Wall clock time and date at job start Tue Mar 31 2020 20:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 120.00034 * 2 1 4 4 O 1.21281 * 119.99945 * 4.87424 * 3 2 1 5 5 C 1.50699 * 119.99929 * 184.87108 * 3 2 1 6 6 C 1.50698 * 112.85282 * 304.70270 * 5 3 2 7 7 O 1.21276 * 120.00327 * 103.55835 * 6 5 3 8 8 N 1.34786 * 119.99538 * 283.56631 * 6 5 3 9 9 C 1.46504 * 119.99495 * 184.51112 * 8 6 5 10 10 C 1.52998 * 109.46548 * 179.97438 * 9 8 6 11 11 N 1.46905 * 109.46659 * 179.97438 * 10 9 8 12 12 C 1.46903 * 110.99602 * 169.99912 * 11 10 9 13 13 C 1.53242 * 109.33858 * 187.25187 * 12 11 10 14 14 N 1.47075 * 108.52278 * 306.17512 * 13 12 11 15 15 C 1.36938 * 120.87828 * 231.18266 * 14 13 12 16 16 H 1.07996 * 120.00173 * 31.63716 * 15 14 13 17 17 C 1.38809 * 119.99894 * 211.90741 * 15 14 13 18 18 N 1.31628 * 120.00056 * 11.10296 * 17 15 14 19 19 Si 1.86802 * 120.00260 * 191.10089 * 17 15 14 20 20 H 1.48498 * 109.46829 * 59.99979 * 19 17 15 21 21 H 1.48498 * 109.47261 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46782 * 300.00418 * 19 17 15 23 23 C 1.47081 * 118.23903 * 51.45465 * 14 13 12 24 24 C 1.46894 * 111.00376 * 294.30142 * 11 10 9 25 25 C 1.53785 * 113.68798 * 75.97080 * 5 3 2 26 26 C 1.53775 * 87.08168 * 89.12480 * 25 5 3 27 27 C 1.53783 * 87.08355 * 25.43503 * 26 25 5 28 28 H 1.08994 * 109.47304 * 59.99612 * 1 2 3 29 29 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46920 * 299.99556 * 1 2 3 31 31 H 0.97001 * 119.99786 * 180.02562 * 2 1 3 32 32 H 0.96997 * 120.00215 * 4.50341 * 8 6 5 33 33 H 1.09000 * 109.46812 * 59.99694 * 9 8 6 34 34 H 1.09000 * 109.47007 * 299.99764 * 9 8 6 35 35 H 1.08996 * 109.47584 * 60.00037 * 10 9 8 36 36 H 1.09000 * 109.47626 * 299.99816 * 10 9 8 37 37 H 1.08997 * 109.49218 * 67.29586 * 12 11 10 38 38 H 1.08999 * 109.49465 * 307.21720 * 12 11 10 39 39 H 1.08997 * 109.63138 * 186.46110 * 13 12 11 40 40 H 1.09004 * 109.62338 * 65.87993 * 13 12 11 41 41 H 0.96996 * 119.99825 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.62928 * 68.25315 * 23 14 13 43 43 H 1.09000 * 109.62828 * 188.82846 * 23 14 13 44 44 H 1.09000 * 109.49276 * 292.70780 * 24 11 10 45 45 H 1.09007 * 109.49064 * 52.78414 * 24 11 10 46 46 H 1.08997 * 113.61246 * 203.67599 * 25 5 3 47 47 H 1.08999 * 113.61258 * 334.57367 * 25 5 3 48 48 H 1.08995 * 113.61463 * 270.87961 * 26 25 5 49 49 H 1.09004 * 113.61475 * 139.97931 * 26 25 5 50 50 H 1.08999 * 113.61305 * 220.02212 * 27 26 25 51 51 H 1.08990 * 113.69399 * 89.12293 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5358 2.2156 0.0892 5 6 3.6418 1.1695 -0.1108 6 6 4.3082 0.3320 0.9501 7 8 4.7529 -0.7608 0.6696 8 7 4.4098 0.7976 2.2109 9 6 5.1438 0.0283 3.2188 10 6 5.1082 0.7735 4.5546 11 7 5.8436 0.0018 5.5654 12 6 6.0353 0.7882 6.7913 13 6 6.9565 0.0222 7.7468 14 7 6.4013 -1.3242 7.9520 15 6 6.2124 -1.8216 9.2138 16 1 5.9693 -1.1537 10.0268 17 6 6.3390 -3.1838 9.4489 18 7 6.8496 -3.9670 8.5223 19 14 5.7847 -3.9056 11.0802 20 1 4.3359 -3.6416 11.2715 21 1 6.0256 -5.3709 11.0806 22 1 6.5523 -3.2778 12.1855 23 6 6.0601 -2.1244 6.7661 24 6 5.1687 -1.2717 5.8494 25 6 4.1570 0.8874 -1.5321 26 6 4.0836 2.4040 -1.7750 27 6 4.2467 2.5760 -0.2556 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9500 -0.8401 -0.0004 32 1 3.9972 1.6420 2.4509 33 1 6.1786 -0.0950 2.8993 34 1 4.6806 -0.9514 3.3364 35 1 4.0735 0.8971 4.8743 36 1 5.5716 1.7530 4.4368 37 1 5.0709 0.9546 7.2712 38 1 6.4877 1.7478 6.5409 39 1 7.0106 0.5454 8.7014 40 1 7.9528 -0.0550 7.3114 41 1 6.9377 -4.9189 8.6865 42 1 6.9719 -2.4040 6.2383 43 1 5.5213 -3.0212 7.0721 44 1 4.2164 -1.0766 6.3425 45 1 4.9926 -1.8061 4.9158 46 1 5.1714 0.4896 -1.5578 47 1 3.4605 0.3131 -2.1430 48 1 3.1173 2.7397 -2.1513 49 1 4.9223 2.7950 -2.3511 50 1 3.6226 3.3649 0.1640 51 1 5.2852 2.6401 0.0690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713812776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:04 Heat of formation + Delta-G solvation = -42.064793 kcal Electronic energy + Delta-G solvation = -30056.253260 eV Core-core repulsion = 25991.071165 eV Total energy + Delta-G solvation = -4065.182095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.33020 -40.27812 -39.66540 -38.21590 -36.86019 -35.74153 -35.45717 -33.31290 -31.64468 -30.72385 -29.32115 -27.82990 -26.71205 -26.50373 -24.95895 -24.27246 -22.90179 -22.58921 -22.09927 -20.86718 -20.46683 -19.16021 -18.69908 -17.51403 -17.43799 -17.08432 -16.87363 -16.53805 -16.36324 -16.02165 -15.87898 -15.62036 -15.48121 -15.29011 -15.04008 -14.94642 -14.71731 -14.34774 -14.11313 -13.94703 -13.48816 -13.26418 -13.21349 -13.05377 -12.94548 -12.84287 -12.65864 -12.59271 -12.52386 -12.29252 -12.04175 -12.00915 -11.88976 -11.57965 -11.49526 -11.42927 -11.12614 -10.78483 -10.60355 -10.27787 -10.19803 -9.32394 -8.62430 -7.88145 -5.39738 1.19538 1.40445 1.45900 1.47857 1.54936 1.92818 2.08749 2.49472 3.03657 3.28128 3.28774 3.38689 3.56459 3.64861 3.68941 3.76742 3.84347 4.04893 4.28079 4.31182 4.33925 4.42548 4.43807 4.53899 4.55657 4.63312 4.66131 4.70531 4.75792 4.80242 4.86849 4.89878 4.94064 4.96745 4.98584 5.02837 5.03480 5.19680 5.25840 5.27263 5.35243 5.36072 5.60717 5.67332 6.12248 6.19535 6.26275 6.36659 6.39211 6.95706 7.04362 7.13603 7.82330 8.38821 9.18159 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.002159 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.794277 B =12965.506906 C =13452.415695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.725 5.725 3 C 0.544 3.456 4 O -0.554 6.554 5 C -0.137 4.137 6 C 0.533 3.467 7 O -0.561 6.561 8 N -0.710 5.710 9 C 0.130 3.870 10 C 0.053 3.947 11 N -0.539 5.539 12 C 0.057 3.943 13 C 0.142 3.858 14 N -0.615 5.615 15 C -0.267 4.267 16 H 0.066 0.934 17 C -0.050 4.050 18 N -0.937 5.937 19 Si 0.971 3.029 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.274 1.274 23 C 0.189 3.811 24 C 0.049 3.951 25 C -0.099 4.099 26 C -0.132 4.132 27 C -0.109 4.109 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.411 0.589 32 H 0.412 0.588 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.102 0.898 37 H 0.026 0.974 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.016 0.984 41 H 0.251 0.749 42 H -0.002 1.002 43 H 0.052 0.948 44 H 0.021 0.979 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.894 13.834 -21.455 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.376 5.376 3 C 0.329 3.671 4 O -0.432 6.432 5 C -0.144 4.144 6 C 0.319 3.681 7 O -0.439 6.439 8 N -0.362 5.362 9 C 0.006 3.994 10 C -0.076 4.076 11 N -0.265 5.265 12 C -0.071 4.071 13 C 0.017 3.983 14 N -0.339 5.339 15 C -0.397 4.397 16 H 0.084 0.916 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.799 3.201 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.200 1.200 23 C 0.063 3.937 24 C -0.080 4.080 25 C -0.137 4.137 26 C -0.169 4.169 27 C -0.147 4.147 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.248 0.752 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.120 0.880 37 H 0.044 0.956 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.070 0.930 44 H 0.039 0.961 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.115 0.885 50 H 0.106 0.894 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.534 13.523 -21.738 27.319 hybrid contribution -0.827 -0.910 1.525 1.959 sum -10.361 12.613 -20.213 25.981 Atomic orbital electron populations 1.21752 0.77854 1.04352 1.02103 1.45871 1.08962 1.08595 1.74133 1.19601 0.87976 0.83903 0.75605 1.90704 1.69955 1.32238 1.50310 1.22417 0.92756 1.01271 0.97948 1.20214 0.79190 0.85840 0.82902 1.90741 1.49834 1.21829 1.81501 1.45844 1.55242 1.25921 1.09184 1.21186 0.96682 0.94540 0.87008 1.22199 0.97262 0.97721 0.90380 1.61765 1.49373 1.04585 1.10743 1.22481 0.98589 0.96564 0.89513 1.21165 0.94404 0.85838 0.96940 1.44363 1.73108 1.14313 1.02140 1.19471 1.41060 0.91812 0.87396 0.91593 1.25984 0.99563 0.98044 1.00938 1.70150 1.48083 1.04272 1.35719 0.85296 0.78340 0.76742 0.79757 1.20304 1.21978 1.19958 1.20642 0.94614 0.92789 0.85683 1.22712 0.95142 0.91384 0.98787 1.22838 1.02727 0.98317 0.89805 1.22825 1.03512 0.94726 0.95875 1.22919 1.01746 0.91989 0.98022 0.91853 0.87713 0.92769 0.75377 0.75154 0.91354 0.92732 0.94088 0.87960 0.95555 0.88147 0.91973 0.96632 0.94028 0.98368 0.92998 0.96101 0.90516 0.88200 0.89990 0.90043 0.88506 0.89397 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.71 127.77 1.37 2.36 16 2 N -0.73 -11.36 5.65 -484.52 -2.74 -14.10 16 3 C 0.54 10.38 6.55 87.66 0.57 10.95 16 4 O -0.55 -13.42 15.88 -3.03 -0.05 -13.47 16 5 C -0.14 -2.30 1.06 -53.15 -0.06 -2.36 16 6 C 0.53 11.36 6.40 87.65 0.56 11.93 16 7 O -0.56 -15.89 16.45 -3.02 -0.05 -15.94 16 8 N -0.71 -13.67 5.48 -463.05 -2.54 -16.20 16 9 C 0.13 3.11 5.61 86.38 0.48 3.59 16 10 C 0.05 1.22 5.08 86.30 0.44 1.66 16 11 N -0.54 -17.56 4.63 -894.32 -4.14 -21.70 16 12 C 0.06 1.87 5.62 86.38 0.49 2.35 16 13 C 0.14 5.93 6.69 86.35 0.58 6.50 16 14 N -0.61 -31.64 3.01 -697.26 -2.10 -33.74 16 15 C -0.27 -14.89 9.61 84.03 0.81 -14.08 16 16 H 0.07 3.55 7.85 -2.91 -0.02 3.53 16 17 C -0.05 -2.81 5.04 84.86 0.43 -2.38 16 18 N -0.94 -56.35 11.17 21.65 0.24 -56.11 16 19 Si 0.97 45.13 29.57 68.60 2.03 47.16 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 C 0.19 9.42 5.38 86.50 0.47 9.89 16 24 C 0.05 1.89 5.48 86.54 0.47 2.36 16 25 C -0.10 -1.39 6.88 31.12 0.21 -1.18 16 26 C -0.13 -1.55 7.80 31.12 0.24 -1.31 16 27 C -0.11 -1.46 6.91 31.12 0.22 -1.24 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.41 5.93 8.61 -92.71 -0.80 5.13 16 32 H 0.41 6.19 8.42 -92.71 -0.78 5.41 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.53 6.40 -2.39 -0.02 1.51 16 35 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 36 H 0.10 1.89 7.97 -2.39 -0.02 1.87 16 37 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 2.54 7.99 -2.39 -0.02 2.52 16 39 H 0.06 2.47 7.95 -2.39 -0.02 2.45 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.05 2.90 6.32 -2.39 -0.02 2.89 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 2.72 6.16 -2.38 -0.01 2.70 16 46 H 0.10 1.49 7.93 -2.39 -0.02 1.47 16 47 H 0.08 1.06 8.10 -2.39 -0.02 1.04 16 48 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.09 1.28 7.37 -2.39 -0.02 1.26 16 51 H 0.11 1.20 8.09 -2.39 -0.02 1.18 16 Total: -1.00 -72.93 405.00 -2.71 -75.63 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -0.64 Total: 19.43 kcal Atomic # 6 Polarization: 21.76 SS G_CDS: 7.28 Total: 29.04 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -11.27 Total: -141.86 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.10 Total: -29.40 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.93 -2.71 -75.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713812776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.569 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds