Wall clock time and date at job start Tue Mar 31 2020 20:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 120.00034 * 2 1 4 4 O 1.21281 * 119.99945 * 4.87424 * 3 2 1 5 5 C 1.50699 * 119.99929 * 184.87108 * 3 2 1 6 6 C 1.50698 * 112.85282 * 304.70270 * 5 3 2 7 7 O 1.21276 * 120.00327 * 103.55835 * 6 5 3 8 8 N 1.34786 * 119.99538 * 283.56631 * 6 5 3 9 9 C 1.46504 * 119.99495 * 184.51112 * 8 6 5 10 10 C 1.52998 * 109.46548 * 179.97438 * 9 8 6 11 11 N 1.46905 * 109.46659 * 179.97438 * 10 9 8 12 12 C 1.46903 * 110.99602 * 169.99912 * 11 10 9 13 13 C 1.53242 * 109.33858 * 187.25187 * 12 11 10 14 14 N 1.47075 * 108.52278 * 306.17512 * 13 12 11 15 15 C 1.36938 * 120.87828 * 231.18266 * 14 13 12 16 16 H 1.07996 * 120.00173 * 31.63716 * 15 14 13 17 17 C 1.38809 * 119.99894 * 211.90741 * 15 14 13 18 18 N 1.31628 * 120.00056 * 11.10296 * 17 15 14 19 19 Si 1.86802 * 120.00260 * 191.10089 * 17 15 14 20 20 H 1.48498 * 109.46829 * 59.99979 * 19 17 15 21 21 H 1.48498 * 109.47261 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46782 * 300.00418 * 19 17 15 23 23 C 1.47081 * 118.23903 * 51.45465 * 14 13 12 24 24 C 1.46894 * 111.00376 * 294.30142 * 11 10 9 25 25 C 1.53785 * 113.68798 * 75.97080 * 5 3 2 26 26 C 1.53775 * 87.08168 * 89.12480 * 25 5 3 27 27 C 1.53783 * 87.08355 * 25.43503 * 26 25 5 28 28 H 1.08994 * 109.47304 * 59.99612 * 1 2 3 29 29 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46920 * 299.99556 * 1 2 3 31 31 H 0.97001 * 119.99786 * 180.02562 * 2 1 3 32 32 H 0.96997 * 120.00215 * 4.50341 * 8 6 5 33 33 H 1.09000 * 109.46812 * 59.99694 * 9 8 6 34 34 H 1.09000 * 109.47007 * 299.99764 * 9 8 6 35 35 H 1.08996 * 109.47584 * 60.00037 * 10 9 8 36 36 H 1.09000 * 109.47626 * 299.99816 * 10 9 8 37 37 H 1.08997 * 109.49218 * 67.29586 * 12 11 10 38 38 H 1.08999 * 109.49465 * 307.21720 * 12 11 10 39 39 H 1.08997 * 109.63138 * 186.46110 * 13 12 11 40 40 H 1.09004 * 109.62338 * 65.87993 * 13 12 11 41 41 H 0.96996 * 119.99825 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.62928 * 68.25315 * 23 14 13 43 43 H 1.09000 * 109.62828 * 188.82846 * 23 14 13 44 44 H 1.09000 * 109.49276 * 292.70780 * 24 11 10 45 45 H 1.09007 * 109.49064 * 52.78414 * 24 11 10 46 46 H 1.08997 * 113.61246 * 203.67599 * 25 5 3 47 47 H 1.08999 * 113.61258 * 334.57367 * 25 5 3 48 48 H 1.08995 * 113.61463 * 270.87961 * 26 25 5 49 49 H 1.09004 * 113.61475 * 139.97931 * 26 25 5 50 50 H 1.08999 * 113.61305 * 220.02212 * 27 26 25 51 51 H 1.08990 * 113.69399 * 89.12293 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5358 2.2156 0.0892 5 6 3.6418 1.1695 -0.1108 6 6 4.3082 0.3320 0.9501 7 8 4.7529 -0.7608 0.6696 8 7 4.4098 0.7976 2.2109 9 6 5.1438 0.0283 3.2188 10 6 5.1082 0.7735 4.5546 11 7 5.8436 0.0018 5.5654 12 6 6.0353 0.7882 6.7913 13 6 6.9565 0.0222 7.7468 14 7 6.4013 -1.3242 7.9520 15 6 6.2124 -1.8216 9.2138 16 1 5.9693 -1.1537 10.0268 17 6 6.3390 -3.1838 9.4489 18 7 6.8496 -3.9670 8.5223 19 14 5.7847 -3.9056 11.0802 20 1 4.3359 -3.6416 11.2715 21 1 6.0256 -5.3709 11.0806 22 1 6.5523 -3.2778 12.1855 23 6 6.0601 -2.1244 6.7661 24 6 5.1687 -1.2717 5.8494 25 6 4.1570 0.8874 -1.5321 26 6 4.0836 2.4040 -1.7750 27 6 4.2467 2.5760 -0.2556 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9500 -0.8401 -0.0004 32 1 3.9972 1.6420 2.4509 33 1 6.1786 -0.0950 2.8993 34 1 4.6806 -0.9514 3.3364 35 1 4.0735 0.8971 4.8743 36 1 5.5716 1.7530 4.4368 37 1 5.0709 0.9546 7.2712 38 1 6.4877 1.7478 6.5409 39 1 7.0106 0.5454 8.7014 40 1 7.9528 -0.0550 7.3114 41 1 6.9377 -4.9189 8.6865 42 1 6.9719 -2.4040 6.2383 43 1 5.5213 -3.0212 7.0721 44 1 4.2164 -1.0766 6.3425 45 1 4.9926 -1.8061 4.9158 46 1 5.1714 0.4896 -1.5578 47 1 3.4605 0.3131 -2.1430 48 1 3.1173 2.7397 -2.1513 49 1 4.9223 2.7950 -2.3511 50 1 3.6226 3.3649 0.1640 51 1 5.2852 2.6401 0.0690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713812776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:06 Heat of formation + Delta-G solvation = -16.772874 kcal Electronic energy + Delta-G solvation = -30055.156520 eV Core-core repulsion = 25991.071165 eV Total energy + Delta-G solvation = -4064.085355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.55918 -39.31827 -38.25480 -37.45933 -35.50685 -34.98217 -33.99748 -31.49794 -29.94004 -29.55548 -28.39872 -26.61946 -25.92095 -25.50748 -23.33253 -22.61327 -22.02056 -21.46345 -21.22859 -19.76424 -19.13933 -18.28943 -16.85675 -16.79210 -16.41167 -16.21002 -15.65700 -15.49843 -15.18484 -14.93998 -14.61116 -14.49499 -14.23076 -13.88521 -13.57111 -13.47370 -13.40046 -13.30361 -12.96295 -12.88623 -12.70079 -12.56972 -12.39978 -11.81549 -11.66576 -11.44948 -11.41243 -11.32941 -11.02176 -10.87276 -10.76508 -10.50298 -10.37542 -10.31719 -10.07318 -9.91337 -9.79659 -9.63369 -9.56897 -9.20273 -8.51764 -7.91535 -6.59973 -5.78410 -3.26170 2.01042 2.25811 2.76277 2.83720 3.37416 3.42861 3.43684 3.95552 4.04334 4.22464 4.30233 4.34756 4.47648 4.51429 4.81939 4.92016 4.99643 5.09894 5.13162 5.23347 5.35069 5.38795 5.40106 5.42178 5.48703 5.49907 5.56876 5.57825 5.79387 5.89214 5.90512 5.91569 5.92506 6.00506 6.09418 6.17973 6.24466 6.31499 6.53346 6.67291 6.92644 6.97193 7.19615 7.22944 7.51863 7.62712 7.68964 7.70284 7.80002 7.91058 8.46572 9.21947 9.83014 10.44253 11.30194 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.002159 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.794277 B =12965.506906 C =13452.415695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.729 5.729 3 C 0.546 3.454 4 O -0.526 6.526 5 C -0.139 4.139 6 C 0.531 3.469 7 O -0.527 6.527 8 N -0.721 5.721 9 C 0.120 3.880 10 C 0.044 3.956 11 N -0.528 5.528 12 C 0.046 3.954 13 C 0.148 3.852 14 N -0.595 5.595 15 C -0.256 4.256 16 H 0.063 0.937 17 C 0.005 3.995 18 N -0.904 5.904 19 Si 0.905 3.095 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.181 3.819 24 C 0.030 3.970 25 C -0.100 4.100 26 C -0.140 4.140 27 C -0.112 4.112 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.408 0.592 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.026 0.974 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.085 0.915 44 H 0.025 0.975 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.091 0.909 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 11.934 -20.815 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.380 5.380 3 C 0.330 3.670 4 O -0.402 6.402 5 C -0.145 4.145 6 C 0.315 3.685 7 O -0.403 6.403 8 N -0.372 5.372 9 C -0.003 4.003 10 C -0.085 4.085 11 N -0.254 5.254 12 C -0.083 4.083 13 C 0.022 3.978 14 N -0.319 5.319 15 C -0.386 4.386 16 H 0.081 0.919 17 C -0.194 4.194 18 N -0.548 5.548 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.055 3.945 24 C -0.099 4.099 25 C -0.138 4.138 26 C -0.178 4.178 27 C -0.150 4.150 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.242 0.758 32 H 0.235 0.765 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.103 0.897 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.097 0.903 50 H 0.110 0.890 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.675 11.578 -21.093 25.578 hybrid contribution -1.111 -0.342 1.360 1.790 sum -9.787 11.236 -19.733 24.727 Atomic orbital electron populations 1.21605 0.78903 1.02716 1.02492 1.45783 1.08137 1.08869 1.75220 1.19457 0.87653 0.83918 0.75944 1.90717 1.69401 1.31324 1.48776 1.22387 0.93420 1.00608 0.98124 1.19868 0.79818 0.86234 0.82606 1.90752 1.48311 1.20279 1.80960 1.45985 1.55727 1.25756 1.09742 1.21447 0.97302 0.95039 0.86531 1.22200 0.96980 0.97333 0.91973 1.61877 1.48565 1.04856 1.10056 1.22635 0.99453 0.95923 0.90311 1.20993 0.94061 0.87342 0.95448 1.44074 1.72401 1.12838 1.02541 1.19112 1.41725 0.91398 0.86316 0.91930 1.25195 0.99035 0.97595 0.97564 1.69971 1.46551 1.04437 1.33801 0.86345 0.78584 0.77999 0.83631 1.21048 1.21564 1.20833 1.20916 0.95546 0.92771 0.85247 1.23103 0.96762 0.90527 0.99512 1.22810 1.02848 0.97424 0.90691 1.22871 1.03046 0.95637 0.96224 1.22872 1.01440 0.93280 0.97417 0.92008 0.90278 0.91875 0.75773 0.76530 0.90202 0.90872 0.95011 0.90780 0.95379 0.91970 0.92545 0.95594 0.93486 0.95334 0.89653 0.95624 0.91902 0.87956 0.90485 0.89546 0.90278 0.89024 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.71 59.85 0.64 1.22 16 2 N -0.73 -6.13 5.65 -67.08 -0.38 -6.51 16 3 C 0.55 5.53 6.55 -10.99 -0.07 5.45 16 4 O -0.53 -6.65 15.88 5.56 0.09 -6.56 16 5 C -0.14 -1.26 1.06 -156.00 -0.17 -1.43 16 6 C 0.53 5.99 6.40 -10.98 -0.07 5.92 16 7 O -0.53 -7.63 16.45 5.56 0.09 -7.54 16 8 N -0.72 -7.62 5.48 -60.29 -0.33 -7.95 16 9 C 0.12 1.53 5.61 -4.04 -0.02 1.51 16 10 C 0.04 0.58 5.08 -3.82 -0.02 0.56 16 11 N -0.53 -9.08 4.63 -234.02 -1.08 -10.16 16 12 C 0.05 0.81 5.62 -3.70 -0.02 0.79 16 13 C 0.15 3.14 6.69 -3.60 -0.02 3.12 16 14 N -0.60 -15.10 3.01 -171.74 -0.52 -15.62 16 15 C -0.26 -7.05 9.61 -15.06 -0.14 -7.19 16 16 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 17 C 0.01 0.14 5.04 -17.43 -0.09 0.05 16 18 N -0.90 -26.32 11.17 55.49 0.62 -25.70 16 19 Si 0.90 21.69 29.57 -169.99 -5.03 16.66 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.18 4.38 5.38 -3.37 -0.02 4.36 16 24 C 0.03 0.58 5.48 -3.47 -0.02 0.56 16 25 C -0.10 -0.78 6.88 -25.92 -0.18 -0.95 16 26 C -0.14 -0.96 7.80 -25.92 -0.20 -1.17 16 27 C -0.11 -0.86 6.91 -25.91 -0.18 -1.04 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.41 3.16 8.61 -40.82 -0.35 2.81 16 32 H 0.40 3.53 8.42 -40.82 -0.34 3.18 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.06 6.40 -51.93 -0.33 0.72 16 35 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 36 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 39 H 0.06 1.15 7.95 -51.93 -0.41 0.73 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 2.28 6.32 -51.93 -0.33 1.95 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 1.12 6.16 -51.93 -0.32 0.80 16 46 H 0.10 0.83 7.93 -51.93 -0.41 0.42 16 47 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.09 0.75 7.37 -51.93 -0.38 0.37 16 51 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -32.99 405.00 -9.77 -42.76 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.75 Total: 2.75 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -0.58 Total: 11.76 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -1.69 Total: -65.94 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.18 Total: -14.10 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.99 -9.77 -42.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713812776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.985 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds