Wall clock time and date at job start Tue Mar 31 2020 20:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 120.00609 * 2 1 4 4 H 1.08000 * 120.00731 * 185.79593 * 3 2 1 5 5 C 1.38815 * 119.99759 * 5.80033 * 3 2 1 6 6 N 1.31625 * 119.99819 * 5.99696 * 5 3 2 7 7 Si 1.86800 * 120.00290 * 185.99888 * 5 3 2 8 8 H 1.48502 * 109.47073 * 89.99750 * 7 5 3 9 9 H 1.48497 * 109.47366 * 209.99706 * 7 5 3 10 10 H 1.48500 * 109.46838 * 330.00203 * 7 5 3 11 11 C 1.46505 * 119.99956 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46867 * 94.24434 * 11 2 1 13 13 H 1.09002 * 110.00142 * 306.79672 * 12 11 2 14 14 C 1.54312 * 109.77646 * 67.95522 * 12 11 2 15 15 C 1.55156 * 102.86669 * 141.88350 * 14 12 11 16 16 C 1.54914 * 101.57789 * 324.30495 * 15 14 12 17 17 N 1.47019 * 109.87837 * 185.70362 * 12 11 2 18 18 C 1.34772 * 125.65055 * 61.68472 * 17 12 11 19 19 O 1.21278 * 120.00233 * 354.85473 * 18 17 12 20 20 C 1.50705 * 120.00266 * 174.85515 * 18 17 12 21 21 H 1.08997 * 109.49603 * 299.93109 * 20 18 17 22 22 C 1.53041 * 109.50013 * 179.83658 * 20 18 17 23 23 C 1.53035 * 109.53889 * 178.68451 * 22 20 18 24 24 C 1.53196 * 109.31215 * 61.36425 * 23 22 20 25 25 N 1.46922 * 108.77475 * 305.36157 * 24 23 22 26 26 C 1.34775 * 120.63394 * 233.58505 * 25 24 23 27 27 N 1.34781 * 119.99782 * 4.98744 * 26 25 24 28 28 O 1.21586 * 120.00243 * 184.98922 * 26 25 24 29 29 C 1.46925 * 118.73695 * 53.61386 * 25 24 23 30 30 H 1.08999 * 109.47405 * 174.71398 * 1 2 3 31 31 H 1.09005 * 109.47454 * 294.72042 * 1 2 3 32 32 H 1.09009 * 109.46782 * 54.71584 * 1 2 3 33 33 H 0.96996 * 120.00048 * 180.02562 * 6 5 3 34 34 H 1.08995 * 109.46986 * 334.24689 * 11 2 1 35 35 H 1.08997 * 109.47245 * 214.24609 * 11 2 1 36 36 H 1.09008 * 110.92233 * 23.47092 * 14 12 11 37 37 H 1.08995 * 110.74422 * 260.21671 * 14 12 11 38 38 H 1.08997 * 111.00585 * 206.23637 * 15 14 12 39 39 H 1.08997 * 111.00438 * 82.37887 * 15 14 12 40 40 H 1.09003 * 110.36906 * 278.16590 * 16 15 14 41 41 H 1.08999 * 110.36488 * 155.84742 * 16 15 14 42 42 H 1.09008 * 109.45630 * 298.70154 * 22 20 18 43 43 H 1.08999 * 109.46077 * 58.66133 * 22 20 18 44 44 H 1.08999 * 109.49896 * 301.41286 * 23 22 20 45 45 H 1.09003 * 109.49667 * 181.31107 * 23 22 20 46 46 H 1.09005 * 109.58306 * 185.57615 * 24 23 22 47 47 H 1.09004 * 109.58587 * 65.15442 * 24 23 22 48 48 H 0.96998 * 119.99555 * 5.07283 * 27 26 25 49 49 H 0.96999 * 120.00123 * 185.05843 * 27 26 25 50 50 H 1.09003 * 109.58932 * 186.60161 * 29 25 24 51 51 H 1.09001 * 109.70860 * 66.24450 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.2256 1.1883 -0.0944 5 6 1.4611 2.3850 0.1215 6 7 0.1657 2.3792 0.3549 7 14 2.3727 4.0068 -0.0462 8 1 2.3660 4.4336 -1.4686 9 1 1.7021 5.0397 0.7836 10 1 3.7746 3.8363 0.4128 11 6 2.1975 -1.2688 0.0006 12 6 2.5449 -1.6577 -1.4378 13 1 1.6451 -1.6530 -2.0530 14 6 3.5806 -0.6676 -2.0107 15 6 4.5046 -1.5843 -2.8552 16 6 4.5253 -2.8765 -2.0011 17 7 3.1589 -2.9933 -1.4602 18 6 2.5683 -4.1362 -1.0583 19 8 1.4690 -4.1035 -0.5471 20 6 3.2738 -5.4548 -1.2443 21 1 3.4663 -5.6181 -2.3046 22 6 2.3947 -6.5851 -0.7041 23 6 3.0960 -7.9278 -0.9222 24 6 4.4218 -7.9374 -0.1547 25 7 5.2137 -6.7695 -0.5641 26 6 6.4778 -6.9181 -1.0073 27 7 6.9928 -8.1524 -1.1738 28 8 7.1536 -5.9386 -1.2570 29 6 4.6016 -5.4365 -0.4804 30 1 -0.3634 -1.0233 -0.0947 31 1 -0.3634 0.4298 0.9335 32 1 -0.3633 0.5937 -0.8390 33 1 -0.3156 3.2171 0.4394 34 1 1.5776 -2.0460 0.4474 35 1 3.1148 -1.1585 0.5788 36 1 4.1425 -0.1856 -1.2105 37 1 3.0951 0.0770 -2.6416 38 1 5.5038 -1.1578 -2.9427 39 1 4.0745 -1.7729 -3.8388 40 1 5.2477 -2.7837 -1.1901 41 1 4.7618 -3.7391 -2.6240 42 1 2.2231 -6.4340 0.3617 43 1 1.4395 -6.5849 -1.2292 44 1 3.2902 -8.0683 -1.9855 45 1 2.4592 -8.7342 -0.5584 46 1 4.9709 -8.8503 -0.3854 47 1 4.2244 -7.8880 0.9162 48 1 6.4318 -8.9333 -1.0457 49 1 7.9244 -8.2598 -1.4220 50 1 5.2693 -4.6991 -0.9261 51 1 4.4192 -5.1806 0.5633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717368762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:08 Heat of formation + Delta-G solvation = -49.445488 kcal Electronic energy + Delta-G solvation = -31390.155710 eV Core-core repulsion = 27324.653564 eV Total energy + Delta-G solvation = -4065.502146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.86442 -40.90500 -39.05360 -37.92259 -37.18587 -35.06722 -33.61883 -33.31571 -32.92174 -31.74394 -30.43285 -28.00829 -26.90327 -26.39125 -25.66363 -23.76415 -22.88054 -22.67454 -21.49607 -20.61600 -19.92799 -19.22344 -18.86100 -18.17424 -17.88319 -17.32154 -16.76749 -16.46263 -16.34984 -15.81804 -15.64755 -15.40950 -15.35305 -15.05498 -14.85255 -14.52741 -14.42473 -14.18081 -14.11207 -13.97946 -13.84975 -13.46884 -13.34322 -12.88777 -12.81990 -12.63300 -12.49520 -12.30728 -12.15926 -12.04427 -11.99035 -11.90252 -11.84539 -11.62029 -11.50108 -11.43664 -11.29640 -10.75512 -10.66467 -10.66162 -9.77413 -9.63009 -8.88258 -7.70895 -5.18070 1.47060 1.48461 1.49975 1.58093 1.79688 1.99544 2.15125 2.54026 3.21416 3.36327 3.43334 3.61353 3.68041 3.78210 3.81645 3.87457 4.02128 4.06017 4.11719 4.19490 4.30549 4.42134 4.48092 4.51948 4.56417 4.64073 4.73437 4.77417 4.77820 4.87427 4.89694 4.95585 5.04011 5.08170 5.10692 5.15407 5.17467 5.37412 5.38341 5.40595 5.44469 5.52456 5.64716 5.79803 5.84962 6.05270 6.30034 6.58548 6.92950 7.14188 7.17930 7.63344 7.88136 8.31340 9.28173 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019213 B = 0.002897 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.009370 B = 9662.111778 C =10561.126011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.620 5.620 3 C -0.240 4.240 4 H 0.088 0.912 5 C -0.069 4.069 6 N -0.952 5.952 7 Si 0.974 3.026 8 H -0.285 1.285 9 H -0.300 1.300 10 H -0.266 1.266 11 C 0.154 3.846 12 C 0.126 3.874 13 H 0.041 0.959 14 C -0.107 4.107 15 C -0.124 4.124 16 C 0.099 3.901 17 N -0.610 5.610 18 C 0.524 3.476 19 O -0.576 6.576 20 C -0.102 4.102 21 H 0.111 0.889 22 C -0.100 4.100 23 C -0.124 4.124 24 C 0.104 3.896 25 N -0.623 5.623 26 C 0.703 3.297 27 N -0.847 5.847 28 O -0.638 6.638 29 C 0.135 3.865 30 H 0.005 0.995 31 H 0.022 0.978 32 H 0.011 0.989 33 H 0.243 0.757 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.078 0.922 48 H 0.412 0.588 49 H 0.421 0.579 50 H 0.097 0.903 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.676 -27.340 -6.221 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.344 5.344 3 C -0.370 4.370 4 H 0.106 0.894 5 C -0.261 4.261 6 N -0.602 5.602 7 Si 0.802 3.198 8 H -0.212 1.212 9 H -0.227 1.227 10 H -0.190 1.190 11 C 0.027 3.973 12 C 0.020 3.980 13 H 0.059 0.941 14 C -0.145 4.145 15 C -0.162 4.162 16 C -0.023 4.023 17 N -0.343 5.343 18 C 0.313 3.687 19 O -0.455 6.455 20 C -0.124 4.124 21 H 0.129 0.871 22 C -0.138 4.138 23 C -0.162 4.162 24 C -0.018 4.018 25 N -0.361 5.361 26 C 0.403 3.597 27 N -0.419 5.419 28 O -0.520 6.520 29 C 0.011 3.989 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.131 0.869 47 H 0.096 0.904 48 H 0.245 0.755 49 H 0.254 0.746 50 H 0.115 0.885 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.280 -26.573 -5.993 30.305 hybrid contribution -0.320 1.111 0.095 1.160 sum 12.960 -25.462 -5.898 29.173 Atomic orbital electron populations 1.20646 0.82504 0.93049 0.99303 1.44183 1.02200 1.01572 1.86466 1.19709 0.91878 0.84050 1.41333 0.89434 1.25717 0.96800 1.01240 1.02353 1.70424 1.08153 1.24819 1.56839 0.85144 0.78021 0.79396 0.77212 1.21244 1.22687 1.19033 1.21034 0.95187 0.86766 0.94322 1.22177 0.95748 0.81745 0.98353 0.94086 1.22469 0.96079 0.96499 0.99473 1.22841 1.01194 0.93952 0.98180 1.22604 0.82294 0.99704 0.97651 1.48805 1.16421 1.06414 1.62704 1.20791 0.85538 0.85265 0.77104 1.90698 1.22722 1.87249 1.44831 1.21623 0.96143 0.91434 1.03237 0.87104 1.21348 0.97807 0.93246 1.01442 1.21926 0.96069 0.96552 1.01701 1.22001 0.92189 0.87673 0.99938 1.47200 1.12441 1.08160 1.68276 1.16061 0.81477 0.84485 0.77691 1.42947 1.16707 1.05651 1.76551 1.90946 1.60958 1.39817 1.60278 1.21407 0.92347 0.85137 1.00045 0.97600 0.95993 0.97019 0.94759 0.94334 0.94182 0.91234 0.91533 0.87691 0.90040 0.90561 0.88725 0.92100 0.91816 0.90534 0.87751 0.86893 0.90371 0.75461 0.74628 0.88527 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.64 8.98 127.77 1.15 11.79 16 2 N -0.62 -33.38 2.92 -726.92 -2.12 -35.50 16 3 C -0.24 -13.31 8.83 84.03 0.74 -12.57 16 4 H 0.09 4.54 6.43 -2.91 -0.02 4.52 16 5 C -0.07 -3.95 5.41 84.86 0.46 -3.49 16 6 N -0.95 -58.53 9.56 21.65 0.21 -58.33 16 7 Si 0.97 46.03 29.56 68.60 2.03 48.05 16 8 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 9 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 C 0.15 7.06 5.19 86.38 0.45 7.50 16 12 C 0.13 4.83 3.14 45.34 0.14 4.97 16 13 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 14 C -0.11 -3.60 5.38 31.78 0.17 -3.42 16 15 C -0.12 -2.91 7.08 31.99 0.23 -2.69 16 16 C 0.10 2.34 5.10 86.86 0.44 2.79 16 17 N -0.61 -18.91 3.06 -788.07 -2.42 -21.32 16 18 C 0.52 16.36 7.05 87.66 0.62 16.98 16 19 O -0.58 -23.06 14.76 -3.02 -0.04 -23.10 16 20 C -0.10 -2.15 2.02 -11.46 -0.02 -2.18 16 21 H 0.11 2.06 7.95 -2.39 -0.02 2.04 16 22 C -0.10 -1.80 4.46 30.62 0.14 -1.67 16 23 C -0.12 -1.09 6.08 30.67 0.19 -0.90 16 24 C 0.10 0.81 6.43 86.36 0.56 1.36 16 25 N -0.62 -9.59 2.97 -836.89 -2.49 -12.08 16 26 C 0.70 12.68 8.57 179.05 1.53 14.21 16 27 N -0.85 -6.80 8.77 -184.74 -1.62 -8.42 16 28 O -0.64 -17.76 16.61 -3.99 -0.07 -17.82 16 29 C 0.14 2.76 5.36 86.36 0.46 3.23 16 30 H 0.01 0.29 7.79 -2.39 -0.02 0.27 16 31 H 0.02 1.32 6.85 -2.38 -0.02 1.31 16 32 H 0.01 0.67 7.27 -2.38 -0.02 0.66 16 33 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.04 1.88 6.27 -2.39 -0.01 1.86 16 35 H 0.04 1.80 7.93 -2.39 -0.02 1.78 16 36 H 0.07 2.48 6.40 -2.38 -0.02 2.47 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.78 7.40 -2.39 -0.02 1.76 16 41 H 0.09 1.85 7.00 -2.39 -0.02 1.84 16 42 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 43 H 0.06 1.32 8.07 -2.39 -0.02 1.30 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.11 0.08 5.58 -2.38 -0.01 0.07 16 47 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.41 0.51 6.32 -92.71 -0.59 -0.08 16 49 H 0.42 2.64 8.93 -92.71 -0.83 1.81 16 50 H 0.10 2.21 3.88 -2.39 -0.01 2.20 16 51 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -80.40 384.29 0.28 -80.12 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.45 Total: 12.49 kcal Atomic # 6 Polarization: 28.66 SS G_CDS: 7.25 Total: 35.91 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -8.44 Total: -135.64 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.11 Total: -40.92 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -80.40 0.28 -80.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.672 kcal (2) G-P(sol) polarization free energy of solvation -80.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds