Wall clock time and date at job start Tue Mar 31 2020 20:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36939 * 120.00396 * 2 1 4 4 H 1.07995 * 119.99827 * 321.78600 * 3 2 1 5 5 C 1.38807 * 120.00110 * 141.77938 * 3 2 1 6 6 N 1.31621 * 119.99978 * 157.37792 * 5 3 2 7 7 Si 1.86800 * 120.00101 * 337.37901 * 5 3 2 8 8 H 1.48508 * 109.47211 * 95.66860 * 7 5 3 9 9 H 1.48503 * 109.47274 * 215.66383 * 7 5 3 10 10 H 1.48494 * 109.47040 * 335.66655 * 7 5 3 11 11 C 1.46502 * 119.99833 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47172 * 90.00097 * 11 2 1 13 13 H 1.09003 * 110.88724 * 308.87889 * 12 11 2 14 14 C 1.55156 * 111.00486 * 72.80033 * 12 11 2 15 15 C 1.54324 * 102.94261 * 153.57555 * 14 12 11 16 16 N 1.47023 * 107.27228 * 337.81266 * 15 14 12 17 17 C 1.34770 * 125.65172 * 178.90426 * 16 15 14 18 18 O 1.21280 * 120.00413 * 180.02562 * 17 16 15 19 19 C 1.50703 * 119.99827 * 0.04021 * 17 16 15 20 20 N 1.46506 * 109.47104 * 180.02562 * 19 17 16 21 21 C 1.34778 * 120.00029 * 179.97438 * 20 19 17 22 22 O 1.21593 * 119.99793 * 359.97438 * 21 20 19 23 23 N 1.34770 * 120.00195 * 179.97438 * 21 20 19 24 24 C 1.47026 * 125.64687 * 359.69106 * 23 21 20 25 25 C 1.54313 * 107.27589 * 180.97136 * 24 23 21 26 26 C 1.55153 * 102.86466 * 22.52523 * 25 24 23 27 27 C 1.47429 * 125.65152 * 180.02562 * 23 21 20 28 28 C 1.47425 * 108.70194 * 358.93350 * 16 15 14 29 29 H 1.08997 * 109.47401 * 265.67593 * 1 2 3 30 30 H 1.09000 * 109.47077 * 25.67863 * 1 2 3 31 31 H 1.09001 * 109.47231 * 145.67633 * 1 2 3 32 32 H 0.97001 * 119.99941 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47131 * 210.00177 * 11 2 1 34 34 H 1.08999 * 109.47356 * 329.99851 * 11 2 1 35 35 H 1.08993 * 110.72417 * 271.94345 * 14 12 11 36 36 H 1.09005 * 110.72047 * 35.21852 * 14 12 11 37 37 H 1.08995 * 109.88633 * 218.39100 * 15 14 12 38 38 H 1.08999 * 109.87994 * 97.22507 * 15 14 12 39 39 H 1.09000 * 109.47129 * 299.99792 * 19 17 16 40 40 H 1.08996 * 109.47536 * 60.00162 * 19 17 16 41 41 H 0.96999 * 119.99830 * 359.97438 * 20 19 17 42 42 H 1.09004 * 109.87999 * 300.51393 * 24 23 21 43 43 H 1.08992 * 109.88125 * 61.67583 * 24 23 21 44 44 H 1.09004 * 110.92409 * 264.10766 * 25 24 23 45 45 H 1.08999 * 110.74577 * 140.85293 * 25 24 23 46 46 H 1.09000 * 111.00709 * 206.23020 * 26 25 24 47 47 H 1.08997 * 111.03903 * 82.39385 * 26 25 24 48 48 H 1.09002 * 110.36188 * 274.67304 * 27 23 21 49 49 H 1.08994 * 110.36342 * 36.99120 * 27 23 21 50 50 H 1.09000 * 110.37250 * 265.29191 * 28 16 15 51 51 H 1.08999 * 110.45744 * 143.01590 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7833 2.0209 -0.5786 5 6 3.3146 1.3147 0.7437 6 7 4.1995 2.2359 0.4264 7 14 3.6264 0.1806 2.1950 8 1 4.4690 -0.9617 1.7585 9 1 4.3272 0.9309 3.2679 10 1 2.3311 -0.3290 2.7122 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 1 1.5293 -1.6962 -2.0228 14 6 3.5415 -0.8285 -2.1100 15 6 4.1344 -1.7650 -3.1838 16 7 3.8374 -3.1448 -2.7718 17 6 4.1700 -4.2575 -3.4555 18 8 3.8722 -5.3492 -3.0190 19 6 4.9121 -4.1454 -4.7623 20 7 5.1530 -5.4853 -5.3037 21 6 5.8051 -5.6320 -6.4740 22 8 6.1932 -4.6523 -7.0807 23 7 6.0271 -6.8646 -6.9718 24 6 5.6199 -8.1292 -6.3420 25 6 6.1061 -9.2736 -7.2559 26 6 7.2589 -8.6112 -8.0555 27 6 6.7246 -7.1685 -8.2346 28 6 3.1149 -3.1094 -1.4872 29 1 -0.3634 -0.0775 1.0247 30 1 -0.3633 0.9262 -0.4453 31 1 -0.3634 -0.8487 -0.5795 32 1 5.0138 2.3256 0.9459 33 1 3.1498 -1.1387 0.5134 34 1 1.6083 -2.0286 0.5129 35 1 3.0957 0.0530 -2.5706 36 1 4.3034 -0.5424 -1.3847 37 1 5.2130 -1.6210 -3.2467 38 1 3.6738 -1.5595 -4.1500 39 1 4.3162 -3.5695 -5.4703 40 1 5.8653 -3.6433 -4.5969 41 1 4.8430 -6.2668 -4.8199 42 1 6.0794 -8.2178 -5.3575 43 1 4.5344 -8.1654 -6.2513 44 1 5.3110 -9.6016 -7.9255 45 1 6.4783 -10.1093 -6.6633 46 1 7.3964 -9.0997 -9.0202 47 1 8.1859 -8.6158 -7.4821 48 1 6.0289 -7.1231 -9.0726 49 1 7.5506 -6.4742 -8.3883 50 1 3.8114 -3.2257 -0.6568 51 1 2.3548 -3.8900 -1.4560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713752236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:39 Heat of formation + Delta-G solvation = -27.814064 kcal Electronic energy + Delta-G solvation = -29752.042379 eV Core-core repulsion = 25687.478241 eV Total energy + Delta-G solvation = -4064.564137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.66091 -39.88578 -38.02703 -37.52443 -35.60392 -34.57342 -32.22374 -31.85975 -31.32562 -29.49131 -29.17017 -27.99488 -26.33884 -25.26892 -23.74429 -22.73910 -21.61459 -21.23833 -20.25897 -19.99078 -19.52011 -18.44978 -17.02376 -17.00465 -16.74481 -16.35784 -15.88590 -15.62483 -15.18673 -15.12551 -14.44417 -14.07121 -14.00546 -13.96752 -13.60741 -13.46318 -13.37375 -13.26877 -13.01005 -12.69525 -12.57489 -12.40193 -12.28190 -12.12485 -11.83126 -11.81017 -11.66570 -11.48869 -11.22433 -11.01746 -10.82688 -10.54449 -10.45805 -10.36953 -10.20427 -9.98668 -9.78014 -9.57895 -9.42965 -8.84635 -8.59888 -8.56388 -6.85850 -6.05422 -3.46394 2.19358 2.48837 2.96484 3.01046 3.25066 3.43368 3.48293 3.72156 4.12125 4.20565 4.35342 4.44867 4.46806 4.81365 4.81946 4.93196 5.00185 5.12824 5.14834 5.19948 5.22591 5.27451 5.38676 5.39022 5.42113 5.45394 5.50983 5.51629 5.68209 5.69153 5.80359 5.88861 5.91591 6.10534 6.13979 6.20599 6.25414 6.30489 6.43150 6.51328 6.66299 6.68773 6.75468 6.84271 6.94945 7.50400 7.69161 7.99453 8.01745 8.32439 8.34102 8.93190 9.65738 10.07544 11.09793 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.002075 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.241642 B =13492.802256 C =13722.070639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.610 5.610 3 C -0.266 4.266 4 H 0.078 0.922 5 C 0.039 3.961 6 N -0.896 5.896 7 Si 0.871 3.129 8 H -0.285 1.285 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.148 3.852 12 C -0.112 4.112 13 H 0.077 0.923 14 C -0.104 4.104 15 C 0.090 3.910 16 N -0.607 5.607 17 C 0.522 3.478 18 O -0.550 6.550 19 C 0.124 3.876 20 N -0.732 5.732 21 C 0.725 3.275 22 O -0.589 6.589 23 N -0.638 5.638 24 C 0.096 3.904 25 C -0.130 4.130 26 C -0.135 4.135 27 C 0.124 3.876 28 C 0.108 3.892 29 H 0.006 0.994 30 H 0.045 0.955 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.407 0.593 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 -21.064 -14.535 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.334 5.334 3 C -0.394 4.394 4 H 0.096 0.904 5 C -0.162 4.162 6 N -0.537 5.537 7 Si 0.701 3.299 8 H -0.213 1.213 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.022 3.978 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.141 4.141 15 C -0.033 4.033 16 N -0.340 5.340 17 C 0.310 3.690 18 O -0.429 6.429 19 C -0.004 4.004 20 N -0.391 5.391 21 C 0.427 3.573 22 O -0.467 6.467 23 N -0.377 5.377 24 C -0.027 4.027 25 C -0.168 4.168 26 C -0.173 4.173 27 C 0.001 3.999 28 C -0.015 4.015 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.245 0.755 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.303 -20.753 -14.694 25.642 hybrid contribution 0.157 -0.876 1.184 1.481 sum 3.461 -21.629 -13.510 25.736 Atomic orbital electron populations 1.21084 0.84579 0.99042 0.97408 1.44016 1.00744 1.01917 1.86687 1.18731 1.06087 0.90735 1.23860 0.90434 1.25443 0.96965 0.96296 0.97459 1.69869 1.08643 1.35817 1.39385 0.87045 0.78000 0.80147 0.84731 1.21345 1.22921 1.19507 1.21084 0.96651 0.87955 0.92131 1.23031 0.97989 0.91612 1.00779 0.90427 1.22499 0.98138 0.96923 0.96576 1.22396 1.00642 0.80600 0.99648 1.48500 1.56143 1.06235 1.23091 1.20063 0.79787 0.83466 0.85697 1.90664 1.56044 1.26280 1.69962 1.20866 1.01492 0.84878 0.93117 1.44755 1.62050 1.09233 1.23035 1.15270 0.79022 0.82243 0.80768 1.90946 1.57618 1.36865 1.61278 1.47524 1.61645 1.03965 1.24560 1.22039 1.00020 0.83561 0.97102 1.22601 0.98587 0.97054 0.98511 1.22814 0.98426 0.94800 1.01271 1.22083 0.96398 0.96074 0.85304 1.22410 0.95527 0.99008 0.84515 0.97560 0.93626 0.95504 0.92712 0.92530 0.94039 0.89045 0.89932 0.91253 0.91322 0.88397 0.88387 0.75528 0.91395 0.91395 0.90362 0.89852 0.89588 0.90475 0.91560 0.90241 0.91424 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.35 10.70 59.84 0.64 2.99 16 2 N -0.61 -13.53 2.45 -181.13 -0.44 -13.97 16 3 C -0.27 -6.88 9.21 -15.06 -0.14 -7.02 16 4 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 5 C 0.04 1.06 5.29 -17.43 -0.09 0.96 16 6 N -0.90 -25.65 13.97 55.49 0.78 -24.87 16 7 Si 0.87 21.27 25.09 -169.99 -4.26 17.00 16 8 H -0.29 -6.72 6.68 56.52 0.38 -6.34 16 9 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 C 0.15 2.95 4.05 -4.04 -0.02 2.93 16 12 C -0.11 -1.90 3.26 -88.47 -0.29 -2.19 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.10 -1.78 5.73 -24.90 -0.14 -1.92 16 15 C 0.09 1.23 6.49 -3.06 -0.02 1.21 16 16 N -0.61 -8.86 3.33 -170.52 -0.57 -9.43 16 17 C 0.52 7.51 7.92 -10.99 -0.09 7.42 16 18 O -0.55 -9.16 15.92 5.56 0.09 -9.07 16 19 C 0.12 1.54 5.35 -5.19 -0.03 1.51 16 20 N -0.73 -8.98 5.49 -66.41 -0.36 -9.34 16 21 C 0.73 9.62 8.49 -86.92 -0.74 8.88 16 22 O -0.59 -9.82 16.60 5.28 0.09 -9.73 16 23 N -0.64 -6.40 3.33 -176.25 -0.59 -6.99 16 24 C 0.10 0.67 6.14 -3.07 -0.02 0.65 16 25 C -0.13 -0.59 6.95 -24.90 -0.17 -0.77 16 26 C -0.13 -0.66 7.08 -24.60 -0.17 -0.84 16 27 C 0.12 0.99 6.91 -2.54 -0.02 0.97 16 28 C 0.11 1.68 6.37 -2.53 -0.02 1.67 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 31 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.06 1.25 3.22 -51.93 -0.17 1.08 16 34 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.08 1.64 7.92 -51.93 -0.41 1.23 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.41 4.72 6.42 -40.82 -0.26 4.46 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.71 8.04 -51.93 -0.42 0.30 16 50 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 51 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -32.40 403.20 -9.36 -41.76 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -8.85 Total: 2.09 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: -1.31 Total: 16.47 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -1.19 Total: -64.60 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.26 Total: 17.00 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.40 -9.36 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713752236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.948 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds