Wall clock time and date at job start Tue Mar 31 2020 21:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48503 * 109.47186 * 273.80158 * 3 2 1 5 5 H 1.48505 * 109.47392 * 33.79824 * 3 2 1 6 6 H 1.48495 * 109.47282 * 153.80282 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00243 * 351.40307 * 7 2 1 9 9 N 1.36932 * 120.00140 * 171.40501 * 7 2 1 10 10 C 1.47748 * 125.82259 * 315.42841 * 9 7 2 11 11 C 1.54907 * 104.84166 * 155.83102 * 10 9 7 12 12 C 1.55161 * 101.58557 * 37.09282 * 11 10 9 13 13 C 1.47027 * 125.65242 * 135.52047 * 9 7 2 14 14 H 1.08999 * 109.87856 * 300.59882 * 13 9 7 15 15 C 1.52996 * 109.88046 * 61.60456 * 13 9 7 16 16 C 1.52999 * 109.47485 * 285.21622 * 15 13 9 17 17 C 1.52997 * 109.47210 * 185.90776 * 16 15 13 18 18 N 1.46501 * 109.47177 * 180.02562 * 17 16 15 19 19 C 1.34776 * 120.00137 * 179.97438 * 18 17 16 20 20 O 1.21274 * 120.00303 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.99984 * 180.02562 * 19 18 17 22 22 O 1.42901 * 109.47165 * 180.02562 * 21 19 18 23 23 C 1.42898 * 113.99742 * 179.97438 * 22 21 19 24 24 C 1.53005 * 109.46617 * 179.97438 * 23 22 21 25 25 C 1.54268 * 110.48471 * 185.00157 * 24 23 22 26 26 C 1.53872 * 106.64276 * 217.73565 * 25 24 23 27 27 C 1.54272 * 106.59930 * 359.97438 * 26 25 24 28 28 C 1.54894 * 104.19331 * 23.60703 * 27 26 25 29 29 H 0.97000 * 120.00320 * 0.02562 * 1 2 3 30 30 H 1.08994 * 110.28782 * 37.02507 * 10 9 7 31 31 H 1.09002 * 110.43522 * 274.70535 * 10 9 7 32 32 H 1.09004 * 111.00233 * 279.01666 * 11 10 9 33 33 H 1.09004 * 111.04058 * 155.18504 * 11 10 9 34 34 H 1.08992 * 110.71987 * 206.13620 * 12 11 10 35 35 H 1.08996 * 110.71341 * 82.86146 * 12 11 10 36 36 H 1.09001 * 109.47140 * 165.21987 * 15 13 9 37 37 H 1.09003 * 109.47221 * 45.22334 * 15 13 9 38 38 H 1.09004 * 109.46945 * 65.91106 * 16 15 13 39 39 H 1.08999 * 109.47142 * 305.91094 * 16 15 13 40 40 H 1.09004 * 109.47305 * 60.00652 * 17 16 15 41 41 H 1.08999 * 109.47328 * 300.00204 * 17 16 15 42 42 H 0.97005 * 119.99700 * 0.02562 * 18 17 16 43 43 H 1.08997 * 109.47336 * 59.99903 * 21 19 18 44 44 H 1.08999 * 109.47064 * 300.00165 * 21 19 18 45 45 H 1.09000 * 109.47077 * 60.00410 * 23 22 21 46 46 H 1.08997 * 109.47610 * 299.99399 * 23 22 21 47 47 H 1.09001 * 110.54179 * 307.61289 * 24 23 22 48 48 H 1.08999 * 110.03574 * 98.42956 * 25 24 23 49 49 H 1.09001 * 110.03382 * 337.04400 * 25 24 23 50 50 H 1.08998 * 110.03260 * 119.25612 * 26 25 24 51 51 H 1.08994 * 110.03753 * 240.69286 * 26 25 24 52 52 H 1.08994 * 110.49074 * 142.28745 * 27 26 25 53 53 H 1.09001 * 110.48336 * 264.80331 * 27 26 25 54 54 H 1.09003 * 110.75375 * 80.37138 * 28 27 26 55 55 H 1.08992 * 110.75755 * 203.56054 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4173 2.0929 -1.3970 5 1 1.4901 2.6282 0.7788 6 1 3.5856 1.4183 0.6181 7 6 2.0102 -1.2021 0.0005 8 1 1.4793 -2.1321 0.1408 9 7 3.3680 -1.2088 -0.1767 10 6 4.1125 -0.4253 -1.1840 11 6 5.5406 -0.2843 -0.6008 12 6 5.7403 -1.6679 0.0725 13 6 4.3302 -2.0002 0.6041 14 1 4.2595 -1.7341 1.6588 15 6 4.0444 -3.4923 0.4238 16 6 2.7995 -3.8740 1.2273 17 6 2.5984 -5.3894 1.1670 18 7 1.4061 -5.7548 1.9359 19 6 1.0304 -7.0462 2.0237 20 8 1.6796 -7.9058 1.4667 21 6 -0.1965 -7.4219 2.8142 22 8 -0.3843 -8.8374 2.7579 23 6 -1.5269 -9.3011 3.4800 24 6 -1.6291 -10.8223 3.3504 25 6 -2.9229 -11.3351 4.0160 26 6 -2.5700 -12.6703 4.6945 27 6 -1.0737 -12.9236 4.4175 28 6 -0.4935 -11.5131 4.1470 29 1 -0.4850 0.8400 -0.0004 30 1 3.6563 0.5563 -1.3120 31 1 4.1419 -0.9578 -2.1347 32 1 5.5845 0.5184 0.1353 33 1 6.2728 -0.1258 -1.3926 34 1 6.4551 -1.5982 0.8923 35 1 6.0615 -2.4097 -0.6587 36 1 4.8972 -4.0711 0.7785 37 1 3.8748 -3.7049 -0.6318 38 1 1.9274 -3.3746 0.8052 39 1 2.9281 -3.5655 2.2648 40 1 3.4704 -5.8889 1.5892 41 1 2.4698 -5.6979 0.1295 42 1 0.8866 -5.0671 2.3811 43 1 -1.0681 -6.9223 2.3916 44 1 -0.0686 -7.1136 3.8518 45 1 -2.4265 -8.8408 3.0712 46 1 -1.4264 -9.0317 4.5313 47 1 -1.5954 -11.1200 2.3024 48 1 -3.6940 -11.4920 3.2618 49 1 -3.2694 -10.6181 4.7603 50 1 -2.7444 -12.6010 5.7683 51 1 -3.1698 -13.4751 4.2696 52 1 -0.5952 -13.3724 5.2878 53 1 -0.9505 -13.5630 3.5434 54 1 -0.3040 -10.9874 5.0828 55 1 0.4166 -11.5776 3.5507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713432985.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:15 Heat of formation + Delta-G solvation = -103.332515 kcal Electronic energy + Delta-G solvation = -29093.666474 eV Core-core repulsion = 25129.367954 eV Total energy + Delta-G solvation = -3964.298520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.86311 -39.70631 -39.50805 -37.88173 -36.55762 -34.58888 -33.93527 -31.71156 -31.65493 -30.29820 -29.55701 -28.43880 -26.38593 -25.50221 -24.97149 -22.89358 -21.90603 -21.54760 -21.39221 -20.88017 -20.67777 -18.85734 -18.25414 -17.90331 -17.76140 -17.39091 -16.86550 -16.52432 -16.18351 -16.12405 -15.87793 -15.57282 -15.02282 -14.93789 -14.69054 -14.24527 -14.21152 -14.09611 -13.94238 -13.65536 -13.43128 -13.35834 -13.07501 -12.95221 -12.82812 -12.47720 -12.41178 -12.21325 -12.13433 -12.00232 -11.93766 -11.89388 -11.62919 -11.53658 -11.48000 -11.38133 -11.36587 -11.26235 -11.13146 -10.82813 -10.65608 -10.62162 -10.12136 -8.51976 -8.09453 -5.63804 1.31724 1.40080 1.52073 1.54289 1.83421 2.45111 2.96754 3.15044 3.41912 3.69037 3.70338 3.75429 3.89399 3.90982 4.01895 4.15279 4.15955 4.19664 4.24197 4.26399 4.34258 4.42039 4.46573 4.51417 4.57139 4.57344 4.68518 4.72112 4.74169 4.79972 4.83021 4.83469 4.89597 4.89881 4.98172 5.03531 5.05227 5.10540 5.18827 5.21801 5.24371 5.28624 5.32815 5.41986 5.44203 5.46421 5.49781 5.51453 5.67475 6.02868 6.09040 6.39709 6.53720 6.93978 7.18695 7.60108 8.33486 9.04671 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.001730 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.413338 B =16180.392329 C =17303.461404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.025 4.025 3 Si 0.949 3.051 4 H -0.290 1.290 5 H -0.314 1.314 6 H -0.251 1.251 7 C -0.230 4.230 8 H 0.072 0.928 9 N -0.621 5.621 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.033 0.967 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.132 3.868 18 N -0.717 5.717 19 C 0.507 3.493 20 O -0.578 6.578 21 C 0.047 3.953 22 O -0.394 6.394 23 C 0.063 3.937 24 C -0.094 4.094 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.127 4.127 28 C -0.118 4.118 29 H 0.260 0.740 30 H 0.017 0.983 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.415 0.585 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.071 0.929 53 H 0.061 0.939 54 H 0.069 0.931 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 -18.063 10.832 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.221 4.221 3 Si 0.780 3.220 4 H -0.217 1.217 5 H -0.244 1.244 6 H -0.175 1.175 7 C -0.359 4.359 8 H 0.090 0.910 9 N -0.348 5.348 10 C -0.019 4.019 11 C -0.168 4.168 12 C -0.153 4.153 13 C 0.043 3.957 14 H 0.051 0.949 15 C -0.149 4.149 16 C -0.164 4.164 17 C 0.008 3.992 18 N -0.370 5.370 19 C 0.294 3.706 20 O -0.457 6.457 21 C -0.032 4.032 22 O -0.313 6.313 23 C -0.013 4.013 24 C -0.113 4.113 25 C -0.151 4.151 26 C -0.160 4.160 27 C -0.164 4.164 28 C -0.155 4.155 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.251 0.749 43 H 0.120 0.880 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.088 0.912 52 H 0.090 0.910 53 H 0.080 0.920 54 H 0.088 0.912 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.019 -18.715 10.358 21.414 hybrid contribution -0.597 1.655 -0.170 1.768 sum 0.422 -17.060 10.188 19.875 Atomic orbital electron populations 1.69872 1.07259 1.27067 1.55836 1.26272 0.95778 1.01308 0.98714 0.85726 0.79370 0.80154 0.76790 1.21727 1.24372 1.17468 1.18762 0.81173 0.92520 1.43468 0.91045 1.44893 1.01897 1.52310 1.35744 1.22096 0.92766 0.94029 0.93026 1.22760 0.95477 0.98026 1.00522 1.22595 0.95434 0.96396 1.00893 1.21302 0.89292 0.90821 0.94334 0.94895 1.21813 0.96924 0.96820 0.99294 1.21931 1.00664 0.92600 1.01199 1.21298 0.87051 0.95840 0.95000 1.45937 1.29753 1.07828 1.53501 1.20917 0.86499 0.82315 0.80884 1.90681 1.56609 1.50239 1.48173 1.22285 0.95749 0.83886 1.01319 1.87974 1.48479 1.20303 1.74546 1.22839 0.87502 0.94876 0.96048 1.22011 0.96449 0.92615 1.00216 1.22115 0.95734 0.97359 0.99935 1.22130 0.95771 0.97035 1.01060 1.22386 0.96045 0.96391 1.01605 1.22512 0.97264 0.96199 0.99549 0.93107 0.96466 0.95076 0.92279 0.88618 0.89111 0.89915 0.90126 0.93410 0.91387 0.91348 0.91512 0.93538 0.74880 0.88007 0.87237 0.91879 0.91435 0.91492 0.91037 0.90500 0.90901 0.91167 0.90985 0.91978 0.91249 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.08 13.97 21.65 0.30 -57.78 16 2 C -0.02 -1.41 5.49 84.86 0.47 -0.94 16 3 Si 0.95 46.33 24.81 68.60 1.70 48.03 16 4 H -0.29 -13.99 6.97 99.48 0.69 -13.29 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 6 H -0.25 -11.44 6.21 99.48 0.62 -10.82 16 7 C -0.23 -12.27 9.67 84.03 0.81 -11.46 16 8 H 0.07 4.04 5.09 -2.91 -0.01 4.03 16 9 N -0.62 -27.71 2.57 -667.46 -1.72 -29.43 16 10 C 0.10 4.23 6.08 86.79 0.53 4.76 16 11 C -0.13 -3.95 7.03 31.99 0.22 -3.73 16 12 C -0.12 -3.15 6.45 31.78 0.20 -2.94 16 13 C 0.15 5.20 3.19 45.34 0.14 5.34 16 14 H 0.03 1.22 8.03 -2.39 -0.02 1.20 16 15 C -0.11 -3.41 4.67 30.59 0.14 -3.27 16 16 C -0.13 -4.05 4.97 30.59 0.15 -3.90 16 17 C 0.13 3.93 5.67 86.38 0.49 4.42 16 18 N -0.72 -19.30 5.56 -463.07 -2.57 -21.87 16 19 C 0.51 14.93 7.91 87.66 0.69 15.62 16 20 O -0.58 -22.62 16.50 16.03 0.26 -22.35 16 21 C 0.05 0.99 6.42 71.24 0.46 1.44 16 22 O -0.39 -9.93 9.79 -129.94 -1.27 -11.20 16 23 C 0.06 1.08 5.22 71.98 0.38 1.46 16 24 C -0.09 -1.59 3.13 -9.69 -0.03 -1.62 16 25 C -0.11 -1.35 6.37 31.32 0.20 -1.15 16 26 C -0.12 -1.35 6.80 31.32 0.21 -1.14 16 27 C -0.13 -1.71 6.83 31.67 0.22 -1.50 16 28 C -0.12 -2.03 6.26 31.91 0.20 -1.84 16 29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.02 0.77 3.63 -2.39 -0.01 0.76 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.87 7.57 -2.38 -0.02 1.86 16 33 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.00 7.85 -2.39 -0.02 1.98 16 36 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 2.72 4.67 -2.39 -0.01 2.71 16 39 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.41 9.29 8.47 -92.70 -0.79 8.51 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 0.92 8.02 -2.39 -0.02 0.90 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.08 0.75 7.84 -2.39 -0.02 0.74 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 54 H 0.07 1.13 7.97 -2.39 -0.02 1.11 16 55 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -73.16 419.54 2.16 -71.00 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.03 Total: 24.04 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.49 Total: -0.43 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -3.99 Total: -109.08 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -1.01 Total: -33.56 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.70 Total: 48.03 kcal Total: -73.16 2.16 -71.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713432985.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.333 kcal (2) G-P(sol) polarization free energy of solvation -73.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds