932 B = 5578.817510 C = 8168.037224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 C -0.139 4.139 4 C 0.209 3.791 5 N -0.324 5.324 6 N -0.106 5.106 7 N -0.097 5.097 8 N -0.288 5.288 9 C 0.082 3.918 10 C 0.501 3.499 11 O -0.557 6.557 12 N -0.695 5.695 13 C 0.159 3.841 14 H 0.065 0.935 15 C 0.147 3.853 16 N -0.753 5.753 17 C -0.232 4.232 18 H 0.058 0.942 19 C -0.062 4.062 20 N -0.984 5.984 21 Si 0.948 3.052 22 H -0.258 1.258 23 H -0.305 1.305 24 H -0.257 1.257 25 C -0.069 4.069 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.119 4.119 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.419 0.581 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.366 0.634 42 H 0.257 0.743 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.043 0.957 50 H 0.035 0.965 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 2.120 14.778 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.173 5.173 6 N -0.099 5.099 7 N -0.083 5.083 8 N -0.089 5.089 9 C -0.043 4.043 10 C 0.285 3.715 11 O -0.435 6.435 12 N -0.348 5.348 13 C 0.054 3.946 14 H 0.083 0.917 15 C 0.021 3.979 16 N -0.399 5.399 17 C -0.363 4.363 18 H 0.076 0.924 19 C -0.254 4.254 20 N -0.634 5.634 21 Si 0.775 3.225 22 H -0.183 1.183 23 H -0.233 1.233 24 H -0.182 1.182 25 C -0.071 4.071 26 C -0.196 4.196 27 C -0.200 4.200 28 C -0.176 4.176 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.195 0.805 37 H 0.195 0.805 38 H 0.257 0.743 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.199 0.801 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.062 0.938 50 H 0.054 0.946 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.740 1.718 16.465 17.220 hybrid contribution -0.255 0.705 -1.130 1.356 sum 4.485 2.423 15.335 16.160 Atomic orbital electron populations 1.21815 0.92173 1.01957 1.04109 1.20074 0.97566 0.97292 0.88903 1.21849 1.01742 0.91933 1.04231 1.26562 0.93622 0.88645 0.98048 1.74870 1.20507 1.22463 0.99472 1.78547 1.07980 0.99903 1.23508 1.78759 1.20517 1.20713 0.88284 1.48025 1.34165 1.19881 1.06789 1.22504 0.99352 0.95890 0.86508 1.20567 0.87301 0.82797 0.80836 1.90825 1.27822 1.71404 1.53465 1.45764 1.24687 1.33174 1.31148 1.21139 0.92730 0.87381 0.93352 0.91669 1.21201 1.00284 0.88817 0.87573 1.42615 1.88335 1.06068 1.02896 1.18981 1.39705 0.94665 0.82902 0.92422 1.25500 1.02548 1.01618 0.95715 1.69892 1.58864 1.28758 1.05926 0.85514 0.78838 0.80032 0.78123 1.18257 1.23277 1.18176 1.20839 0.97575 0.93950 0.94716 1.21900 0.94043 1.01422 1.02277 1.21905 0.98063 0.97967 1.02065 1.21757 1.00722 1.00362 0.94792 0.91616 0.88866 0.94199 0.87300 0.91489 0.88783 0.91851 0.80454 0.80536 0.74329 0.92828 0.94314 0.80099 0.93468 0.91925 0.91896 0.91751 0.91094 0.93473 0.91897 0.93752 0.94565 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.18 71.98 0.66 -2.14 16 2 C -0.02 -0.30 3.26 -11.54 -0.04 -0.33 16 3 C -0.14 -1.91 9.18 71.98 0.66 -1.25 16 4 C 0.21 5.03 6.64 138.13 0.92 5.95 16 5 N -0.32 -9.69 12.36 -50.45 -0.62 -10.32 16 6 N -0.11 -3.43 13.43 37.01 0.50 -2.93 16 7 N -0.10 -2.78 13.29 37.02 0.49 -2.28 16 8 N -0.29 -6.56 2.83 -341.98 -0.97 -7.53 16 9 C 0.08 1.16 6.57 85.63 0.56 1.72 16 10 C 0.50 10.72 6.25 87.66 0.55 11.26 16 11 O -0.56 -16.90 13.56 -3.05 -0.04 -16.95 16 12 N -0.70 -13.99 3.64 -442.56 -1.61 -15.60 16 13 C 0.16 3.99 1.69 44.99 0.08 4.07 16 14 H 0.07 2.00 7.58 -2.39 -0.02 1.99 16 15 C 0.15 4.50 5.10 86.38 0.44 4.94 16 16 N -0.75 -29.60 5.24 -343.45 -1.80 -31.40 16 17 C -0.23 -11.81 10.47 84.03 0.88 -10.93 16 18 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 19 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 20 N -0.98 -59.09 13.97 21.65 0.30 -58.78 16 21 Si 0.95 39.92 27.73 68.60 1.90 41.83 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.31 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.26 -9.80 6.52 99.48 0.65 -9.15 16 25 C -0.07 -1.47 0.62 -52.18 -0.03 -1.50 16 26 C -0.14 -2.43 7.97 71.98 0.57 -1.86 16 27 C -0.14 -2.96 8.12 71.98 0.58 -2.38 16 28 C -0.12 -2.79 7.00 71.98 0.50 -2.29 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 1.56 6.84 -2.39 -0.02 1.54 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.18 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.18 1.22 7.12 -2.39 -0.02 1.20 16 38 H 0.42 6.59 8.60 -92.71 -0.80 5.80 16 39 H 0.05 1.54 6.17 -2.39 -0.01 1.53 16 40 H 0.04 1.27 6.71 -2.39 -0.02 1.26 16 41 H 0.37 13.69 5.20 -92.71 -0.48 13.20 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.06 0.97 7.60 -2.39 -0.02 0.95 16 44 H 0.06 1.15 6.32 -2.39 -0.02 1.14 16 45 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.06 1.34 6.55 -2.39 -0.02 1.32 16 49 H 0.04 1.08 5.78 -2.39 -0.01 1.07 16 50 H 0.04 1.02 7.53 -2.39 -0.02 1.00 16 51 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.95 402.26 4.57 -71.38 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.39 Total: 30.19 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 6.80 Total: 2.39 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -3.71 Total: -128.85 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.04 Total: -16.95 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.90 Total: 41.83 kcal Total: -75.95 4.57 -71.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700994747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.186 kcal (2) G-P(sol) polarization free energy of solvation -75.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds