Wall clock time and date at job start Tue Mar 31 2020 20:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36939 * 120.00396 * 2 1 4 4 H 1.07995 * 119.99827 * 321.78600 * 3 2 1 5 5 C 1.38807 * 120.00110 * 141.77938 * 3 2 1 6 6 N 1.31621 * 119.99978 * 157.37792 * 5 3 2 7 7 Si 1.86800 * 120.00101 * 337.37901 * 5 3 2 8 8 H 1.48508 * 109.47211 * 95.66860 * 7 5 3 9 9 H 1.48503 * 109.47274 * 215.66383 * 7 5 3 10 10 H 1.48494 * 109.47040 * 335.66655 * 7 5 3 11 11 C 1.46502 * 119.99833 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47172 * 90.00097 * 11 2 1 13 13 H 1.09003 * 110.88724 * 308.87889 * 12 11 2 14 14 C 1.55156 * 111.00486 * 72.80033 * 12 11 2 15 15 C 1.54324 * 102.94261 * 153.57555 * 14 12 11 16 16 N 1.47023 * 107.27228 * 337.81266 * 15 14 12 17 17 C 1.34770 * 125.65172 * 178.90426 * 16 15 14 18 18 O 1.21280 * 120.00413 * 180.02562 * 17 16 15 19 19 C 1.50703 * 119.99827 * 0.04021 * 17 16 15 20 20 N 1.46506 * 109.47104 * 180.02562 * 19 17 16 21 21 C 1.34778 * 120.00029 * 179.97438 * 20 19 17 22 22 O 1.21593 * 119.99793 * 359.97438 * 21 20 19 23 23 N 1.34770 * 120.00195 * 179.97438 * 21 20 19 24 24 C 1.47026 * 125.64687 * 359.69106 * 23 21 20 25 25 C 1.54313 * 107.27589 * 180.97136 * 24 23 21 26 26 C 1.55153 * 102.86466 * 22.52523 * 25 24 23 27 27 C 1.47429 * 125.65152 * 180.02562 * 23 21 20 28 28 C 1.47425 * 108.70194 * 358.93350 * 16 15 14 29 29 H 1.08997 * 109.47401 * 265.67593 * 1 2 3 30 30 H 1.09000 * 109.47077 * 25.67863 * 1 2 3 31 31 H 1.09001 * 109.47231 * 145.67633 * 1 2 3 32 32 H 0.97001 * 119.99941 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47131 * 210.00177 * 11 2 1 34 34 H 1.08999 * 109.47356 * 329.99851 * 11 2 1 35 35 H 1.08993 * 110.72417 * 271.94345 * 14 12 11 36 36 H 1.09005 * 110.72047 * 35.21852 * 14 12 11 37 37 H 1.08995 * 109.88633 * 218.39100 * 15 14 12 38 38 H 1.08999 * 109.87994 * 97.22507 * 15 14 12 39 39 H 1.09000 * 109.47129 * 299.99792 * 19 17 16 40 40 H 1.08996 * 109.47536 * 60.00162 * 19 17 16 41 41 H 0.96999 * 119.99830 * 359.97438 * 20 19 17 42 42 H 1.09004 * 109.87999 * 300.51393 * 24 23 21 43 43 H 1.08992 * 109.88125 * 61.67583 * 24 23 21 44 44 H 1.09004 * 110.92409 * 264.10766 * 25 24 23 45 45 H 1.08999 * 110.74577 * 140.85293 * 25 24 23 46 46 H 1.09000 * 111.00709 * 206.23020 * 26 25 24 47 47 H 1.08997 * 111.03903 * 82.39385 * 26 25 24 48 48 H 1.09002 * 110.36188 * 274.67304 * 27 23 21 49 49 H 1.08994 * 110.36342 * 36.99120 * 27 23 21 50 50 H 1.09000 * 110.37250 * 265.29191 * 28 16 15 51 51 H 1.08999 * 110.45744 * 143.01590 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7833 2.0209 -0.5786 5 6 3.3146 1.3147 0.7437 6 7 4.1995 2.2359 0.4264 7 14 3.6264 0.1806 2.1950 8 1 4.4690 -0.9617 1.7585 9 1 4.3272 0.9309 3.2679 10 1 2.3311 -0.3290 2.7122 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 1 1.5293 -1.6962 -2.0228 14 6 3.5415 -0.8285 -2.1100 15 6 4.1344 -1.7650 -3.1838 16 7 3.8374 -3.1448 -2.7718 17 6 4.1700 -4.2575 -3.4555 18 8 3.8722 -5.3492 -3.0190 19 6 4.9121 -4.1454 -4.7623 20 7 5.1530 -5.4853 -5.3037 21 6 5.8051 -5.6320 -6.4740 22 8 6.1932 -4.6523 -7.0807 23 7 6.0271 -6.8646 -6.9718 24 6 5.6199 -8.1292 -6.3420 25 6 6.1061 -9.2736 -7.2559 26 6 7.2589 -8.6112 -8.0555 27 6 6.7246 -7.1685 -8.2346 28 6 3.1149 -3.1094 -1.4872 29 1 -0.3634 -0.0775 1.0247 30 1 -0.3633 0.9262 -0.4453 31 1 -0.3634 -0.8487 -0.5795 32 1 5.0138 2.3256 0.9459 33 1 3.1498 -1.1387 0.5134 34 1 1.6083 -2.0286 0.5129 35 1 3.0957 0.0530 -2.5706 36 1 4.3034 -0.5424 -1.3847 37 1 5.2130 -1.6210 -3.2467 38 1 3.6738 -1.5595 -4.1500 39 1 4.3162 -3.5695 -5.4703 40 1 5.8653 -3.6433 -4.5969 41 1 4.8430 -6.2668 -4.8199 42 1 6.0794 -8.2178 -5.3575 43 1 4.5344 -8.1654 -6.2513 44 1 5.3110 -9.6016 -7.9255 45 1 6.4783 -10.1093 -6.6633 46 1 7.3964 -9.0997 -9.0202 47 1 8.1859 -8.6158 -7.4821 48 1 6.0289 -7.1231 -9.0726 49 1 7.5506 -6.4742 -8.3883 50 1 3.8114 -3.2257 -0.6568 51 1 2.3548 -3.8900 -1.4560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713752236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:38 Heat of formation + Delta-G solvation = -49.393480 kcal Electronic energy + Delta-G solvation = -29752.978132 eV Core-core repulsion = 25687.478241 eV Total energy + Delta-G solvation = -4065.499891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65755 -40.96276 -39.18917 -38.46401 -37.21389 -35.62280 -33.87252 -33.07475 -32.52094 -30.47845 -30.05927 -29.07159 -28.01431 -26.76890 -24.60700 -23.88275 -22.99653 -22.07344 -21.44754 -21.17861 -20.56890 -19.38236 -18.79664 -17.92515 -17.71228 -17.55769 -17.16407 -16.79379 -16.64795 -16.11592 -15.74449 -15.52386 -15.15056 -14.98148 -14.81998 -14.55106 -14.38699 -14.26343 -14.11983 -14.04515 -13.76064 -13.62339 -13.60370 -13.25075 -13.22656 -13.16668 -12.66324 -12.49738 -12.22033 -12.18790 -12.15268 -11.95635 -11.72847 -11.60412 -11.59964 -11.50723 -11.28393 -11.18315 -10.58742 -10.44793 -9.79427 -9.60451 -8.70286 -8.14792 -5.51368 1.28249 1.30206 1.34820 1.43322 1.51892 1.93941 1.97582 2.44244 2.90714 3.06657 3.22424 3.43023 3.66719 3.69950 3.73178 3.86899 4.02945 4.06163 4.20261 4.25031 4.29594 4.32110 4.39144 4.47539 4.53721 4.59027 4.61763 4.73461 4.78339 4.80434 4.84596 4.90392 4.92762 4.98155 5.02580 5.09819 5.11495 5.14745 5.17423 5.19888 5.24007 5.35200 5.38707 5.50111 5.91522 5.99546 6.23033 6.34199 6.78195 6.86563 7.04060 7.37347 7.68302 8.11458 9.04318 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.002075 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.241642 B =13492.802256 C =13722.070639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.623 5.623 3 C -0.245 4.245 4 H 0.044 0.956 5 C -0.007 4.007 6 N -0.940 5.940 7 Si 0.924 3.076 8 H -0.274 1.274 9 H -0.314 1.314 10 H -0.264 1.264 11 C 0.144 3.856 12 C -0.102 4.102 13 H 0.087 0.913 14 C -0.101 4.101 15 C 0.099 3.901 16 N -0.608 5.608 17 C 0.528 3.472 18 O -0.572 6.572 19 C 0.130 3.870 20 N -0.728 5.728 21 C 0.718 3.282 22 O -0.630 6.630 23 N -0.639 5.639 24 C 0.088 3.912 25 C -0.121 4.121 26 C -0.125 4.125 27 C 0.114 3.886 28 C 0.114 3.886 29 H 0.012 0.988 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.260 0.740 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.411 0.589 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -24.271 -15.298 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.347 5.347 3 C -0.375 4.375 4 H 0.061 0.939 5 C -0.204 4.204 6 N -0.584 5.584 7 Si 0.754 3.246 8 H -0.201 1.201 9 H -0.243 1.243 10 H -0.189 1.189 11 C 0.018 3.982 12 C -0.124 4.124 13 H 0.106 0.894 14 C -0.140 4.140 15 C -0.023 4.023 16 N -0.340 5.340 17 C 0.317 3.683 18 O -0.452 6.452 19 C 0.002 3.998 20 N -0.387 5.387 21 C 0.420 3.580 22 O -0.512 6.512 23 N -0.376 5.376 24 C -0.034 4.034 25 C -0.159 4.159 26 C -0.163 4.163 27 C -0.008 4.008 28 C -0.009 4.009 29 H 0.030 0.970 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.249 0.751 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.656 -24.035 -15.460 28.701 hybrid contribution 0.272 0.118 1.362 1.394 sum 2.928 -23.917 -14.098 27.917 Atomic orbital electron populations 1.21186 0.82447 1.00330 0.98243 1.44158 1.02173 1.01464 1.86909 1.18540 1.05640 0.91294 1.22038 0.93878 1.25878 0.97151 0.97851 0.99499 1.69976 1.09399 1.38319 1.40661 0.86161 0.78018 0.78796 0.81580 1.20132 1.24293 1.18882 1.21143 0.95722 0.87402 0.93951 1.22827 0.98352 0.92320 0.98888 0.89425 1.22317 0.97535 0.97235 0.96864 1.22327 1.01455 0.79326 0.99206 1.48482 1.56099 1.06585 1.22837 1.20274 0.79294 0.82851 0.85917 1.90655 1.56948 1.27019 1.70606 1.20836 1.01553 0.85264 0.92153 1.44696 1.61868 1.09293 1.22843 1.15468 0.78969 0.82826 0.80752 1.90908 1.59347 1.38532 1.62381 1.47687 1.60913 1.03918 1.25120 1.22280 1.00387 0.83038 0.97705 1.22623 0.98633 0.96385 0.98273 1.22798 0.98310 0.92605 1.02553 1.22295 0.95986 0.97778 0.84734 1.22266 0.95628 0.98088 0.84901 0.97023 0.93981 0.92336 0.93041 0.94740 0.91699 0.90876 0.93172 0.89992 0.88987 0.87507 0.87885 0.75082 0.91236 0.91043 0.89258 0.88083 0.87359 0.90552 0.91107 0.91911 0.91996 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.38 10.70 127.77 1.37 5.74 16 2 N -0.62 -26.96 2.45 -726.96 -1.78 -28.75 16 3 C -0.25 -12.88 9.21 84.03 0.77 -12.11 16 4 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 5 C -0.01 -0.37 5.29 84.86 0.45 0.08 16 6 N -0.94 -55.49 13.97 21.65 0.30 -55.19 16 7 Si 0.92 44.29 25.09 68.60 1.72 46.01 16 8 H -0.27 -12.47 6.68 99.48 0.66 -11.81 16 9 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 10 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 11 C 0.14 5.45 4.05 86.38 0.35 5.80 16 12 C -0.10 -3.29 3.26 -9.40 -0.03 -3.32 16 13 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 14 C -0.10 -3.45 5.73 31.78 0.18 -3.27 16 15 C 0.10 2.55 6.49 86.73 0.56 3.12 16 16 N -0.61 -16.50 3.33 -811.80 -2.70 -19.20 16 17 C 0.53 14.15 7.92 87.66 0.69 14.85 16 18 O -0.57 -17.95 15.92 -3.03 -0.05 -17.99 16 19 C 0.13 3.01 5.35 85.63 0.46 3.47 16 20 N -0.73 -17.04 5.49 -482.28 -2.65 -19.68 16 21 C 0.72 18.63 8.49 179.06 1.52 20.15 16 22 O -0.63 -21.02 16.60 -4.01 -0.07 -21.08 16 23 N -0.64 -12.18 3.33 -829.81 -2.76 -14.94 16 24 C 0.09 1.07 6.14 86.72 0.53 1.60 16 25 C -0.12 -0.76 6.95 31.78 0.22 -0.53 16 26 C -0.12 -0.92 7.08 31.98 0.23 -0.70 16 27 C 0.11 1.71 6.91 86.85 0.60 2.31 16 28 C 0.11 3.31 6.37 86.86 0.55 3.87 16 29 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.04 1.51 8.00 -2.39 -0.02 1.49 16 31 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.26 14.80 8.31 -92.71 -0.77 14.02 16 33 H 0.03 1.48 3.22 -2.39 -0.01 1.47 16 34 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 35 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 36 H 0.05 2.03 7.92 -2.38 -0.02 2.02 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.41 8.99 6.42 -92.71 -0.60 8.39 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 1.13 8.04 -2.39 -0.02 1.12 16 50 H 0.06 1.88 8.04 -2.39 -0.02 1.87 16 51 H 0.08 2.31 8.04 -2.39 -0.02 2.29 16 Total: -1.00 -71.22 403.20 0.76 -70.46 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.27 Total: 19.29 kcal Atomic # 6 Polarization: 32.60 SS G_CDS: 8.46 Total: 41.06 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -9.59 Total: -137.76 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.11 Total: -39.08 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.72 Total: 46.01 kcal Total: -71.22 0.76 -70.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713752236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.071 kcal (2) G-P(sol) polarization free energy of solvation -71.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds