Wall clock time and date at job start Tue Mar 31 2020 20:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 120.00609 * 2 1 4 4 H 1.08000 * 120.00731 * 185.79593 * 3 2 1 5 5 C 1.38815 * 119.99759 * 5.80033 * 3 2 1 6 6 N 1.31625 * 119.99819 * 5.99696 * 5 3 2 7 7 Si 1.86800 * 120.00290 * 185.99888 * 5 3 2 8 8 H 1.48502 * 109.47073 * 89.99750 * 7 5 3 9 9 H 1.48497 * 109.47366 * 209.99706 * 7 5 3 10 10 H 1.48500 * 109.46838 * 330.00203 * 7 5 3 11 11 C 1.46505 * 119.99956 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46867 * 94.24434 * 11 2 1 13 13 H 1.09002 * 110.00142 * 306.79672 * 12 11 2 14 14 C 1.54312 * 109.77646 * 67.95522 * 12 11 2 15 15 C 1.55156 * 102.86669 * 141.88350 * 14 12 11 16 16 C 1.54914 * 101.57789 * 324.30495 * 15 14 12 17 17 N 1.47019 * 109.87837 * 185.70362 * 12 11 2 18 18 C 1.34772 * 125.65055 * 61.68472 * 17 12 11 19 19 O 1.21278 * 120.00233 * 354.85473 * 18 17 12 20 20 C 1.50705 * 120.00266 * 174.85515 * 18 17 12 21 21 H 1.08997 * 109.49603 * 299.93109 * 20 18 17 22 22 C 1.53041 * 109.50013 * 179.83658 * 20 18 17 23 23 C 1.53035 * 109.53889 * 178.68451 * 22 20 18 24 24 C 1.53196 * 109.31215 * 61.36425 * 23 22 20 25 25 N 1.46922 * 108.77475 * 305.36157 * 24 23 22 26 26 C 1.34775 * 120.63394 * 233.58505 * 25 24 23 27 27 N 1.34781 * 119.99782 * 4.98744 * 26 25 24 28 28 O 1.21586 * 120.00243 * 184.98922 * 26 25 24 29 29 C 1.46925 * 118.73695 * 53.61386 * 25 24 23 30 30 H 1.08999 * 109.47405 * 174.71398 * 1 2 3 31 31 H 1.09005 * 109.47454 * 294.72042 * 1 2 3 32 32 H 1.09009 * 109.46782 * 54.71584 * 1 2 3 33 33 H 0.96996 * 120.00048 * 180.02562 * 6 5 3 34 34 H 1.08995 * 109.46986 * 334.24689 * 11 2 1 35 35 H 1.08997 * 109.47245 * 214.24609 * 11 2 1 36 36 H 1.09008 * 110.92233 * 23.47092 * 14 12 11 37 37 H 1.08995 * 110.74422 * 260.21671 * 14 12 11 38 38 H 1.08997 * 111.00585 * 206.23637 * 15 14 12 39 39 H 1.08997 * 111.00438 * 82.37887 * 15 14 12 40 40 H 1.09003 * 110.36906 * 278.16590 * 16 15 14 41 41 H 1.08999 * 110.36488 * 155.84742 * 16 15 14 42 42 H 1.09008 * 109.45630 * 298.70154 * 22 20 18 43 43 H 1.08999 * 109.46077 * 58.66133 * 22 20 18 44 44 H 1.08999 * 109.49896 * 301.41286 * 23 22 20 45 45 H 1.09003 * 109.49667 * 181.31107 * 23 22 20 46 46 H 1.09005 * 109.58306 * 185.57615 * 24 23 22 47 47 H 1.09004 * 109.58587 * 65.15442 * 24 23 22 48 48 H 0.96998 * 119.99555 * 5.07283 * 27 26 25 49 49 H 0.96999 * 120.00123 * 185.05843 * 27 26 25 50 50 H 1.09003 * 109.58932 * 186.60161 * 29 25 24 51 51 H 1.09001 * 109.70860 * 66.24450 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.2256 1.1883 -0.0944 5 6 1.4611 2.3850 0.1215 6 7 0.1657 2.3792 0.3549 7 14 2.3727 4.0068 -0.0462 8 1 2.3660 4.4336 -1.4686 9 1 1.7021 5.0397 0.7836 10 1 3.7746 3.8363 0.4128 11 6 2.1975 -1.2688 0.0006 12 6 2.5449 -1.6577 -1.4378 13 1 1.6451 -1.6530 -2.0530 14 6 3.5806 -0.6676 -2.0107 15 6 4.5046 -1.5843 -2.8552 16 6 4.5253 -2.8765 -2.0011 17 7 3.1589 -2.9933 -1.4602 18 6 2.5683 -4.1362 -1.0583 19 8 1.4690 -4.1035 -0.5471 20 6 3.2738 -5.4548 -1.2443 21 1 3.4663 -5.6181 -2.3046 22 6 2.3947 -6.5851 -0.7041 23 6 3.0960 -7.9278 -0.9222 24 6 4.4218 -7.9374 -0.1547 25 7 5.2137 -6.7695 -0.5641 26 6 6.4778 -6.9181 -1.0073 27 7 6.9928 -8.1524 -1.1738 28 8 7.1536 -5.9386 -1.2570 29 6 4.6016 -5.4365 -0.4804 30 1 -0.3634 -1.0233 -0.0947 31 1 -0.3634 0.4298 0.9335 32 1 -0.3633 0.5937 -0.8390 33 1 -0.3156 3.2171 0.4394 34 1 1.5776 -2.0460 0.4474 35 1 3.1148 -1.1585 0.5788 36 1 4.1425 -0.1856 -1.2105 37 1 3.0951 0.0770 -2.6416 38 1 5.5038 -1.1578 -2.9427 39 1 4.0745 -1.7729 -3.8388 40 1 5.2477 -2.7837 -1.1901 41 1 4.7618 -3.7391 -2.6240 42 1 2.2231 -6.4340 0.3617 43 1 1.4395 -6.5849 -1.2292 44 1 3.2902 -8.0683 -1.9855 45 1 2.4592 -8.7342 -0.5584 46 1 4.9709 -8.8503 -0.3854 47 1 4.2244 -7.8880 0.9162 48 1 6.4318 -8.9333 -1.0457 49 1 7.9244 -8.2598 -1.4220 50 1 5.2693 -4.6991 -0.9261 51 1 4.4192 -5.1806 0.5633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717368762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:09 Heat of formation + Delta-G solvation = -24.276178 kcal Electronic energy + Delta-G solvation = -31389.064287 eV Core-core repulsion = 27324.653564 eV Total energy + Delta-G solvation = -4064.410723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.92242 -39.83573 -37.88215 -36.85749 -35.26864 -34.30083 -32.63481 -32.19929 -31.31642 -30.69211 -28.82889 -25.85174 -25.69251 -25.34858 -24.47475 -22.66877 -21.78219 -21.12167 -20.16409 -19.86374 -18.84590 -18.39036 -17.29757 -16.93930 -16.72890 -16.03347 -15.54825 -15.45694 -15.04616 -14.80666 -14.63692 -14.41460 -13.73411 -13.68889 -13.56865 -13.34225 -13.27972 -13.21862 -12.84902 -12.65411 -12.39894 -12.06365 -11.81792 -11.68524 -11.32127 -11.25235 -11.12923 -10.92556 -10.85458 -10.71494 -10.66622 -10.48748 -10.39188 -10.26967 -10.03789 -10.02404 -9.78043 -9.59442 -9.38319 -8.92926 -8.55653 -8.28400 -6.77527 -5.53970 -2.98266 2.37624 2.81477 2.93859 3.21105 3.43075 3.48482 3.50369 3.72989 4.31482 4.44252 4.55475 4.57243 4.65882 4.72561 4.83516 4.94828 5.05552 5.15653 5.21073 5.32850 5.39501 5.48347 5.50270 5.53399 5.57550 5.69913 5.73664 5.77910 5.87867 5.91682 6.02882 6.04885 6.09115 6.15403 6.39631 6.41680 6.45624 6.57582 6.64553 6.70996 6.88147 6.98072 7.06808 7.50462 7.72110 7.82370 7.84767 8.05060 8.29267 8.41160 8.48289 9.36376 10.00276 10.44964 11.44802 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019213 B = 0.002897 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.009370 B = 9662.111778 C =10561.126011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.606 5.606 3 C -0.240 4.240 4 H 0.075 0.925 5 C -0.008 4.008 6 N -0.918 5.918 7 Si 0.905 3.095 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.148 3.852 12 C 0.116 3.884 13 H 0.068 0.932 14 C -0.109 4.109 15 C -0.138 4.138 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.530 3.470 19 O -0.531 6.531 20 C -0.118 4.118 21 H 0.096 0.904 22 C -0.100 4.100 23 C -0.135 4.135 24 C 0.109 3.891 25 N -0.626 5.626 26 C 0.709 3.291 27 N -0.869 5.869 28 O -0.590 6.590 29 C 0.130 3.870 30 H -0.006 1.006 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.248 0.752 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.395 0.605 49 H 0.413 0.587 50 H 0.107 0.893 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.928 -24.824 -5.083 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.329 5.329 3 C -0.369 4.369 4 H 0.093 0.907 5 C -0.204 4.204 6 N -0.566 5.566 7 Si 0.736 3.264 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.207 1.207 11 C 0.019 3.981 12 C 0.011 3.989 13 H 0.086 0.914 14 C -0.147 4.147 15 C -0.176 4.176 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.317 3.683 19 O -0.408 6.408 20 C -0.140 4.140 21 H 0.114 0.886 22 C -0.138 4.138 23 C -0.173 4.173 24 C -0.014 4.014 25 N -0.364 5.364 26 C 0.409 3.591 27 N -0.440 5.440 28 O -0.467 6.467 29 C 0.007 3.993 30 H 0.013 0.987 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.226 0.774 49 H 0.245 0.755 50 H 0.125 0.875 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.482 -23.951 -4.841 26.588 hybrid contribution 0.560 0.445 -0.312 0.781 sum 11.042 -23.505 -5.153 26.476 Atomic orbital electron populations 1.21021 0.81617 0.93237 1.01645 1.43989 1.02397 1.00370 1.86144 1.19337 0.91216 0.83670 1.42721 0.90703 1.24866 0.95923 0.97770 1.01848 1.70219 1.06600 1.24523 1.55237 0.86223 0.78675 0.84026 0.77474 1.21703 1.21864 1.20710 1.21032 0.96131 0.88805 0.92116 1.22693 0.95585 0.79121 1.01541 0.91385 1.22606 0.96047 0.96681 0.99394 1.22849 1.00913 0.95312 0.98558 1.22433 0.84197 0.98719 0.97230 1.48765 1.15347 1.07631 1.62648 1.19897 0.85934 0.84007 0.78450 1.90721 1.20576 1.86482 1.42972 1.21685 0.96216 0.93872 1.02264 0.88566 1.21329 0.98139 0.91634 1.02686 1.21965 0.96007 0.98432 1.00943 1.21721 0.92365 0.87667 0.99690 1.47231 1.12457 1.08118 1.68587 1.15845 0.81505 0.83932 0.77831 1.43165 1.16165 1.06587 1.78054 1.90979 1.59674 1.37912 1.58160 1.21641 0.92903 0.83852 1.00938 0.98722 0.93406 0.94852 0.94085 0.92604 0.94249 0.90164 0.89980 0.90227 0.91209 0.91056 0.91120 0.90649 0.90508 0.91391 0.90085 0.90463 0.90783 0.77425 0.75475 0.87483 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.51 8.98 59.84 0.54 5.05 16 2 N -0.61 -15.76 2.92 -181.11 -0.53 -16.29 16 3 C -0.24 -6.55 8.83 -15.06 -0.13 -6.69 16 4 H 0.08 1.95 6.43 -52.49 -0.34 1.61 16 5 C -0.01 -0.23 5.41 -17.43 -0.09 -0.32 16 6 N -0.92 -27.28 9.56 55.49 0.53 -26.75 16 7 Si 0.91 22.15 29.56 -169.99 -5.02 17.12 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.15 3.27 5.19 -4.04 -0.02 3.25 16 12 C 0.12 2.17 3.14 -66.96 -0.21 1.96 16 13 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 14 C -0.11 -1.86 5.38 -24.90 -0.13 -1.99 16 15 C -0.14 -1.79 7.08 -24.58 -0.17 -1.96 16 16 C 0.10 1.24 5.10 -2.53 -0.01 1.23 16 17 N -0.61 -9.51 3.06 -163.02 -0.50 -10.01 16 18 C 0.53 8.22 7.05 -10.99 -0.08 8.14 16 19 O -0.53 -10.24 14.76 5.56 0.08 -10.16 16 20 C -0.12 -1.31 2.02 -91.65 -0.19 -1.50 16 21 H 0.10 1.01 7.95 -51.93 -0.41 0.59 16 22 C -0.10 -0.96 4.46 -26.69 -0.12 -1.08 16 23 C -0.14 -0.82 6.08 -26.61 -0.16 -0.98 16 24 C 0.11 0.62 6.43 -3.71 -0.02 0.59 16 25 N -0.63 -5.62 2.97 -178.49 -0.53 -6.15 16 26 C 0.71 7.31 8.57 -86.92 -0.75 6.56 16 27 N -0.87 -5.00 8.77 27.63 0.24 -4.75 16 28 O -0.59 -8.68 16.61 5.29 0.09 -8.59 16 29 C 0.13 1.42 5.36 -3.71 -0.02 1.40 16 30 H -0.01 -0.15 7.79 -51.93 -0.40 -0.55 16 31 H 0.05 1.38 6.85 -51.93 -0.36 1.02 16 32 H 0.03 0.94 7.27 -51.92 -0.38 0.56 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.06 1.30 6.27 -51.93 -0.33 0.98 16 35 H 0.04 0.87 7.93 -51.93 -0.41 0.46 16 36 H 0.08 1.46 6.40 -51.92 -0.33 1.12 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.90 7.40 -51.93 -0.38 0.52 16 41 H 0.07 0.80 7.00 -51.93 -0.36 0.43 16 42 H 0.07 0.79 8.13 -51.92 -0.42 0.37 16 43 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.22 5.58 -51.93 -0.29 -0.07 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.40 1.13 6.32 -40.82 -0.26 0.87 16 49 H 0.41 1.95 8.93 -40.82 -0.36 1.58 16 50 H 0.11 1.30 3.88 -51.93 -0.20 1.10 16 51 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -35.16 384.29 -9.60 -44.76 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.18 Total: 1.35 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -1.57 Total: 13.68 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.79 Total: -63.96 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.16 -9.60 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.489 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds