Wall clock time and date at job start Tue Mar 31 2020 20:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99719 * 2 1 4 4 C 1.53003 * 109.47296 * 269.99439 * 3 2 1 5 5 H 1.08994 * 112.74584 * 284.23696 * 4 3 2 6 6 C 1.53508 * 113.47496 * 153.37908 * 4 3 2 7 7 C 1.53516 * 83.57706 * 219.21410 * 6 4 3 8 8 N 1.47484 * 87.93044 * 26.02937 * 7 6 4 9 9 C 1.46906 * 110.99709 * 221.29807 * 8 7 6 10 10 C 1.50698 * 109.46688 * 265.96661 * 9 8 7 11 11 O 1.21293 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.37102 * 119.99634 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00399 * 0.02562 * 13 12 10 15 15 C 1.38954 * 120.00062 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99693 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00141 * 179.72913 * 15 13 12 18 18 H 1.48502 * 109.46967 * 270.27331 * 17 15 13 19 19 H 1.48505 * 109.47170 * 30.26803 * 17 15 13 20 20 H 1.48498 * 109.47513 * 150.27417 * 17 15 13 21 21 C 1.34774 * 119.99804 * 179.97438 * 2 1 3 22 22 O 1.21283 * 119.99855 * 180.02562 * 21 2 1 23 23 C 1.50696 * 120.00098 * 359.97438 * 21 2 1 24 24 N 1.46908 * 109.47140 * 179.97438 * 23 21 2 25 25 C 1.48532 * 110.99874 * 52.60728 * 24 23 21 26 26 C 1.54936 * 103.22639 * 159.72078 * 25 24 23 27 27 C 1.54591 * 102.92131 * 322.58530 * 26 25 24 28 28 C 1.47902 * 110.99754 * 170.00412 * 24 23 21 29 29 H 1.09000 * 109.46881 * 89.99993 * 1 2 3 30 30 H 1.08996 * 109.46926 * 210.00138 * 1 2 3 31 31 H 1.09000 * 109.47049 * 330.00352 * 1 2 3 32 32 H 1.09008 * 109.47039 * 149.99744 * 3 2 1 33 33 H 1.08998 * 109.47667 * 30.00317 * 3 2 1 34 34 H 1.08993 * 114.17673 * 332.86574 * 6 4 3 35 35 H 1.09008 * 114.16479 * 105.38158 * 6 4 3 36 36 H 1.08998 * 113.47778 * 271.26446 * 7 6 4 37 37 H 1.08994 * 113.47825 * 140.79539 * 7 6 4 38 38 H 1.09003 * 109.46625 * 145.97243 * 9 8 7 39 39 H 1.08993 * 109.47154 * 25.97386 * 9 8 7 40 40 H 0.96991 * 120.00493 * 0.02562 * 12 10 9 41 41 H 0.97005 * 120.00032 * 359.72836 * 16 15 13 42 42 H 1.08994 * 109.47628 * 300.00182 * 23 21 2 43 43 H 1.09003 * 109.47081 * 60.00444 * 23 21 2 44 44 H 1.09004 * 110.66527 * 278.15922 * 25 24 23 45 45 H 1.08999 * 110.66413 * 41.28744 * 25 24 23 46 46 H 1.09002 * 110.72180 * 204.22867 * 26 25 24 47 47 H 1.09001 * 110.87746 * 81.01718 * 26 25 24 48 48 H 1.09002 * 110.30898 * 263.04305 * 27 26 25 49 49 H 1.09000 * 110.39762 * 140.91667 * 27 26 25 50 50 H 1.08998 * 109.91922 * 333.50774 * 28 24 23 51 51 H 1.09002 * 109.91839 * 94.60718 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 3.2502 1.1431 -1.9221 6 6 2.6015 3.2301 -1.5995 7 6 1.7995 3.0021 -2.8885 8 7 1.2250 1.8005 -2.2550 9 6 1.1443 0.6886 -3.2118 10 6 -0.2220 0.6713 -3.8475 11 8 -1.0470 1.5036 -3.5347 12 7 -0.5266 -0.2683 -4.7644 13 6 -1.7694 -0.2838 -5.3431 14 1 -2.5041 0.4572 -5.0646 15 6 -2.0838 -1.2529 -6.2880 16 7 -1.1897 -2.1542 -6.6273 17 14 -3.7796 -1.2786 -7.0710 18 1 -4.6882 -2.1248 -6.2563 19 1 -4.3163 0.1046 -7.1350 20 1 -3.6826 -1.8360 -8.4439 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1672 0.0010 23 6 1.3854 -2.4723 0.0017 24 7 2.3400 -3.5889 0.0014 25 6 3.3268 -3.4458 1.1023 26 6 3.8709 -4.8855 1.2802 27 6 2.6161 -5.7596 1.0533 28 6 1.6510 -4.8753 0.2422 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.1500 1.1384 0.5139 33 1 1.6085 2.0284 0.5139 34 1 2.0743 3.8108 -0.8426 35 1 3.6266 3.5638 -1.7612 36 1 2.4232 2.7804 -3.7544 37 1 1.0644 3.7822 -3.0863 38 1 1.3140 -0.2530 -2.6897 39 1 1.9027 0.8179 -3.9838 40 1 0.1332 -0.9336 -5.0148 41 1 -0.3090 -2.1406 -6.2210 42 1 0.7591 -2.5295 0.8919 43 1 0.7584 -2.5306 -0.8881 44 1 4.1278 -2.7645 0.8149 45 1 2.8383 -3.1037 2.0147 46 1 4.2633 -5.0279 2.2871 47 1 4.6350 -5.1068 0.5350 48 1 2.1672 -6.0322 2.0085 49 1 2.8741 -6.6552 0.4881 50 1 0.7363 -4.7059 0.8103 51 1 1.4145 -5.3534 -0.7083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707063111.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:00 Heat of formation + Delta-G solvation = -33.662629 kcal Electronic energy + Delta-G solvation = -31085.853235 eV Core-core repulsion = 27021.035485 eV Total energy + Delta-G solvation = -4064.817750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83609 -40.93311 -39.79583 -39.09326 -36.47807 -36.30925 -33.47410 -33.21843 -32.11600 -30.25502 -29.76067 -27.95420 -27.33695 -26.91130 -25.39177 -24.18471 -22.29617 -21.76064 -21.53370 -20.85496 -20.11623 -19.95011 -18.20269 -18.08480 -17.50624 -17.31213 -17.26336 -16.68972 -16.38320 -16.24151 -16.18337 -15.55034 -15.47287 -15.04831 -15.00471 -14.52323 -14.35769 -14.22333 -13.92370 -13.85741 -13.52384 -13.35325 -13.25655 -13.13736 -12.86220 -12.70682 -12.60336 -12.49824 -12.41114 -12.24536 -12.07926 -11.94628 -11.90498 -11.87549 -11.69831 -11.50950 -11.48150 -10.65072 -10.49330 -10.10666 -9.93412 -9.54304 -9.42697 -8.92466 -6.06469 1.50697 1.51405 1.54151 1.81224 1.88715 1.99316 2.38618 2.71748 2.99096 3.15353 3.26899 3.38505 3.50754 3.71125 3.75608 3.88656 3.98130 4.00423 4.11756 4.13990 4.15404 4.22916 4.26341 4.29622 4.30713 4.34654 4.38126 4.56420 4.61356 4.62466 4.69216 4.75228 4.79439 4.91066 4.94357 4.96255 4.99514 5.09434 5.19038 5.19714 5.27570 5.30420 5.50291 5.60355 5.85443 5.89755 5.92265 5.97841 6.34669 6.56594 6.74928 7.11657 7.43707 7.92224 8.54385 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008483 B = 0.003821 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.772569 B = 7326.726809 C = 9923.822598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.602 5.602 3 C 0.137 3.863 4 C 0.008 3.992 5 H 0.068 0.932 6 C -0.109 4.109 7 C -0.008 4.008 8 N -0.447 5.447 9 C 0.031 3.969 10 C 0.454 3.546 11 O -0.603 6.603 12 N -0.590 5.590 13 C -0.406 4.406 14 H 0.074 0.926 15 C -0.042 4.042 16 N -0.918 5.918 17 Si 1.135 2.865 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.274 1.274 21 C 0.510 3.490 22 O -0.557 6.557 23 C 0.030 3.970 24 N -0.525 5.525 25 C 0.036 3.964 26 C -0.122 4.122 27 C -0.125 4.125 28 C 0.029 3.971 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.380 0.620 41 H 0.257 0.743 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.054 0.946 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.487 -0.406 18.188 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.334 5.334 3 C 0.014 3.986 4 C -0.103 4.103 5 H 0.086 0.914 6 C -0.147 4.147 7 C -0.137 4.137 8 N -0.169 5.169 9 C -0.102 4.102 10 C 0.242 3.758 11 O -0.487 6.487 12 N -0.229 5.229 13 C -0.535 4.535 14 H 0.092 0.908 15 C -0.240 4.240 16 N -0.557 5.557 17 Si 0.955 3.045 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.199 1.199 21 C 0.299 3.701 22 O -0.436 6.436 23 C -0.101 4.101 24 N -0.250 5.250 25 C -0.091 4.091 26 C -0.160 4.160 27 C -0.163 4.163 28 C -0.098 4.098 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.213 0.787 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.073 0.927 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.151 -0.645 17.097 18.952 hybrid contribution 1.433 0.305 0.667 1.610 sum 9.585 -0.340 17.764 20.188 Atomic orbital electron populations 1.21814 0.78096 1.03908 1.01633 1.47792 1.07705 1.05661 1.72260 1.21556 0.97901 0.84503 0.94593 1.23905 0.91822 0.98301 0.96257 0.91431 1.23111 1.01536 0.93400 0.96652 1.23853 0.97583 0.94573 0.97677 1.68770 1.31935 1.02002 1.14238 1.22245 0.93832 0.97855 0.96232 1.20477 0.90382 0.82912 0.82059 1.90489 1.51948 1.41108 1.65191 1.42042 1.14214 1.28782 1.37910 1.20518 0.91788 1.17297 1.23865 0.90757 1.27822 1.09230 0.91497 0.95483 1.70947 1.05975 1.35238 1.43555 0.82605 0.68975 0.76842 0.76077 1.19420 1.20188 1.19929 1.20720 0.87817 0.85877 0.75694 1.90604 1.14725 1.87346 1.50901 1.22245 0.94950 0.89207 1.03687 1.64625 1.13843 1.01235 1.45321 1.23389 0.96163 0.98433 0.91162 1.22512 0.97729 0.93350 1.02430 1.22389 0.95167 0.98329 1.00418 1.23012 0.96695 0.89677 1.00429 0.94614 0.89937 0.89536 0.89359 0.88115 0.87304 0.88091 0.91540 0.90871 0.89787 0.91781 0.78703 0.93241 0.89836 0.88579 0.89545 0.94416 0.89449 0.91460 0.89952 0.90222 0.92742 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.12 9.82 127.77 1.25 3.37 16 2 N -0.60 -14.81 2.59 -846.75 -2.20 -17.00 16 3 C 0.14 3.01 5.60 86.38 0.48 3.49 16 4 C 0.01 0.19 3.35 42.19 0.14 0.33 16 5 H 0.07 1.83 7.91 -2.39 -0.02 1.81 16 6 C -0.11 -2.09 8.00 30.94 0.25 -1.84 16 7 C -0.01 -0.22 7.71 83.58 0.64 0.43 16 8 N -0.45 -14.11 4.85 -906.66 -4.39 -18.51 16 9 C 0.03 1.12 4.62 85.56 0.40 1.52 16 10 C 0.45 21.96 7.85 87.66 0.69 22.65 16 11 O -0.60 -33.40 16.01 -3.07 -0.05 -33.45 16 12 N -0.59 -30.69 5.28 -306.98 -1.62 -32.31 16 13 C -0.41 -23.31 9.68 84.04 0.81 -22.50 16 14 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 15 C -0.04 -2.32 5.50 84.93 0.47 -1.85 16 16 N -0.92 -52.06 13.68 21.66 0.30 -51.76 16 17 Si 1.14 48.79 29.92 68.60 2.05 50.85 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C 0.51 14.01 7.39 87.66 0.65 14.66 16 22 O -0.56 -17.97 13.10 -3.04 -0.04 -18.01 16 23 C 0.03 0.74 4.07 85.55 0.35 1.09 16 24 N -0.52 -13.41 5.26 -887.55 -4.67 -18.08 16 25 C 0.04 0.83 5.30 86.65 0.46 1.29 16 26 C -0.12 -2.21 7.06 31.80 0.22 -1.99 16 27 C -0.13 -2.03 6.93 31.47 0.22 -1.81 16 28 C 0.03 0.60 6.70 86.45 0.58 1.18 16 29 H 0.04 1.15 7.21 -2.39 -0.02 1.13 16 30 H 0.08 1.59 6.44 -2.39 -0.02 1.57 16 31 H 0.09 1.84 7.89 -2.39 -0.02 1.82 16 32 H 0.09 1.90 7.42 -2.38 -0.02 1.88 16 33 H 0.10 1.84 7.63 -2.39 -0.02 1.82 16 34 H 0.11 1.81 7.94 -2.39 -0.02 1.79 16 35 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.07 1.79 7.42 -2.39 -0.02 1.77 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.08 3.05 7.83 -2.39 -0.02 3.03 16 39 H 0.06 2.23 7.30 -2.39 -0.02 2.21 16 40 H 0.38 18.69 6.73 -92.72 -0.62 18.07 16 41 H 0.26 14.29 6.78 -92.70 -0.63 13.66 16 42 H 0.08 1.66 7.07 -2.39 -0.02 1.65 16 43 H 0.10 2.56 8.11 -2.39 -0.02 2.54 16 44 H 0.09 2.47 5.97 -2.38 -0.01 2.45 16 45 H 0.04 0.83 8.02 -2.39 -0.02 0.81 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.05 0.98 7.57 -2.39 -0.02 0.97 16 51 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -73.76 400.96 -2.56 -76.32 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: 0.45 Total: 41.94 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 7.61 Total: 20.02 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -12.58 Total: -137.66 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.09 Total: -51.47 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.05 Total: 50.85 kcal Total: -73.76 -2.56 -76.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707063111.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.658 kcal (2) G-P(sol) polarization free energy of solvation -73.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds