Wall clock time and date at job start Tue Mar 31 2020 21:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99794 * 2 1 4 4 H 1.48490 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46899 * 299.99929 * 3 2 1 6 6 H 1.48503 * 109.47142 * 59.99653 * 3 2 1 7 7 C 1.38805 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00295 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64585 * 345.70193 * 9 7 2 11 11 C 1.54902 * 104.83146 * 204.16234 * 10 9 7 12 12 C 1.55160 * 101.58356 * 322.98753 * 11 10 9 13 13 C 1.47016 * 125.65401 * 165.74109 * 9 7 2 14 14 H 1.08997 * 109.88151 * 59.33443 * 13 9 7 15 15 C 1.53008 * 109.88155 * 298.32732 * 13 9 7 16 16 C 1.53003 * 109.47043 * 174.64729 * 15 13 9 17 17 C 1.52995 * 109.46990 * 185.06575 * 16 15 13 18 18 N 1.46504 * 109.47122 * 180.02562 * 17 16 15 19 19 C 1.34779 * 119.99796 * 180.02562 * 18 17 16 20 20 O 1.21279 * 120.00214 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99559 * 179.97438 * 19 18 17 22 22 O 1.42903 * 109.46824 * 179.97438 * 21 19 18 23 23 C 1.42901 * 113.99867 * 179.97438 * 22 21 19 24 24 C 1.52998 * 109.46886 * 179.97438 * 23 22 21 25 25 C 1.54268 * 110.48354 * 184.99788 * 24 23 22 26 26 C 1.53873 * 106.64185 * 217.73619 * 25 24 23 27 27 C 1.54272 * 106.59850 * 359.97438 * 26 25 24 28 28 C 1.54884 * 104.19512 * 23.60550 * 27 26 25 29 29 H 0.96993 * 120.00374 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36606 * 323.00563 * 10 9 7 31 31 H 1.09001 * 110.36510 * 85.32336 * 10 9 7 32 32 H 1.08996 * 111.00478 * 81.06880 * 11 10 9 33 33 H 1.09003 * 111.00382 * 204.87596 * 11 10 9 34 34 H 1.08993 * 110.71999 * 277.13939 * 12 11 10 35 35 H 1.09003 * 110.71497 * 153.86667 * 12 11 10 36 36 H 1.08998 * 109.47220 * 54.64569 * 15 13 9 37 37 H 1.09003 * 109.46588 * 294.64467 * 15 13 9 38 38 H 1.09000 * 109.46983 * 65.06768 * 16 15 13 39 39 H 1.08997 * 109.47085 * 305.07080 * 16 15 13 40 40 H 1.08992 * 109.47394 * 60.00123 * 17 16 15 41 41 H 1.09008 * 109.47222 * 300.00053 * 17 16 15 42 42 H 0.97000 * 119.99640 * 359.97438 * 18 17 16 43 43 H 1.09000 * 109.47113 * 59.99909 * 21 19 18 44 44 H 1.08991 * 109.46961 * 299.99690 * 21 19 18 45 45 H 1.09001 * 109.46833 * 60.00462 * 23 22 21 46 46 H 1.09000 * 109.46964 * 299.99845 * 23 22 21 47 47 H 1.08995 * 110.54586 * 307.61472 * 24 23 22 48 48 H 1.09006 * 110.02803 * 98.43060 * 25 24 23 49 49 H 1.08993 * 110.03469 * 337.05040 * 25 24 23 50 50 H 1.09001 * 110.03273 * 119.25821 * 26 25 24 51 51 H 1.08992 * 110.03829 * 240.69451 * 26 25 24 52 52 H 1.08998 * 110.48627 * 142.28746 * 27 26 25 53 53 H 1.08998 * 110.48448 * 264.93209 * 27 26 25 54 54 H 1.09005 * 110.75937 * 80.37617 * 28 27 26 55 55 H 1.09006 * 110.76036 * 203.56218 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0016 10 6 -0.1091 -2.5516 0.2981 11 6 -0.2505 -4.0182 0.7761 12 6 0.7658 -4.7451 -0.1439 13 6 1.9000 -3.7092 -0.2920 14 1 2.7013 -3.9301 0.4131 15 6 2.4440 -3.7341 -1.7219 16 6 3.1569 -5.0643 -1.9733 17 6 3.8090 -5.0399 -3.3571 18 7 4.4911 -6.3138 -3.5981 19 6 5.1408 -6.5210 -4.7606 20 8 5.1604 -5.6530 -5.6074 21 6 5.8429 -7.8312 -5.0082 22 8 6.4519 -7.8084 -6.3008 23 6 7.1485 -9.0102 -6.6363 24 6 7.7564 -8.8740 -8.0337 25 6 8.4077 -10.2024 -8.4709 26 6 9.6862 -9.8331 -9.2434 27 6 9.7677 -8.2925 -9.2498 28 6 8.9305 -7.8628 -8.0197 29 1 -0.4850 0.8399 0.0004 30 1 -0.4141 -1.8643 1.0872 31 1 -0.7034 -2.3864 -0.6005 32 1 0.0315 -4.1165 1.8243 33 1 -1.2625 -4.3875 0.6097 34 1 0.3183 -4.9682 -1.1123 35 1 1.1337 -5.6546 0.3310 36 1 3.1482 -2.9132 -1.8571 37 1 1.6192 -3.6250 -2.4262 38 1 2.4337 -5.8785 -1.9267 39 1 3.9232 -5.2151 -1.2130 40 1 4.5321 -4.2257 -3.4037 41 1 3.0425 -4.8890 -4.1174 42 1 4.4757 -7.0079 -2.9206 43 1 5.1197 -8.6454 -4.9620 44 1 6.6091 -7.9822 -4.2478 45 1 6.4527 -9.8491 -6.6234 46 1 7.9422 -9.1850 -5.9099 47 1 6.9972 -8.5665 -8.7528 48 1 7.7275 -10.7565 -9.1178 49 1 8.6601 -10.8004 -7.5954 50 1 10.5592 -10.2511 -8.7422 51 1 9.6266 -10.2079 -10.2651 52 1 10.8015 -7.9648 -9.1411 53 1 9.3336 -7.8914 -10.1656 54 1 9.5124 -7.9603 -7.1031 55 1 8.5665 -6.8421 -8.1375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713432986.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:18 Heat of formation + Delta-G solvation = -111.236290 kcal Electronic energy + Delta-G solvation = -28633.611881 eV Core-core repulsion = 24668.970628 eV Total energy + Delta-G solvation = -3964.641253 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.85870 -39.62167 -39.41270 -37.87457 -36.62808 -34.69633 -33.70569 -31.65555 -31.23690 -30.06250 -29.54549 -28.26529 -26.58730 -25.48191 -24.96015 -22.70955 -21.85996 -21.75792 -21.40075 -20.80975 -20.62622 -18.72464 -18.25694 -17.80485 -17.40736 -16.96324 -16.86212 -16.50344 -16.18964 -16.04959 -15.89755 -15.66481 -15.32011 -14.95690 -14.35538 -14.23470 -14.21009 -13.90034 -13.69852 -13.56901 -13.41355 -13.10645 -12.99434 -12.80170 -12.76980 -12.65754 -12.23589 -12.20770 -12.00209 -11.96372 -11.94369 -11.82290 -11.67731 -11.61741 -11.54232 -11.52845 -11.30611 -11.26090 -11.15438 -10.86227 -10.65975 -10.62737 -10.13929 -8.77242 -7.85577 -5.20960 1.43050 1.44545 1.54066 1.56751 1.82466 2.49253 2.97669 3.33179 3.68056 3.70467 3.71961 3.78143 3.90816 3.96795 4.01888 4.17506 4.21660 4.25353 4.28909 4.36062 4.36770 4.42941 4.44581 4.52596 4.57007 4.63438 4.68589 4.74108 4.79953 4.83593 4.83969 4.87099 4.89845 5.00494 5.05293 5.05531 5.09850 5.14934 5.24072 5.25322 5.32237 5.34680 5.40393 5.46538 5.49606 5.51324 5.53561 5.68976 5.72047 5.80806 6.12750 6.28248 6.58511 7.13277 7.24958 7.83206 8.50028 9.26090 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.001551 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.394690 B =18049.442542 C =19274.346405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.620 5.620 10 C 0.173 3.827 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.038 0.962 15 C -0.114 4.114 16 C -0.106 4.106 17 C 0.125 3.875 18 N -0.710 5.710 19 C 0.502 3.498 20 O -0.583 6.583 21 C 0.049 3.951 22 O -0.399 6.399 23 C 0.066 3.934 24 C -0.095 4.095 25 C -0.112 4.112 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.245 0.755 30 H 0.029 0.971 31 H -0.010 1.010 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.035 0.965 37 H 0.040 0.960 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.421 0.579 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.069 0.931 53 H 0.060 0.940 54 H 0.069 0.931 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.909 -28.519 -10.734 34.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.344 5.344 10 C 0.048 3.952 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.046 3.954 14 H 0.055 0.945 15 C -0.155 4.155 16 C -0.144 4.144 17 C 0.001 3.999 18 N -0.364 5.364 19 C 0.289 3.711 20 O -0.462 6.462 21 C -0.030 4.030 22 O -0.319 6.319 23 C -0.010 4.010 24 C -0.114 4.114 25 C -0.150 4.150 26 C -0.161 4.161 27 C -0.166 4.166 28 C -0.157 4.157 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.008 0.992 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.259 0.741 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.091 0.909 51 H 0.087 0.913 52 H 0.088 0.912 53 H 0.078 0.922 54 H 0.088 0.912 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.887 -27.546 -11.446 33.796 hybrid contribution -0.044 1.550 0.218 1.565 sum 15.843 -25.996 -11.228 32.448 Atomic orbital electron populations 1.70155 1.06288 1.25029 1.58405 1.25657 0.96489 1.00910 1.02879 0.85138 0.78363 0.80066 0.76609 1.19068 1.22322 1.21814 1.19335 0.90708 0.83778 1.42032 0.90615 1.44879 1.06424 1.02549 1.80588 1.21219 0.84661 0.93304 0.96005 1.22880 0.99758 0.95623 0.99296 1.22587 0.95092 0.97345 0.99788 1.21237 0.95230 0.85366 0.93613 0.94470 1.21846 0.98889 0.96679 0.98044 1.21622 1.00298 0.97901 0.94569 1.21242 0.95518 0.85303 0.97822 1.45755 1.53754 1.18565 1.18342 1.21095 0.78717 0.89701 0.81561 1.90729 1.61792 1.47453 1.46264 1.22318 0.98903 0.94255 0.87540 1.87995 1.71288 1.39292 1.33299 1.22812 0.95660 0.86125 0.96419 1.22017 0.97114 0.96811 0.95463 1.22104 0.96765 0.95434 1.00662 1.22133 0.97959 0.95170 1.00791 1.22395 1.00081 0.96384 0.97747 1.22519 0.96208 0.98176 0.98755 0.94551 0.95214 0.99207 0.91730 0.90129 0.91099 0.88275 0.94648 0.94112 0.88851 0.89802 0.93622 0.93170 0.74073 0.86984 0.87168 0.91311 0.91418 0.91592 0.90919 0.90231 0.90903 0.91257 0.91193 0.92160 0.91220 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 10.56 21.65 0.23 -58.22 16 2 C -0.07 -3.86 5.47 84.86 0.46 -3.39 16 3 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.23 -12.92 9.71 84.03 0.82 -12.11 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.62 -31.52 3.13 -668.27 -2.09 -33.61 16 10 C 0.17 8.61 5.42 86.85 0.47 9.08 16 11 C -0.14 -4.84 7.08 31.98 0.23 -4.61 16 12 C -0.11 -3.30 5.72 31.78 0.18 -3.12 16 13 C 0.15 5.74 3.16 45.34 0.14 5.88 16 14 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 15 C -0.11 -3.96 4.72 30.60 0.14 -3.81 16 16 C -0.11 -2.38 5.10 30.59 0.16 -2.23 16 17 C 0.13 3.15 5.67 86.38 0.49 3.64 16 18 N -0.71 -13.19 5.56 -463.05 -2.57 -15.77 16 19 C 0.50 12.00 7.91 87.66 0.69 12.69 16 20 O -0.58 -21.34 16.50 16.01 0.26 -21.07 16 21 C 0.05 0.71 6.42 71.24 0.46 1.17 16 22 O -0.40 -8.37 9.79 -129.94 -1.27 -9.64 16 23 C 0.07 0.84 5.22 71.98 0.38 1.21 16 24 C -0.10 -1.34 3.13 -9.69 -0.03 -1.37 16 25 C -0.11 -1.01 6.37 31.32 0.20 -0.81 16 26 C -0.12 -1.13 6.80 31.32 0.21 -0.92 16 27 C -0.13 -1.60 6.83 31.67 0.22 -1.38 16 28 C -0.12 -1.87 6.25 31.91 0.20 -1.67 16 29 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.03 1.68 6.90 -2.39 -0.02 1.66 16 31 H -0.01 -0.56 8.07 -2.39 -0.02 -0.58 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 2.01 7.76 -2.39 -0.02 2.00 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 37 H 0.04 1.54 8.01 -2.39 -0.02 1.52 16 38 H 0.09 1.65 7.65 -2.39 -0.02 1.64 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.42 4.07 8.47 -92.71 -0.79 3.28 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.63 8.02 -2.39 -0.02 0.61 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 49 H 0.08 0.51 7.84 -2.39 -0.02 0.49 16 50 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.07 1.01 7.97 -2.38 -0.02 1.00 16 55 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -80.49 430.47 2.05 -78.45 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.04 Total: 12.51 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.42 Total: -1.76 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -4.43 Total: -107.59 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.01 Total: -30.72 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -80.49 2.05 -78.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713432986.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.787 kcal (2) G-P(sol) polarization free energy of solvation -80.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds