Wall clock time and date at job start Tue Mar 31 2020 20:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00232 * 2 1 4 4 H 1.08001 * 120.00583 * 203.22527 * 3 2 1 5 5 C 1.38815 * 119.99544 * 23.22225 * 3 2 1 6 6 N 1.31613 * 120.00628 * 13.89899 * 5 3 2 7 7 Si 1.86801 * 119.99685 * 193.89188 * 5 3 2 8 8 H 1.48505 * 109.47458 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47190 * 120.00361 * 7 5 3 10 10 H 1.48496 * 109.47359 * 240.00245 * 7 5 3 11 11 C 1.46497 * 120.00073 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46974 * 89.99841 * 11 2 1 13 13 H 1.08999 * 110.88356 * 51.12646 * 12 11 2 14 14 C 1.55156 * 111.00906 * 287.19690 * 12 11 2 15 15 C 1.54307 * 102.86653 * 206.22856 * 14 12 11 16 16 N 1.47029 * 107.27562 * 22.52434 * 15 14 12 17 17 C 1.34778 * 125.64870 * 180.96327 * 16 15 14 18 18 O 1.21277 * 119.99927 * 179.69601 * 17 16 15 19 19 C 1.50698 * 119.99933 * 359.69848 * 17 16 15 20 20 N 1.46501 * 109.47037 * 179.97438 * 19 17 16 21 21 C 1.34774 * 119.99852 * 180.02562 * 20 19 17 22 22 O 1.21591 * 120.00513 * 359.97438 * 21 20 19 23 23 N 1.34779 * 120.00155 * 180.02562 * 21 20 19 24 24 C 1.47529 * 125.63280 * 0.03695 * 23 21 20 25 25 C 1.54909 * 104.78215 * 155.84760 * 24 23 21 26 26 C 1.55156 * 101.61620 * 37.00508 * 25 24 23 27 27 C 1.47017 * 125.64993 * 180.02562 * 23 21 20 28 28 C 1.47423 * 108.70198 * 0.70512 * 16 15 14 29 29 H 1.09001 * 109.47549 * 275.16612 * 1 2 3 30 30 H 1.09005 * 109.46842 * 35.16462 * 1 2 3 31 31 H 1.08994 * 109.47511 * 155.16112 * 1 2 3 32 32 H 0.96999 * 120.00771 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.46790 * 330.00611 * 11 2 1 34 34 H 1.09000 * 109.47414 * 210.00339 * 11 2 1 35 35 H 1.09001 * 110.71608 * 324.79107 * 14 12 11 36 36 H 1.09005 * 110.71721 * 87.88413 * 14 12 11 37 37 H 1.08999 * 109.98801 * 263.05261 * 15 14 12 38 38 H 1.08997 * 109.77722 * 141.88764 * 15 14 12 39 39 H 1.09007 * 109.46980 * 60.00016 * 19 17 16 40 40 H 1.08993 * 109.47349 * 299.99851 * 19 17 16 41 41 H 0.96992 * 120.00258 * 0.02562 * 20 19 17 42 42 H 1.09003 * 110.41047 * 37.01423 * 24 23 21 43 43 H 1.09003 * 110.36927 * 274.65932 * 24 23 21 44 44 H 1.08998 * 111.00489 * 278.91425 * 25 24 23 45 45 H 1.08998 * 111.00468 * 155.10012 * 25 24 23 46 46 H 1.09004 * 110.71742 * 82.84285 * 26 25 24 47 47 H 1.09002 * 110.71986 * 205.93831 * 26 25 24 48 48 H 1.08997 * 109.88642 * 61.67291 * 27 23 21 49 49 H 1.08997 * 110.01155 * 300.57897 * 27 23 21 50 50 H 1.08999 * 110.36737 * 94.93215 * 28 16 15 51 51 H 1.08994 * 110.36528 * 217.25926 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1641 1.2238 -0.3688 5 6 1.5399 2.3393 0.4740 6 7 0.4250 2.2566 1.1685 7 14 2.3020 4.0090 0.1264 8 1 3.5436 3.8307 -0.6687 9 1 1.3402 4.8426 -0.6387 10 1 2.6279 4.6813 1.4098 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7110 -1.4417 13 1 2.9025 -0.9051 -2.0215 14 6 1.1450 -2.2141 -2.1087 15 6 1.6622 -3.1921 -3.1843 16 7 3.0032 -3.6288 -2.7688 17 6 3.8009 -4.4737 -3.4516 18 8 4.8950 -4.7612 -3.0146 19 6 3.3332 -5.0612 -4.7582 20 7 4.3733 -5.9400 -5.2986 21 6 4.1747 -6.5789 -6.4686 22 8 3.1322 -6.4263 -7.0754 23 7 5.1313 -7.3879 -6.9655 24 6 6.4365 -7.6636 -6.3354 25 6 6.8677 -9.0382 -6.9046 26 6 6.3569 -8.9450 -8.3667 27 6 5.0469 -8.1417 -8.2249 28 6 3.3333 -2.9846 -1.4845 29 1 -0.3634 0.0925 1.0235 30 1 -0.3633 0.8402 -0.5919 31 1 -0.3634 -0.9325 -0.4317 32 1 -0.0009 3.0626 1.5001 33 1 1.6083 -2.0281 0.5147 34 1 3.1499 -1.1382 0.5144 35 1 0.5160 -2.7302 -1.3833 36 1 0.6031 -1.3869 -2.5675 37 1 1.7189 -2.6886 -4.1494 38 1 0.9963 -4.0524 -3.2513 39 1 3.1328 -4.2575 -5.4669 40 1 2.4217 -5.6354 -4.5929 41 1 5.2048 -6.0622 -4.8144 42 1 6.3315 -7.7177 -5.2518 43 1 7.1599 -6.8956 -6.6094 44 1 6.3783 -9.8530 -6.3711 45 1 7.9515 -9.1505 -6.8758 46 1 7.0717 -8.4094 -8.9915 47 1 6.1618 -9.9383 -8.7711 48 1 4.9417 -7.4528 -9.0630 49 1 4.1961 -8.8224 -8.1959 50 1 3.0854 -3.6453 -0.6538 51 1 4.3894 -2.7165 -1.4550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713752237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:41 Heat of formation + Delta-G solvation = -53.172500 kcal Electronic energy + Delta-G solvation = -29269.169277 eV Core-core repulsion = 25203.505516 eV Total energy + Delta-G solvation = -4065.663762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.63906 -40.93437 -39.10596 -38.44216 -37.10726 -35.61127 -34.01871 -32.71578 -32.13398 -30.47479 -30.04555 -28.92553 -27.88490 -26.74142 -24.66840 -23.94696 -22.92223 -22.04202 -21.22590 -21.17167 -20.54801 -19.37922 -18.58284 -17.91205 -17.80739 -17.37976 -17.14456 -16.81715 -16.51760 -16.10166 -15.65567 -15.44652 -15.05675 -15.00530 -14.61968 -14.52678 -14.33340 -14.19405 -14.09079 -13.92789 -13.66611 -13.56201 -13.39210 -13.16659 -12.91142 -12.80511 -12.58032 -12.51696 -12.21681 -12.17217 -12.15524 -11.95276 -11.74237 -11.60748 -11.59147 -11.48175 -11.35534 -11.16919 -10.61338 -10.44390 -9.75257 -9.59623 -8.72244 -7.80171 -5.28587 1.29737 1.38119 1.45313 1.47773 1.57004 1.96387 1.98652 2.51967 2.91262 3.25524 3.32227 3.60800 3.65597 3.69933 3.72759 3.93312 4.06557 4.12426 4.25296 4.26341 4.29776 4.36247 4.45855 4.48104 4.59631 4.63911 4.64974 4.85209 4.85448 4.86912 4.91351 4.94952 4.99102 5.01748 5.10614 5.12100 5.15303 5.23022 5.26630 5.30551 5.35604 5.38588 5.52752 5.67376 5.77998 5.90931 6.35627 6.38559 6.78956 6.89772 7.19267 7.38114 7.92551 8.34470 9.22051 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026883 B = 0.001776 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.287436 B =15758.172869 C =15947.737671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.614 5.614 3 C -0.256 4.256 4 H 0.067 0.933 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.962 3.038 8 H -0.269 1.269 9 H -0.292 1.292 10 H -0.294 1.294 11 C 0.161 3.839 12 C -0.109 4.109 13 H 0.062 0.938 14 C -0.114 4.114 15 C 0.098 3.902 16 N -0.609 5.609 17 C 0.525 3.475 18 O -0.575 6.575 19 C 0.131 3.869 20 N -0.730 5.730 21 C 0.719 3.281 22 O -0.630 6.630 23 N -0.639 5.639 24 C 0.088 3.912 25 C -0.124 4.124 26 C -0.122 4.122 27 C 0.117 3.883 28 C 0.118 3.882 29 H -0.001 1.001 30 H 0.010 0.990 31 H 0.042 0.958 32 H 0.247 0.753 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.410 0.590 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.079 0.921 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.112 -24.391 -17.107 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.337 5.337 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.791 3.209 8 H -0.193 1.193 9 H -0.219 1.219 10 H -0.221 1.221 11 C 0.035 3.965 12 C -0.130 4.130 13 H 0.080 0.920 14 C -0.152 4.152 15 C -0.024 4.024 16 N -0.342 5.342 17 C 0.314 3.686 18 O -0.456 6.456 19 C 0.003 3.997 20 N -0.389 5.389 21 C 0.420 3.580 22 O -0.511 6.511 23 N -0.376 5.376 24 C -0.034 4.034 25 C -0.162 4.162 26 C -0.160 4.160 27 C -0.006 4.006 28 C -0.005 4.005 29 H 0.017 0.983 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.249 0.751 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.126 0.874 46 H 0.106 0.894 47 H 0.119 0.881 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.097 0.903 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.811 -24.307 -17.251 31.379 hybrid contribution 0.357 1.545 0.476 1.656 sum 10.168 -22.761 -16.774 30.047 Atomic orbital electron populations 1.20562 0.82601 0.96268 0.97361 1.44063 1.02128 1.01406 1.86086 1.19495 0.98427 0.86913 1.33855 0.91501 1.25709 0.98791 1.01605 0.98691 1.70225 1.21602 1.27400 1.39249 0.85284 0.77952 0.80643 0.77049 1.19306 1.21927 1.22122 1.20751 0.95658 0.87109 0.93010 1.22877 0.95736 0.95084 0.99342 0.91988 1.22593 0.96874 0.98207 0.97484 1.22336 0.82080 0.99078 0.98894 1.48501 1.18359 1.44445 1.22861 1.20320 0.83883 0.78473 0.85917 1.90666 1.22325 1.62055 1.70544 1.20850 0.91734 0.95115 0.92006 1.44724 1.21777 1.49520 1.22838 1.15452 0.82838 0.78931 0.80775 1.90902 1.28173 1.69788 1.62252 1.47702 1.17165 1.47613 1.25168 1.22607 0.83580 0.98968 0.98251 1.22772 1.03071 0.95030 0.95359 1.22662 0.94648 1.01158 0.97512 1.21951 0.99924 0.94266 0.84422 1.22214 0.99531 0.93499 0.85240 0.98266 0.97145 0.93925 0.94398 0.92572 0.94081 0.89875 0.90502 0.89945 0.88546 0.87824 0.87273 0.75127 0.90582 0.90438 0.90375 0.87428 0.89390 0.88062 0.92356 0.92257 0.90262 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.23 8.75 127.77 1.12 9.35 16 2 N -0.61 -29.05 2.89 -726.94 -2.10 -31.15 16 3 C -0.26 -13.72 9.65 84.03 0.81 -12.90 16 4 H 0.07 3.52 7.87 -2.91 -0.02 3.49 16 5 C -0.05 -2.94 5.08 84.86 0.43 -2.50 16 6 N -0.94 -55.01 10.77 21.65 0.23 -54.77 16 7 Si 0.96 44.93 29.58 68.60 2.03 46.96 16 8 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 9 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 11 C 0.16 5.94 5.15 86.38 0.44 6.38 16 12 C -0.11 -3.26 3.25 -9.40 -0.03 -3.30 16 13 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.11 -2.78 5.10 31.78 0.16 -2.62 16 15 C 0.10 1.89 6.48 86.72 0.56 2.45 16 16 N -0.61 -14.41 3.33 -811.83 -2.70 -17.12 16 17 C 0.53 12.94 7.92 87.66 0.69 13.64 16 18 O -0.58 -17.51 15.92 -3.02 -0.05 -17.56 16 19 C 0.13 2.71 5.35 85.63 0.46 3.17 16 20 N -0.73 -15.88 5.49 -482.29 -2.65 -18.53 16 21 C 0.72 17.58 8.49 179.05 1.52 19.10 16 22 O -0.63 -19.89 16.67 -4.00 -0.07 -19.96 16 23 N -0.64 -11.53 3.33 -829.48 -2.76 -14.29 16 24 C 0.09 0.98 6.58 86.84 0.57 1.55 16 25 C -0.12 -0.74 7.08 31.99 0.23 -0.51 16 26 C -0.12 -0.76 6.95 31.78 0.22 -0.54 16 27 C 0.12 1.67 6.87 86.73 0.60 2.27 16 28 C 0.12 3.13 6.38 86.86 0.55 3.69 16 29 H 0.00 -0.05 7.33 -2.39 -0.02 -0.07 16 30 H 0.01 0.51 7.38 -2.38 -0.02 0.49 16 31 H 0.04 1.59 6.54 -2.39 -0.02 1.57 16 32 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 33 H 0.06 1.88 7.90 -2.39 -0.02 1.86 16 34 H 0.04 1.57 8.04 -2.39 -0.02 1.55 16 35 H 0.08 1.91 7.54 -2.39 -0.02 1.89 16 36 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.41 8.46 5.92 -92.71 -0.55 7.91 16 42 H 0.08 0.85 7.30 -2.39 -0.02 0.83 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 1.96 8.04 -2.39 -0.02 1.95 16 51 H 0.06 1.88 8.04 -2.39 -0.02 1.86 16 Total: -1.00 -73.50 404.41 0.64 -72.86 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.36 Total: 14.35 kcal Atomic # 6 Polarization: 30.88 SS G_CDS: 8.34 Total: 39.22 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -9.98 Total: -135.86 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.11 Total: -37.52 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -73.50 0.64 -72.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713752237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.684 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds