Wall clock time and date at job start Tue Mar 31 2020 20:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99719 * 2 1 4 4 C 1.53003 * 109.47296 * 269.99439 * 3 2 1 5 5 H 1.08994 * 112.74584 * 284.23696 * 4 3 2 6 6 C 1.53508 * 113.47496 * 153.37908 * 4 3 2 7 7 C 1.53516 * 83.57706 * 219.21410 * 6 4 3 8 8 N 1.47484 * 87.93044 * 26.02937 * 7 6 4 9 9 C 1.46906 * 110.99709 * 221.29807 * 8 7 6 10 10 C 1.50698 * 109.46688 * 265.96661 * 9 8 7 11 11 O 1.21293 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.37102 * 119.99634 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00399 * 0.02562 * 13 12 10 15 15 C 1.38954 * 120.00062 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99693 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00141 * 179.72913 * 15 13 12 18 18 H 1.48502 * 109.46967 * 270.27331 * 17 15 13 19 19 H 1.48505 * 109.47170 * 30.26803 * 17 15 13 20 20 H 1.48498 * 109.47513 * 150.27417 * 17 15 13 21 21 C 1.34774 * 119.99804 * 179.97438 * 2 1 3 22 22 O 1.21283 * 119.99855 * 180.02562 * 21 2 1 23 23 C 1.50696 * 120.00098 * 359.97438 * 21 2 1 24 24 N 1.46908 * 109.47140 * 179.97438 * 23 21 2 25 25 C 1.48532 * 110.99874 * 52.60728 * 24 23 21 26 26 C 1.54936 * 103.22639 * 159.72078 * 25 24 23 27 27 C 1.54591 * 102.92131 * 322.58530 * 26 25 24 28 28 C 1.47902 * 110.99754 * 170.00412 * 24 23 21 29 29 H 1.09000 * 109.46881 * 89.99993 * 1 2 3 30 30 H 1.08996 * 109.46926 * 210.00138 * 1 2 3 31 31 H 1.09000 * 109.47049 * 330.00352 * 1 2 3 32 32 H 1.09008 * 109.47039 * 149.99744 * 3 2 1 33 33 H 1.08998 * 109.47667 * 30.00317 * 3 2 1 34 34 H 1.08993 * 114.17673 * 332.86574 * 6 4 3 35 35 H 1.09008 * 114.16479 * 105.38158 * 6 4 3 36 36 H 1.08998 * 113.47778 * 271.26446 * 7 6 4 37 37 H 1.08994 * 113.47825 * 140.79539 * 7 6 4 38 38 H 1.09003 * 109.46625 * 145.97243 * 9 8 7 39 39 H 1.08993 * 109.47154 * 25.97386 * 9 8 7 40 40 H 0.96991 * 120.00493 * 0.02562 * 12 10 9 41 41 H 0.97005 * 120.00032 * 359.72836 * 16 15 13 42 42 H 1.08994 * 109.47628 * 300.00182 * 23 21 2 43 43 H 1.09003 * 109.47081 * 60.00444 * 23 21 2 44 44 H 1.09004 * 110.66527 * 278.15922 * 25 24 23 45 45 H 1.08999 * 110.66413 * 41.28744 * 25 24 23 46 46 H 1.09002 * 110.72180 * 204.22867 * 26 25 24 47 47 H 1.09001 * 110.87746 * 81.01718 * 26 25 24 48 48 H 1.09002 * 110.30898 * 263.04305 * 27 26 25 49 49 H 1.09000 * 110.39762 * 140.91667 * 27 26 25 50 50 H 1.08998 * 109.91922 * 333.50774 * 28 24 23 51 51 H 1.09002 * 109.91839 * 94.60718 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 3.2502 1.1431 -1.9221 6 6 2.6015 3.2301 -1.5995 7 6 1.7995 3.0021 -2.8885 8 7 1.2250 1.8005 -2.2550 9 6 1.1443 0.6886 -3.2118 10 6 -0.2220 0.6713 -3.8475 11 8 -1.0470 1.5036 -3.5347 12 7 -0.5266 -0.2683 -4.7644 13 6 -1.7694 -0.2838 -5.3431 14 1 -2.5041 0.4572 -5.0646 15 6 -2.0838 -1.2529 -6.2880 16 7 -1.1897 -2.1542 -6.6273 17 14 -3.7796 -1.2786 -7.0710 18 1 -4.6882 -2.1248 -6.2563 19 1 -4.3163 0.1046 -7.1350 20 1 -3.6826 -1.8360 -8.4439 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1672 0.0010 23 6 1.3854 -2.4723 0.0017 24 7 2.3400 -3.5889 0.0014 25 6 3.3268 -3.4458 1.1023 26 6 3.8709 -4.8855 1.2802 27 6 2.6161 -5.7596 1.0533 28 6 1.6510 -4.8753 0.2422 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.1500 1.1384 0.5139 33 1 1.6085 2.0284 0.5139 34 1 2.0743 3.8108 -0.8426 35 1 3.6266 3.5638 -1.7612 36 1 2.4232 2.7804 -3.7544 37 1 1.0644 3.7822 -3.0863 38 1 1.3140 -0.2530 -2.6897 39 1 1.9027 0.8179 -3.9838 40 1 0.1332 -0.9336 -5.0148 41 1 -0.3090 -2.1406 -6.2210 42 1 0.7591 -2.5295 0.8919 43 1 0.7584 -2.5306 -0.8881 44 1 4.1278 -2.7645 0.8149 45 1 2.8383 -3.1037 2.0147 46 1 4.2633 -5.0279 2.2871 47 1 4.6350 -5.1068 0.5350 48 1 2.1672 -6.0322 2.0085 49 1 2.8741 -6.6552 0.4881 50 1 0.7363 -4.7059 0.8103 51 1 1.4145 -5.3534 -0.7083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707063111.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:01 Heat of formation + Delta-G solvation = -8.546808 kcal Electronic energy + Delta-G solvation = -31084.764132 eV Core-core repulsion = 27021.035485 eV Total energy + Delta-G solvation = -4063.728646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.69225 -39.79463 -38.24105 -37.82677 -35.37891 -34.24610 -32.55093 -31.31821 -30.61777 -29.19782 -28.91161 -26.94709 -25.90706 -25.59926 -23.62962 -23.15241 -21.39416 -20.96128 -19.80285 -19.64404 -19.04913 -17.88100 -17.13802 -16.64349 -16.26579 -16.11824 -15.94528 -15.61345 -15.33712 -14.96865 -14.39409 -14.27591 -14.06782 -13.70264 -13.54291 -13.50736 -13.23819 -12.90102 -12.72756 -12.55387 -12.54155 -12.31566 -12.22689 -11.68611 -11.59533 -11.51636 -11.44928 -11.34782 -11.17926 -11.05010 -10.96899 -10.85713 -10.74015 -10.55090 -10.21982 -9.84907 -9.57135 -9.51855 -8.96787 -8.53280 -8.44638 -8.21990 -8.00715 -6.72949 -3.86291 2.59560 2.89178 3.31035 3.35246 3.54287 3.86235 3.89059 4.00074 4.31797 4.36138 4.50282 4.52691 4.70787 4.79256 4.82502 4.93648 5.01069 5.14142 5.15234 5.19456 5.23577 5.30589 5.33122 5.40808 5.42934 5.44764 5.54230 5.61576 5.62161 5.65991 5.68261 5.68681 5.73871 5.78155 5.89684 5.94978 6.03037 6.05563 6.08485 6.12549 6.20352 6.46927 6.55711 6.77027 6.78756 7.16932 7.39492 7.82745 8.09985 8.18718 8.62947 8.83311 9.50371 9.91986 10.70350 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008483 B = 0.003821 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.772569 B = 7326.726809 C = 9923.822598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.605 5.605 3 C 0.139 3.861 4 C 0.005 3.995 5 H 0.078 0.922 6 C -0.136 4.136 7 C 0.004 3.996 8 N -0.428 5.428 9 C 0.012 3.988 10 C 0.450 3.550 11 O -0.569 6.569 12 N -0.579 5.579 13 C -0.381 4.381 14 H 0.098 0.902 15 C -0.010 4.010 16 N -0.902 5.902 17 Si 1.092 2.908 18 H -0.285 1.285 19 H -0.284 1.284 20 H -0.281 1.281 21 C 0.514 3.486 22 O -0.532 6.532 23 C 0.027 3.973 24 N -0.501 5.501 25 C 0.032 3.968 26 C -0.126 4.126 27 C -0.130 4.130 28 C 0.033 3.967 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.374 0.626 41 H 0.261 0.739 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.034 0.966 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.044 0.956 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.216 -0.341 16.668 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.338 5.338 3 C 0.015 3.985 4 C -0.106 4.106 5 H 0.096 0.904 6 C -0.175 4.175 7 C -0.125 4.125 8 N -0.151 5.151 9 C -0.121 4.121 10 C 0.236 3.764 11 O -0.451 6.451 12 N -0.218 5.218 13 C -0.510 4.510 14 H 0.116 0.884 15 C -0.212 4.212 16 N -0.541 5.541 17 Si 0.919 3.081 18 H -0.211 1.211 19 H -0.210 1.210 20 H -0.207 1.207 21 C 0.302 3.698 22 O -0.409 6.409 23 C -0.104 4.104 24 N -0.225 5.225 25 C -0.095 4.095 26 C -0.164 4.164 27 C -0.169 4.169 28 C -0.095 4.095 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.207 0.793 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.062 0.938 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.856 -0.583 15.560 17.440 hybrid contribution 1.476 0.219 1.108 1.858 sum 9.331 -0.365 16.668 19.106 Atomic orbital electron populations 1.21882 0.78388 1.02171 1.03670 1.47729 1.07549 1.05499 1.72977 1.21433 0.97332 0.84493 0.95194 1.23887 0.93726 0.96625 0.96391 0.90377 1.23163 1.00494 0.95046 0.98762 1.23741 0.97344 0.95689 0.95773 1.68762 1.29724 1.02353 1.14234 1.22476 0.97409 0.96450 0.95732 1.19577 0.88864 0.84546 0.83427 1.90522 1.50199 1.40019 1.64396 1.41974 1.14648 1.27953 1.37189 1.20534 0.90886 1.17048 1.22558 0.88389 1.26473 1.06551 0.92500 0.95686 1.70866 1.05726 1.34544 1.42963 0.83107 0.72469 0.76156 0.76389 1.21141 1.20987 1.20679 1.20449 0.88028 0.85200 0.76157 1.90606 1.13693 1.86942 1.49667 1.22287 0.95015 0.89754 1.03313 1.64676 1.13103 1.00394 1.44362 1.23510 0.96976 0.97514 0.91482 1.22521 0.97597 0.94749 1.01522 1.22389 0.96019 0.98692 0.99767 1.22948 0.95896 0.90367 1.00258 0.90813 0.92053 0.90800 0.89829 0.89988 0.88838 0.90728 0.91754 0.89387 0.90053 0.92772 0.79316 0.92730 0.91918 0.87482 0.87068 0.94811 0.91362 0.90710 0.91695 0.90937 0.93772 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 9.82 59.85 0.59 1.60 16 2 N -0.60 -7.74 2.59 -181.57 -0.47 -8.21 16 3 C 0.14 1.65 5.60 -4.04 -0.02 1.62 16 4 C 0.00 0.06 3.35 -71.43 -0.24 -0.18 16 5 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 6 C -0.14 -1.49 8.00 -26.20 -0.21 -1.70 16 7 C 0.00 0.05 7.71 -7.54 -0.06 -0.01 16 8 N -0.43 -6.88 4.85 -237.92 -1.15 -8.04 16 9 C 0.01 0.21 4.62 -4.97 -0.02 0.19 16 10 C 0.45 10.62 7.85 -10.99 -0.09 10.54 16 11 O -0.57 -15.35 16.01 5.55 0.09 -15.26 16 12 N -0.58 -14.64 5.28 -10.96 -0.06 -14.70 16 13 C -0.38 -10.68 9.68 -14.93 -0.14 -10.83 16 14 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 15 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 16 N -0.90 -25.42 13.68 55.50 0.76 -24.66 16 17 Si 1.09 24.35 29.92 -169.99 -5.09 19.27 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.51 7.18 7.39 -10.99 -0.08 7.10 16 22 O -0.53 -8.62 13.10 5.55 0.07 -8.55 16 23 C 0.03 0.34 4.07 -4.97 -0.02 0.32 16 24 N -0.50 -6.49 5.26 -231.88 -1.22 -7.71 16 25 C 0.03 0.39 5.30 -1.90 -0.01 0.38 16 26 C -0.13 -1.23 7.06 -24.87 -0.18 -1.40 16 27 C -0.13 -1.18 6.93 -25.37 -0.18 -1.36 16 28 C 0.03 0.36 6.70 -2.75 -0.02 0.34 16 29 H 0.07 1.18 7.21 -51.93 -0.37 0.80 16 30 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 31 H 0.07 0.84 7.89 -51.93 -0.41 0.43 16 32 H 0.08 0.98 7.42 -51.92 -0.39 0.60 16 33 H 0.08 0.86 7.63 -51.93 -0.40 0.47 16 34 H 0.09 0.94 7.94 -51.93 -0.41 0.53 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.06 0.89 7.42 -51.93 -0.39 0.51 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.46 7.83 -51.93 -0.41 1.05 16 39 H 0.05 0.94 7.30 -51.93 -0.38 0.56 16 40 H 0.37 8.94 6.73 -40.82 -0.27 8.67 16 41 H 0.26 7.15 6.78 -40.82 -0.28 6.87 16 42 H 0.06 0.67 7.07 -51.93 -0.37 0.30 16 43 H 0.11 1.41 8.11 -51.93 -0.42 0.99 16 44 H 0.11 1.57 5.97 -51.93 -0.31 1.26 16 45 H 0.03 0.39 8.02 -51.93 -0.42 -0.02 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.04 0.43 7.57 -51.93 -0.39 0.04 16 51 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 400.96 15.07 6.04 6.04 Total: -1.00 -33.53 400.96 -10.28 -43.81 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -8.48 Total: 11.75 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.77 Total: 6.25 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -2.14 Total: -63.32 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.16 Total: -23.81 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.09 Total: 19.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.53 -10.28 -43.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707063111.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.264 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds