Wall clock time and date at job start Tue Mar 31 2020 21:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00253 * 2 1 4 4 H 1.48500 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47038 * 300.00205 * 3 2 1 6 6 H 1.48507 * 109.47115 * 59.99634 * 3 2 1 7 7 C 1.38818 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99963 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00038 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47311 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47387 * 295.00620 * 11 10 9 13 13 N 1.46505 * 109.46845 * 55.00170 * 11 10 9 14 14 C 1.34777 * 120.00115 * 204.99901 * 13 11 10 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 13 11 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 11 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 20 20 O 1.42903 * 109.47126 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46891 * 299.99597 * 19 18 17 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 19 18 23 23 C 1.52997 * 109.47384 * 175.00066 * 11 10 9 24 24 C 1.53000 * 109.47026 * 300.00302 * 23 11 10 25 25 C 1.53006 * 109.47348 * 179.97438 * 24 23 11 26 26 C 1.53002 * 109.46794 * 59.99899 * 25 24 23 27 27 C 1.53000 * 109.47256 * 300.00157 * 26 25 24 28 28 C 1.52995 * 109.47627 * 180.02562 * 23 11 10 29 29 H 0.96994 * 119.99909 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00269 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46748 * 60.00109 * 10 9 7 32 32 H 1.09005 * 109.47061 * 300.00637 * 10 9 7 33 33 H 0.97003 * 120.00244 * 24.99931 * 13 11 10 34 34 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 35 35 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 36 36 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 37 37 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 39 39 H 1.08992 * 109.47554 * 59.99639 * 19 18 17 40 40 H 0.96699 * 114.00345 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.47097 * 180.02562 * 21 19 18 42 42 H 1.09001 * 109.47142 * 300.00176 * 21 19 18 43 43 H 1.09001 * 109.47375 * 59.99908 * 22 21 19 44 44 H 1.09000 * 109.47140 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.46969 * 59.99551 * 23 11 10 46 46 H 1.08996 * 109.47449 * 299.99885 * 24 23 11 47 47 H 1.09000 * 109.47501 * 60.00080 * 24 23 11 48 48 H 1.09004 * 109.46963 * 300.00132 * 25 24 23 49 49 H 1.08997 * 109.47147 * 180.02562 * 25 24 23 50 50 H 1.08993 * 109.46654 * 180.02562 * 26 25 24 51 51 H 1.08996 * 109.46895 * 60.00500 * 26 25 24 52 52 H 1.09004 * 109.47197 * 300.00192 * 27 26 25 53 53 H 1.09000 * 109.46985 * 179.97438 * 27 26 25 54 54 H 1.09002 * 109.46824 * 300.00578 * 28 23 11 55 55 H 1.09004 * 109.47080 * 60.00006 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4980 -4.8135 0.9327 13 7 0.1440 -4.6763 -1.1300 14 6 -1.0805 -5.2371 -1.0782 15 8 -1.4209 -5.8602 -0.0948 16 6 -2.0265 -5.0901 -2.2419 17 6 -3.3373 -5.8142 -1.9283 18 6 -4.2975 -5.6654 -3.1101 19 6 -3.6644 -6.2764 -4.3618 20 8 -4.5610 -6.1368 -5.4657 21 6 -2.3536 -5.5522 -4.6754 22 6 -1.3933 -5.7010 -3.4937 23 6 1.8246 -6.1412 -0.1245 24 6 2.6189 -6.1500 -1.4321 25 6 3.3802 -7.4713 -1.5576 26 6 2.3863 -8.6345 -1.5568 27 6 1.5920 -8.6258 -0.2491 28 6 0.8304 -7.3041 -0.1245 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6847 -3.7146 0.8906 32 1 2.6848 -3.7146 -0.8894 33 1 0.4161 -4.1777 -1.9163 34 1 -2.2281 -4.0330 -2.4149 35 1 -3.7882 -5.3792 -1.0363 36 1 -3.1360 -6.8713 -1.7550 37 1 -5.2316 -6.1809 -2.8864 38 1 -4.4990 -4.6083 -3.2838 39 1 -3.4629 -7.3333 -4.1881 40 1 -4.2239 -6.5027 -6.2949 41 1 -1.9026 -5.9872 -5.5674 42 1 -2.5550 -4.4952 -4.8491 43 1 -1.1919 -6.7581 -3.3200 44 1 -0.4593 -5.1856 -3.7173 45 1 2.5091 -6.2479 0.7170 46 1 1.9346 -6.0433 -2.2737 47 1 3.3273 -5.3216 -1.4326 48 1 4.0647 -7.5776 -0.7159 49 1 3.9464 -7.4773 -2.4889 50 1 2.9287 -9.5758 -1.6457 51 1 1.7020 -8.5282 -2.3984 52 1 2.2765 -8.7320 0.5925 53 1 0.8837 -9.4542 -0.2488 54 1 0.2641 -7.2980 0.8068 55 1 0.1463 -7.1973 -0.9664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714959713.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:46 Heat of formation + Delta-G solvation = -141.960282 kcal Electronic energy + Delta-G solvation = -31960.135771 eV Core-core repulsion = 27994.162225 eV Total energy + Delta-G solvation = -3965.973545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63790 -39.94686 -38.79431 -37.16405 -36.31086 -35.29297 -33.14276 -32.17917 -31.66984 -31.55715 -30.55016 -28.54867 -25.72123 -24.39981 -23.91645 -23.67450 -22.94974 -21.82709 -21.23868 -20.65674 -20.32453 -19.21828 -18.19851 -17.96645 -17.27414 -16.88791 -16.42913 -16.15674 -15.87035 -15.47206 -15.36602 -15.19514 -14.92360 -14.84310 -14.71154 -14.63946 -14.50143 -13.89786 -13.76018 -13.45859 -13.30750 -13.22037 -13.20195 -12.92673 -12.82039 -12.66184 -12.55420 -12.31438 -12.21346 -12.07671 -12.01881 -11.95441 -11.91102 -11.76054 -11.69705 -11.28823 -11.15648 -11.10725 -10.98003 -10.75853 -10.68551 -10.50692 -9.79062 -8.99429 -7.94409 -5.23430 1.47575 1.48634 1.58202 1.77595 2.32496 2.56006 3.26782 3.40325 3.62613 3.66154 3.72928 3.78637 3.85627 3.92853 4.11835 4.15445 4.20566 4.23250 4.30248 4.32024 4.39368 4.44921 4.50024 4.51543 4.53299 4.61506 4.69293 4.72048 4.76825 4.80648 4.84514 4.91735 4.96713 5.03054 5.06999 5.08252 5.17163 5.18153 5.18450 5.26739 5.29327 5.30680 5.35947 5.37107 5.42903 5.45860 5.51841 5.56531 5.64180 5.72880 6.26588 6.68883 6.94339 7.34056 7.38855 8.08053 8.31819 9.28851 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007624 B = 0.004187 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3671.617497 B = 6685.772601 C = 9294.419962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.298 1.298 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.145 3.855 11 C 0.153 3.847 12 H 0.052 0.948 13 N -0.701 5.701 14 C 0.517 3.483 15 O -0.574 6.574 16 C -0.106 4.106 17 C -0.086 4.086 18 C -0.111 4.111 19 C 0.107 3.893 20 O -0.586 6.586 21 C -0.143 4.143 22 C -0.098 4.098 23 C -0.084 4.084 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.095 4.095 29 H 0.249 0.751 30 H 0.374 0.626 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.406 0.594 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.394 0.606 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.058 0.942 52 H 0.061 0.939 53 H 0.059 0.941 54 H 0.039 0.961 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 -19.629 -11.314 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.019 3.981 11 C 0.048 3.952 12 H 0.070 0.930 13 N -0.352 5.352 14 C 0.305 3.695 15 O -0.454 6.454 16 C -0.128 4.128 17 C -0.124 4.124 18 C -0.149 4.149 19 C 0.048 3.952 20 O -0.394 6.394 21 C -0.180 4.180 22 C -0.136 4.136 23 C -0.104 4.104 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.132 4.132 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.241 0.759 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.244 0.756 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.077 0.923 52 H 0.079 0.921 53 H 0.078 0.922 54 H 0.058 0.942 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.076 -19.688 -10.152 22.151 hybrid contribution 0.203 1.467 -0.102 1.485 sum 0.280 -18.221 -10.255 20.910 Atomic orbital electron populations 1.69830 1.06634 1.25848 1.59579 1.25509 0.96249 1.00931 1.03750 0.85120 0.78368 0.80052 0.76473 1.18891 1.22023 1.22602 1.19655 0.91535 0.85145 1.40960 0.90397 1.42532 1.05622 1.00931 1.89401 1.21160 0.93598 0.84132 0.99242 1.21042 0.90113 0.94787 0.89285 0.92979 1.45883 1.14670 1.54447 1.20168 1.20886 0.82154 0.77717 0.88767 1.90659 1.76635 1.42980 1.35101 1.21393 0.94943 1.02561 0.93883 1.21166 0.93107 1.00808 0.97313 1.21464 0.98620 1.01630 0.93167 1.21795 0.88518 0.98533 0.86314 1.86481 1.46560 1.84854 1.21529 1.22207 0.95392 1.01945 0.98497 1.21411 0.98646 1.01557 0.91965 1.21427 0.96822 0.92723 0.99429 1.21582 0.98641 0.98140 0.96400 1.21508 0.97628 0.93859 1.02163 1.21494 0.97899 0.98584 0.97057 1.21563 0.98854 0.96601 0.98462 1.21474 0.96703 0.94044 1.01015 0.94173 0.79428 0.95372 0.93590 0.75903 0.88996 0.92492 0.91195 0.90949 0.92023 0.91647 0.75581 0.89065 0.91695 0.90731 0.90381 0.90579 0.91921 0.91830 0.91976 0.91041 0.91075 0.92302 0.92071 0.92211 0.94213 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.97 45.48 29.55 68.60 2.03 47.50 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.24 -13.04 9.99 84.04 0.84 -12.20 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -36.29 5.43 -343.44 -1.87 -38.16 16 10 C 0.15 5.45 5.60 86.38 0.48 5.93 16 11 C 0.15 5.01 2.16 44.99 0.10 5.11 16 12 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 13 N -0.70 -21.30 3.53 -442.54 -1.56 -22.86 16 14 C 0.52 16.05 5.51 87.66 0.48 16.53 16 15 O -0.57 -21.28 13.11 -3.05 -0.04 -21.32 16 16 C -0.11 -2.64 2.53 -11.54 -0.03 -2.67 16 17 C -0.09 -2.07 4.49 30.59 0.14 -1.94 16 18 C -0.11 -2.34 5.57 30.59 0.17 -2.17 16 19 C 0.11 1.84 3.47 30.59 0.11 1.94 16 20 O -0.59 -10.25 13.32 -148.98 -1.98 -12.23 16 21 C -0.14 -2.23 5.54 30.59 0.17 -2.06 16 22 C -0.10 -1.77 5.10 30.60 0.16 -1.62 16 23 C -0.08 -2.18 2.07 -10.80 -0.02 -2.20 16 24 C -0.11 -2.38 4.70 30.60 0.14 -2.24 16 25 C -0.11 -2.00 5.92 30.60 0.18 -1.82 16 26 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 27 C -0.12 -2.39 5.93 30.61 0.18 -2.21 16 28 C -0.09 -2.47 3.73 30.61 0.11 -2.35 16 29 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.37 19.94 7.33 -92.71 -0.68 19.26 16 31 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.05 1.61 6.18 -2.38 -0.01 1.59 16 33 H 0.41 11.77 8.02 -92.71 -0.74 11.02 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 36 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.39 3.28 9.08 -74.06 -0.67 2.61 16 41 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.34 7.57 -2.39 -0.02 1.32 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.06 1.34 7.60 -2.39 -0.02 1.32 16 47 H 0.06 1.45 6.32 -2.39 -0.02 1.43 16 48 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 53 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 54 H 0.04 1.24 7.53 -2.39 -0.02 1.23 16 55 H 0.05 1.49 5.78 -2.38 -0.01 1.48 16 Total: -1.00 -67.99 410.52 -0.50 -68.49 By element: Atomic # 1 Polarization: 47.51 SS G_CDS: -1.21 Total: 46.30 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 3.86 Total: -9.29 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -3.15 Total: -119.45 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -2.02 Total: -33.55 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.99 -0.50 -68.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714959713.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.474 kcal (2) G-P(sol) polarization free energy of solvation -67.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds