Wall clock time and date at job start Tue Mar 31 2020 21:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99888 * 2 1 4 4 H 1.48498 * 109.47217 * 269.99824 * 3 2 1 5 5 H 1.48505 * 109.47010 * 30.00062 * 3 2 1 6 6 H 1.48508 * 109.46745 * 149.99745 * 3 2 1 7 7 C 1.38805 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99829 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00620 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00491 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47134 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.47681 * 64.99753 * 11 10 9 13 13 N 1.46505 * 109.47020 * 304.99621 * 11 10 9 14 14 C 1.34783 * 119.99860 * 155.00244 * 13 11 10 15 15 O 1.21276 * 119.99934 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99994 * 180.02562 * 14 13 11 17 17 C 1.52998 * 109.47408 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47201 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.46862 * 60.00295 * 18 17 16 20 20 O 1.42903 * 109.47256 * 60.00148 * 19 18 17 21 21 C 1.53001 * 109.47329 * 299.99879 * 19 18 17 22 22 C 1.52997 * 109.47050 * 60.00237 * 21 19 18 23 23 C 1.53001 * 109.47396 * 184.99939 * 11 10 9 24 24 C 1.53003 * 109.47107 * 300.00132 * 23 11 10 25 25 C 1.52994 * 109.47415 * 179.97438 * 24 23 11 26 26 C 1.53007 * 109.47184 * 59.99488 * 25 24 23 27 27 C 1.52995 * 109.47169 * 300.00449 * 26 25 24 28 28 C 1.52993 * 109.47527 * 179.97438 * 23 11 10 29 29 H 0.97008 * 119.99963 * 359.97438 * 1 2 3 30 30 H 0.97007 * 119.99435 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47071 * 60.00263 * 10 9 7 32 32 H 1.09008 * 109.47079 * 300.00068 * 10 9 7 33 33 H 0.96991 * 120.00064 * 335.00100 * 13 11 10 34 34 H 1.09006 * 109.47347 * 300.00403 * 16 14 13 35 35 H 1.09009 * 109.46785 * 60.00103 * 17 16 14 36 36 H 1.08997 * 109.47329 * 300.00448 * 17 16 14 37 37 H 1.08997 * 109.47549 * 300.00564 * 18 17 16 38 38 H 1.08997 * 109.46932 * 180.02562 * 18 17 16 39 39 H 1.09008 * 109.47201 * 179.97438 * 19 18 17 40 40 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47164 * 180.02562 * 21 19 18 42 42 H 1.08997 * 109.47124 * 299.99757 * 21 19 18 43 43 H 1.08997 * 109.46932 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.47549 * 59.99780 * 22 21 19 45 45 H 1.09005 * 109.46811 * 59.99393 * 23 11 10 46 46 H 1.09006 * 109.46513 * 299.99868 * 24 23 11 47 47 H 1.08999 * 109.46847 * 59.99234 * 24 23 11 48 48 H 1.09004 * 109.47367 * 300.00184 * 25 24 23 49 49 H 1.08999 * 109.47472 * 179.97438 * 25 24 23 50 50 H 1.08998 * 109.46923 * 179.97438 * 26 25 24 51 51 H 1.09004 * 109.46401 * 60.00103 * 26 25 24 52 52 H 1.09004 * 109.47346 * 299.99706 * 27 26 25 53 53 H 1.09001 * 109.47242 * 179.97438 * 27 26 25 54 54 H 1.08997 * 109.47365 * 299.99868 * 28 23 11 55 55 H 1.09004 * 109.46884 * 60.00396 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8196 -0.0012 12 1 0.4979 -4.8134 -0.9327 13 7 0.1439 -4.6762 1.1300 14 6 -1.0806 -5.2371 1.0781 15 8 -1.4207 -5.8608 0.0952 16 6 -2.0270 -5.0891 2.2414 17 6 -3.3378 -5.8134 1.9279 18 6 -4.2984 -5.6636 3.1093 19 6 -4.5811 -4.1797 3.3517 20 8 -5.1722 -3.6100 2.1820 21 6 -3.2704 -3.4554 3.6653 22 6 -2.3098 -3.6051 2.4839 23 6 1.8245 -6.1412 0.1245 24 6 2.7853 -6.2910 -1.0568 25 6 3.5464 -7.6121 -0.9308 26 6 2.5525 -8.7754 -0.9310 27 6 1.5918 -8.6256 0.2502 28 6 0.8302 -7.3040 0.1245 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6846 -3.7145 0.8895 32 1 2.6847 -3.7145 -0.8906 33 1 0.4161 -4.1777 1.9162 34 1 -1.5763 -5.5229 3.1341 35 1 -3.1364 -6.8707 1.7556 36 1 -3.7883 -5.3792 1.0354 37 1 -3.8476 -6.0981 4.0015 38 1 -5.2320 -6.1800 2.8860 39 1 -5.2659 -4.0730 4.1931 40 1 -5.3784 -2.6688 2.2641 41 1 -3.4719 -2.3982 3.8384 42 1 -2.8196 -3.8898 4.5575 43 1 -1.3758 -3.0894 2.7075 44 1 -2.7605 -3.1706 1.5917 45 1 2.3904 -6.1474 1.0561 46 1 2.2193 -6.2847 -1.9884 47 1 3.4935 -5.4625 -1.0563 48 1 4.1123 -7.6181 0.0008 49 1 4.2305 -7.7191 -1.7726 50 1 3.0948 -9.7167 -0.8417 51 1 1.9866 -8.7695 -1.8626 52 1 2.1577 -8.6315 1.1819 53 1 0.8834 -9.4541 0.2498 54 1 0.1461 -7.1972 0.9663 55 1 0.2641 -7.2979 -0.8069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714959712.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:43 Heat of formation + Delta-G solvation = -141.900320 kcal Electronic energy + Delta-G solvation = -31864.333200 eV Core-core repulsion = 27898.362255 eV Total energy + Delta-G solvation = -3965.970945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.56125 -40.00974 -38.87088 -37.18856 -35.86337 -35.30704 -33.19164 -32.22096 -31.66549 -31.52146 -30.75033 -28.52656 -25.74493 -24.55038 -23.74179 -23.52898 -22.97012 -21.76814 -21.27021 -20.69129 -20.46409 -19.21950 -18.06187 -17.64667 -17.26535 -16.95590 -16.68062 -16.27216 -15.70391 -15.47086 -15.28344 -15.19016 -15.00416 -14.85968 -14.79453 -14.52322 -14.27982 -14.06743 -13.70356 -13.32785 -13.22978 -13.16737 -13.08420 -12.95746 -12.86041 -12.81090 -12.63012 -12.42821 -12.25709 -12.07457 -11.98578 -11.92898 -11.81600 -11.76773 -11.51771 -11.38501 -11.13238 -11.06825 -10.97067 -10.81195 -10.70707 -10.42209 -9.80985 -8.99325 -7.92646 -5.22316 1.47796 1.49371 1.57378 1.76199 2.33073 2.56392 3.40871 3.44514 3.59755 3.66469 3.77935 3.84142 3.86964 3.93459 4.09266 4.16615 4.17965 4.27326 4.29478 4.30713 4.44930 4.47801 4.50213 4.51504 4.59523 4.61082 4.66025 4.68573 4.73510 4.78925 4.84168 4.92247 4.96280 5.02762 5.08654 5.12985 5.16176 5.20768 5.26469 5.28688 5.31062 5.32300 5.34390 5.35671 5.42648 5.47716 5.52309 5.52765 5.62456 5.71845 6.27240 6.68148 6.95032 7.34755 7.38743 8.08038 8.32692 9.29922 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.005872 B = 0.005452 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4766.980584 B = 5134.471185 C = 9505.363003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.148 3.852 11 C 0.153 3.847 12 H 0.049 0.951 13 N -0.707 5.707 14 C 0.514 3.486 15 O -0.576 6.576 16 C -0.095 4.095 17 C -0.087 4.087 18 C -0.108 4.108 19 C 0.100 3.900 20 O -0.587 6.587 21 C -0.142 4.142 22 C -0.100 4.100 23 C -0.080 4.080 24 C -0.115 4.115 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.094 4.094 29 H 0.249 0.751 30 H 0.374 0.626 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.406 0.594 34 H 0.120 0.880 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.387 0.613 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.039 0.961 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.050 0.950 52 H 0.068 0.932 53 H 0.060 0.940 54 H 0.047 0.953 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.658 -16.158 10.096 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.220 1.220 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.384 5.384 10 C 0.021 3.979 11 C 0.048 3.952 12 H 0.067 0.933 13 N -0.357 5.357 14 C 0.301 3.699 15 O -0.456 6.456 16 C -0.116 4.116 17 C -0.125 4.125 18 C -0.146 4.146 19 C 0.042 3.958 20 O -0.395 6.395 21 C -0.180 4.180 22 C -0.138 4.138 23 C -0.100 4.100 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.152 4.152 28 C -0.132 4.132 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.241 0.759 34 H 0.138 0.862 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.236 0.764 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.069 0.931 52 H 0.087 0.913 53 H 0.078 0.922 54 H 0.066 0.934 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.651 -17.103 9.183 19.483 hybrid contribution -0.111 2.259 -0.115 2.265 sum -1.762 -14.844 9.068 17.483 Atomic orbital electron populations 1.69840 1.06531 1.25843 1.59308 1.25502 0.96272 1.00843 1.03653 0.85192 0.77860 0.79788 0.77187 1.21973 1.22276 1.19220 1.19599 0.91481 0.85136 1.41329 0.90509 1.42516 1.05596 1.00879 1.89428 1.21117 0.93494 0.84181 0.99118 1.21068 0.90077 0.94867 0.89225 0.93281 1.45941 1.14818 1.54666 1.20284 1.21078 0.82106 0.77518 0.89151 1.90650 1.76692 1.43025 1.35222 1.21341 0.95266 0.98231 0.96729 1.21131 0.93366 0.99411 0.98635 1.21614 0.99483 0.94604 0.98859 1.21958 0.92892 0.93460 0.87508 1.86520 1.83242 1.29661 1.40100 1.22219 0.96120 1.01596 0.98054 1.21301 0.99864 0.93408 0.99217 1.21423 0.96132 0.92607 0.99840 1.21605 0.97857 0.98743 0.97107 1.21489 0.97498 0.93332 1.02549 1.21534 0.97243 0.98697 0.98010 1.21549 0.98190 0.96428 0.99066 1.21468 0.96607 0.94297 1.00845 0.94188 0.79435 0.94515 0.94624 0.75878 0.86212 0.91963 0.94132 0.87957 0.91045 0.90440 0.76408 0.91068 0.88585 0.92209 0.94231 0.90079 0.93337 0.91483 0.91121 0.91106 0.90593 0.93084 0.91311 0.92157 0.93418 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.36 13.06 21.65 0.28 -58.08 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.90 5.43 -343.47 -1.87 -38.76 16 10 C 0.15 5.72 5.31 86.38 0.46 6.18 16 11 C 0.15 5.29 2.00 44.99 0.09 5.38 16 12 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 13 N -0.71 -23.05 4.30 -442.53 -1.90 -24.95 16 14 C 0.51 17.24 5.51 87.65 0.48 17.72 16 15 O -0.58 -23.17 13.10 -3.02 -0.04 -23.21 16 16 C -0.09 -2.48 2.52 -11.54 -0.03 -2.51 16 17 C -0.09 -2.31 4.35 30.59 0.13 -2.18 16 18 C -0.11 -2.07 5.66 30.59 0.17 -1.90 16 19 C 0.10 1.92 3.77 30.59 0.12 2.04 16 20 O -0.59 -14.46 11.97 -148.98 -1.78 -16.24 16 21 C -0.14 -2.82 5.64 30.59 0.17 -2.65 16 22 C -0.10 -2.78 4.96 30.60 0.15 -2.63 16 23 C -0.08 -2.21 1.96 -10.79 -0.02 -2.23 16 24 C -0.12 -2.92 4.85 30.59 0.15 -2.77 16 25 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 26 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 27 C -0.11 -2.48 5.92 30.61 0.18 -2.30 16 28 C -0.09 -2.64 3.73 30.61 0.11 -2.53 16 29 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 30 H 0.37 20.34 7.33 -92.70 -0.68 19.66 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.40 6.71 -2.38 -0.02 1.38 16 33 H 0.41 12.49 8.02 -92.72 -0.74 11.75 16 34 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.06 1.64 8.10 -2.38 -0.02 1.62 16 36 H 0.04 1.38 7.64 -2.39 -0.02 1.36 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.11 8.14 -2.38 -0.02 1.10 16 40 H 0.39 7.05 9.08 -74.06 -0.67 6.37 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 1.79 7.56 -2.39 -0.02 1.78 16 44 H 0.04 1.40 7.68 -2.39 -0.02 1.38 16 45 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.07 1.72 6.54 -2.39 -0.02 1.71 16 48 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 52 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 54 H 0.05 1.43 5.78 -2.39 -0.01 1.41 16 55 H 0.04 1.35 7.53 -2.39 -0.02 1.33 16 Total: -1.00 -70.20 410.09 -0.66 -70.86 By element: Atomic # 1 Polarization: 54.54 SS G_CDS: -1.22 Total: 53.32 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 3.84 Total: -10.45 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -3.49 Total: -121.80 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.82 Total: -39.46 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.20 -0.66 -70.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714959712.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.043 kcal (2) G-P(sol) polarization free energy of solvation -70.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds