Wall clock time and date at job start Tue Mar 31 2020 21:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 C 1.52996 * 109.47759 * 239.99694 * 2 1 3 5 5 C 1.53009 * 109.47092 * 294.73385 * 4 2 1 6 6 H 1.09001 * 109.46905 * 54.17343 * 5 4 2 7 7 C 1.53002 * 109.46966 * 294.17778 * 5 4 2 8 8 N 1.46500 * 109.47117 * 184.99928 * 7 5 4 9 9 C 1.36937 * 119.99936 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99914 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99798 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99566 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00086 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47470 * 89.99640 * 13 11 9 15 15 H 1.48502 * 109.46987 * 209.99985 * 13 11 9 16 16 H 1.48498 * 109.47115 * 329.99658 * 13 11 9 17 17 N 1.46501 * 109.47016 * 174.17588 * 5 4 2 18 18 C 1.34770 * 119.99772 * 272.43659 * 17 5 4 19 19 O 1.21280 * 120.00532 * 4.95257 * 18 17 5 20 20 C 1.50700 * 119.99640 * 184.95477 * 18 17 5 21 21 N 1.46503 * 109.47206 * 179.97438 * 20 18 17 22 22 N 1.29018 * 126.43845 * 90.02373 * 21 20 18 23 23 N 1.28736 * 108.80935 * 179.97438 * 22 21 20 24 24 N 1.28846 * 109.39923 * 359.97438 * 23 22 21 25 25 C 1.31071 * 107.98636 * 359.75065 * 24 23 22 26 26 C 1.50707 * 126.65956 * 180.23696 * 25 24 23 27 27 C 1.52999 * 109.47326 * 300.17939 * 26 25 24 28 28 C 1.53006 * 109.46435 * 60.17691 * 26 25 24 29 29 H 1.09000 * 109.47441 * 296.34180 * 1 2 3 30 30 H 1.08998 * 109.47178 * 56.34845 * 1 2 3 31 31 H 1.09005 * 109.46864 * 176.34458 * 1 2 3 32 32 H 1.09005 * 109.46854 * 119.99635 * 2 1 3 33 33 H 1.09001 * 109.47289 * 59.99553 * 3 2 1 34 34 H 1.08996 * 109.47400 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.46901 * 299.99606 * 3 2 1 36 36 H 1.09003 * 109.46948 * 54.72867 * 4 2 1 37 37 H 1.08995 * 109.47702 * 174.73420 * 4 2 1 38 38 H 1.09002 * 109.46683 * 305.00174 * 7 5 4 39 39 H 1.09001 * 109.47070 * 65.00018 * 7 5 4 40 40 H 0.97000 * 120.00133 * 359.97438 * 8 7 5 41 41 H 0.96999 * 119.99742 * 179.97438 * 12 11 9 42 42 H 0.96994 * 119.99583 * 92.44023 * 17 5 4 43 43 H 1.08996 * 109.47584 * 300.00205 * 20 18 17 44 44 H 1.09005 * 109.47379 * 60.00283 * 20 18 17 45 45 H 1.08996 * 109.47320 * 180.17198 * 26 25 24 46 46 H 1.09000 * 109.46823 * 59.99485 * 27 26 25 47 47 H 1.08997 * 109.47199 * 179.97438 * 27 26 25 48 48 H 1.09006 * 109.46957 * 299.99591 * 27 26 25 49 49 H 1.08998 * 109.46987 * 59.99994 * 28 26 25 50 50 H 1.08997 * 109.46675 * 179.97438 * 28 26 25 51 51 H 1.08996 * 109.46964 * 299.99725 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6411 -2.1970 -1.1846 6 1 0.5647 -2.2760 -1.0323 7 6 2.3716 -2.8725 -0.0222 8 7 2.0831 -4.3087 -0.0328 9 6 2.6318 -5.1243 0.9206 10 1 3.2775 -4.7087 1.6801 11 6 2.3580 -6.4851 0.9110 12 7 2.8858 -7.2690 1.8271 13 14 1.2417 -7.2039 -0.4030 14 1 2.0563 -7.6119 -1.5757 15 1 0.5329 -8.3888 0.1437 16 1 0.2484 -6.1825 -0.8216 17 7 2.0064 -2.8570 -2.4405 18 6 1.1464 -2.8541 -3.4782 19 8 0.1092 -2.2300 -3.4045 20 6 1.4736 -3.6267 -4.7300 21 7 0.3885 -3.4654 -5.7010 22 7 0.2958 -2.5455 -6.6009 23 7 -0.7910 -2.7247 -7.2672 24 7 -1.4093 -3.7576 -6.8078 25 6 -0.6957 -4.2532 -5.8265 26 6 -1.0269 -5.4669 -4.9967 27 6 -2.3635 -5.2487 -4.2848 28 6 -1.1274 -6.6938 -5.9053 29 1 -0.3634 0.4560 0.9209 30 1 -0.3633 0.5695 -0.8554 31 1 -0.3633 -1.0256 -0.0655 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6018 -0.2649 -2.1367 37 1 3.1260 -0.6403 -1.2975 38 1 3.4452 -2.7166 -0.1282 39 1 2.0330 -2.4407 0.9196 40 1 1.5034 -4.6820 -0.7151 41 1 2.6942 -8.2199 1.8206 42 1 2.8672 -3.2959 -2.5251 43 1 2.4029 -3.2497 -5.1572 44 1 1.5881 -4.6828 -4.4858 45 1 -0.2427 -5.6261 -4.2566 46 1 -3.1476 -5.0894 -5.0250 47 1 -2.6033 -6.1266 -3.6850 48 1 -2.2919 -4.3745 -3.6375 49 1 -0.1752 -6.8492 -6.4125 50 1 -1.3665 -7.5717 -5.3052 51 1 -1.9115 -6.5345 -6.6454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715394605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:00 Heat of formation + Delta-G solvation = 73.391542 kcal Electronic energy + Delta-G solvation = -31076.002222 eV Core-core repulsion = 27048.119440 eV Total energy + Delta-G solvation = -4027.882782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.29642 -40.21748 -37.69615 -36.35168 -35.48801 -35.15402 -33.92296 -31.76152 -31.46426 -30.18076 -28.60038 -27.45346 -27.16596 -25.95464 -24.56566 -23.79983 -22.58517 -21.77266 -21.04096 -20.62552 -19.70604 -18.36677 -17.98517 -17.50283 -16.49710 -16.16294 -15.87132 -15.58486 -15.32536 -14.77615 -14.56120 -14.26412 -14.06789 -13.91098 -13.50882 -13.48714 -13.26056 -12.96928 -12.90434 -12.66047 -12.43864 -12.37161 -12.30560 -12.21228 -11.93007 -11.89936 -11.59594 -11.50950 -11.44397 -11.43606 -11.11482 -11.06276 -10.99459 -10.95594 -10.64866 -10.49493 -10.30723 -10.16562 -9.95431 -9.77388 -9.18033 -9.06703 -7.43904 -5.93335 -3.30687 1.06373 1.64012 2.17268 2.20563 2.89960 3.15892 3.19714 3.29348 3.67984 3.92987 4.22585 4.26291 4.41074 4.44359 4.70389 4.72722 4.81114 4.85193 4.93648 4.96730 5.13331 5.23130 5.29074 5.34513 5.40044 5.48691 5.51096 5.57151 5.59735 5.61211 5.62262 5.65650 5.70457 5.77106 5.88900 5.90892 5.92138 5.95772 6.00808 6.03834 6.10053 6.17246 6.30820 6.36492 6.44931 6.57370 7.24240 7.80618 7.88095 8.24785 8.52391 9.02244 9.73934 9.92671 11.24815 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.007530 B = 0.004926 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3717.502791 B = 5682.267092 C = 8545.770543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.120 4.120 5 C 0.132 3.868 6 H 0.094 0.906 7 C 0.149 3.851 8 N -0.754 5.754 9 C -0.249 4.249 10 H 0.092 0.908 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.878 3.122 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.277 1.277 17 N -0.705 5.705 18 C 0.500 3.500 19 O -0.521 6.521 20 C 0.088 3.912 21 N -0.293 5.293 22 N -0.087 5.087 23 N -0.076 5.076 24 N -0.301 5.301 25 C 0.207 3.793 26 C -0.015 4.015 27 C -0.144 4.144 28 C -0.144 4.144 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.360 0.640 41 H 0.261 0.739 42 H 0.408 0.592 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.075 0.925 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 7.671 -11.298 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.159 4.159 5 C 0.028 3.972 6 H 0.112 0.888 7 C 0.021 3.979 8 N -0.400 5.400 9 C -0.378 4.378 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.577 5.577 13 Si 0.708 3.292 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.203 1.203 17 N -0.357 5.357 18 C 0.282 3.718 19 O -0.396 6.396 20 C -0.038 4.038 21 N -0.093 5.093 22 N -0.073 5.073 23 N -0.069 5.069 24 N -0.149 5.149 25 C -0.071 4.071 26 C -0.037 4.037 27 C -0.202 4.202 28 C -0.202 4.202 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.193 0.807 41 H 0.071 0.929 42 H 0.243 0.757 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.157 8.990 -12.083 15.388 hybrid contribution 0.128 -1.359 -0.044 1.366 sum -3.029 7.630 -12.127 14.644 Atomic orbital electron populations 1.21881 0.95180 1.02191 1.01306 1.21132 0.96071 0.96027 0.98347 1.21820 1.00823 0.96042 1.01518 1.21959 1.01127 0.94168 0.98616 1.21548 1.01645 0.91571 0.82391 0.88822 1.21024 0.97167 0.85091 0.94623 1.42677 1.59158 1.02803 1.35398 1.19036 1.23670 0.88961 1.06180 0.89062 1.24671 0.99886 0.96046 0.98193 1.69688 1.47862 1.04587 1.35536 0.86640 0.81150 0.78996 0.82400 1.20974 1.21464 1.20344 1.45923 1.20117 1.56673 1.12974 1.20211 0.84935 0.82094 0.84524 1.90808 1.25158 1.42460 1.81184 1.22062 0.89538 1.04860 0.87382 1.47831 1.18414 1.19016 1.24050 1.78853 1.17505 1.10750 1.00173 1.78576 0.99116 1.10241 1.19009 1.74947 1.23878 1.06425 1.09674 1.26090 0.85569 0.97699 0.97784 1.19846 1.00755 0.87935 0.95171 1.21828 0.94696 1.03040 1.00645 1.21853 1.02985 0.95697 0.99638 0.92894 0.92940 0.92243 0.90224 0.92740 0.92736 0.93000 0.91571 0.91480 0.94713 0.93532 0.80693 0.92893 0.75675 0.83869 0.84163 0.89057 0.91052 0.90741 0.91839 0.92346 0.90621 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.04 37.16 0.34 -1.41 16 2 C -0.10 -1.08 2.80 -90.63 -0.25 -1.33 16 3 C -0.14 -1.39 9.19 37.16 0.34 -1.05 16 4 C -0.12 -1.39 4.45 -26.73 -0.12 -1.50 16 5 C 0.13 1.77 2.08 -67.92 -0.14 1.63 16 6 H 0.09 1.46 5.68 -51.93 -0.30 1.16 16 7 C 0.15 2.39 5.49 -4.04 -0.02 2.36 16 8 N -0.75 -15.48 5.24 -59.91 -0.31 -15.80 16 9 C -0.25 -6.38 10.47 -15.06 -0.16 -6.54 16 10 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 11 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 12 N -0.93 -27.41 13.97 55.49 0.78 -26.63 16 13 Si 0.88 19.84 27.74 -169.99 -4.71 15.13 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 16 H -0.28 -5.88 6.52 56.52 0.37 -5.51 16 17 N -0.71 -8.21 4.49 -53.80 -0.24 -8.45 16 18 C 0.50 6.21 7.88 -10.99 -0.09 6.12 16 19 O -0.52 -8.58 16.10 5.56 0.09 -8.50 16 20 C 0.09 0.82 6.58 -5.19 -0.03 0.78 16 21 N -0.29 -3.76 2.83 -59.44 -0.17 -3.93 16 22 N -0.09 -1.33 13.29 60.35 0.80 -0.53 16 23 N -0.08 -1.25 13.43 60.35 0.81 -0.44 16 24 N -0.30 -4.64 12.36 32.70 0.40 -4.23 16 25 C 0.21 2.73 6.64 -155.43 -1.03 1.70 16 26 C -0.02 -0.16 3.26 -91.77 -0.30 -0.46 16 27 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 28 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 32 H 0.08 0.93 6.47 -51.93 -0.34 0.59 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.78 6.72 -51.93 -0.35 0.43 16 40 H 0.36 7.24 5.20 -40.82 -0.21 7.03 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.41 3.94 8.63 -40.82 -0.35 3.59 16 43 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.14 0.91 7.11 -51.93 -0.37 0.54 16 45 H 0.09 0.89 6.84 -51.93 -0.36 0.54 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 413.36 15.07 6.23 6.23 Total: -1.00 -34.01 413.36 -5.74 -39.75 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.53 Total: 9.11 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.88 Total: -1.71 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 2.07 Total: -60.02 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.71 Total: 15.13 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.01 -5.74 -39.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715394605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.143 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds