Wall clock time and date at job start Tue Mar 31 2020 20:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36933 * 119.99871 * 2 1 4 4 H 1.08002 * 119.99672 * 183.58122 * 3 2 1 5 5 C 1.38807 * 120.00295 * 3.58384 * 3 2 1 6 6 N 1.31615 * 120.00153 * 5.42302 * 5 3 2 7 7 Si 1.86799 * 119.99966 * 185.42523 * 5 3 2 8 8 H 1.48503 * 109.47408 * 60.00069 * 7 5 3 9 9 H 1.48500 * 109.47207 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47029 * 299.99543 * 7 5 3 11 11 C 1.46496 * 119.99592 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47227 * 275.42053 * 11 2 1 13 13 H 1.08997 * 109.99630 * 56.79021 * 12 11 2 14 14 C 1.54323 * 109.88086 * 295.69555 * 12 11 2 15 15 C 1.55158 * 103.10205 * 218.29465 * 14 12 11 16 16 C 1.55393 * 101.36199 * 35.50032 * 15 14 12 17 17 N 1.47024 * 109.88384 * 177.88655 * 12 11 2 18 18 C 1.34774 * 125.64573 * 298.32073 * 17 12 11 19 19 O 1.21281 * 120.00527 * 3.76007 * 18 17 12 20 20 C 1.50706 * 119.99660 * 183.75342 * 18 17 12 21 21 H 1.08996 * 109.49916 * 315.12018 * 20 18 17 22 22 C 1.53038 * 109.49735 * 195.01554 * 20 18 17 23 23 C 1.53037 * 109.53645 * 178.68670 * 22 20 18 24 24 C 1.53183 * 109.31514 * 61.36952 * 23 22 20 25 25 N 1.46933 * 108.77536 * 305.36402 * 24 23 22 26 26 C 1.34776 * 120.62975 * 233.58875 * 25 24 23 27 27 N 1.34770 * 120.00062 * 355.67423 * 26 25 24 28 28 O 1.21589 * 119.99617 * 175.67462 * 26 25 24 29 29 C 1.46928 * 118.73720 * 53.60431 * 25 24 23 30 30 H 1.09000 * 109.46998 * 180.82681 * 1 2 3 31 31 H 1.09000 * 109.46614 * 300.82512 * 1 2 3 32 32 H 1.08996 * 109.47124 * 60.82288 * 1 2 3 33 33 H 0.96998 * 120.00634 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.47339 * 155.42508 * 11 2 1 35 35 H 1.09002 * 109.47479 * 35.42319 * 11 2 1 36 36 H 1.08993 * 110.71984 * 336.75086 * 14 12 11 37 37 H 1.09004 * 110.72055 * 99.84599 * 14 12 11 38 38 H 1.08999 * 111.00161 * 153.65910 * 15 14 12 39 39 H 1.08998 * 111.00864 * 277.51939 * 15 14 12 40 40 H 1.09004 * 110.33988 * 204.16439 * 16 15 14 41 41 H 1.08993 * 110.35162 * 81.86858 * 16 15 14 42 42 H 1.08997 * 109.46492 * 298.71007 * 22 20 18 43 43 H 1.09001 * 109.46187 * 58.66631 * 22 20 18 44 44 H 1.09003 * 109.49631 * 301.41367 * 23 22 20 45 45 H 1.09002 * 109.52435 * 181.33743 * 23 22 20 46 46 H 1.09001 * 109.59489 * 185.57780 * 24 23 22 47 47 H 1.09000 * 109.59267 * 65.14917 * 24 23 22 48 48 H 0.96997 * 120.00443 * 5.02906 * 27 26 25 49 49 H 0.97001 * 120.00087 * 185.03080 * 27 26 25 50 50 H 1.09000 * 109.58378 * 186.60745 * 29 25 24 51 51 H 1.09002 * 109.70010 * 66.25549 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2282 1.1868 -0.0584 5 6 1.4578 2.3868 0.0751 6 7 0.1538 2.3850 0.2537 7 14 2.3773 4.0057 -0.0773 8 1 3.0583 4.0660 -1.3956 9 1 1.4172 5.1329 0.0364 10 1 3.3873 4.1052 1.0068 11 6 2.1975 -1.2687 -0.0006 12 6 2.3345 -1.7792 1.4353 13 1 1.3492 -1.8809 1.8903 14 6 3.1952 -0.7997 2.2606 15 6 4.0359 -1.7431 3.1610 16 6 4.2779 -2.9437 2.2047 17 7 3.0242 -3.0776 1.4407 18 6 2.5829 -4.2039 0.8464 19 8 1.5665 -4.1824 0.1850 20 6 3.3526 -5.4900 1.0035 21 1 4.4163 -5.2967 0.8648 22 6 2.8759 -6.5015 -0.0413 23 6 3.6796 -7.7966 0.0962 24 6 3.4458 -8.3926 1.4878 25 7 3.7647 -7.3745 2.4980 26 6 4.6363 -7.6415 3.4907 27 7 5.1579 -8.8779 3.6150 28 8 4.9518 -6.7669 4.2742 29 6 3.1151 -6.0598 2.4055 30 1 -0.3633 -1.0276 0.0148 31 1 -0.3632 0.5266 0.8825 32 1 -0.3633 0.5010 -0.8972 33 1 -0.3299 3.2242 0.3059 34 1 3.1886 -1.1160 -0.4279 35 1 1.6539 -2.0019 -0.5965 36 1 3.8413 -0.2112 1.6094 37 1 2.5649 -0.1488 2.8666 38 1 4.9763 -1.2729 3.4487 39 1 3.4699 -2.0512 4.0401 40 1 4.4721 -3.8509 2.7771 41 1 5.1103 -2.7321 1.5337 42 1 1.8179 -6.7125 0.1137 43 1 3.0211 -6.0883 -1.0395 44 1 4.7403 -7.5821 -0.0343 45 1 3.3563 -8.5083 -0.6634 46 1 4.0910 -9.2601 1.6270 47 1 2.4022 -8.6913 1.5869 48 1 4.9638 -9.5555 2.9487 49 1 5.7276 -9.0902 4.3709 50 1 3.5421 -5.3881 3.1502 51 1 2.0444 -6.1659 2.5804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717368763.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:12 Heat of formation + Delta-G solvation = -26.367555 kcal Electronic energy + Delta-G solvation = -31256.484395 eV Core-core repulsion = 27191.982983 eV Total energy + Delta-G solvation = -4064.501412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.89800 -39.81691 -37.88230 -36.81911 -35.25651 -34.31441 -32.65192 -32.11608 -31.30865 -30.72271 -28.79514 -25.87115 -25.73184 -25.22499 -24.53190 -22.71258 -21.72441 -21.14766 -20.23900 -19.63765 -18.89011 -18.38475 -17.28410 -16.92304 -16.73783 -16.04524 -15.78786 -15.17917 -14.97451 -14.86885 -14.61132 -14.50982 -13.85143 -13.68840 -13.58977 -13.34866 -13.27598 -12.95201 -12.87977 -12.67800 -12.52512 -11.99967 -11.80333 -11.68314 -11.34155 -11.21989 -10.98923 -10.89117 -10.88502 -10.72745 -10.70831 -10.50018 -10.36617 -10.19709 -10.09128 -10.03895 -9.77368 -9.68385 -9.38396 -8.94268 -8.56420 -8.27768 -6.79868 -5.52743 -2.98478 2.34573 2.81646 2.93395 3.23771 3.42857 3.48281 3.49077 3.72084 4.31616 4.45311 4.55432 4.56589 4.67270 4.72205 4.86921 4.94334 5.07140 5.15945 5.24407 5.33505 5.39583 5.47072 5.51453 5.53285 5.58120 5.69911 5.74767 5.79664 5.91142 5.92114 6.03585 6.07355 6.09886 6.18291 6.39848 6.41629 6.49235 6.56287 6.64802 6.75996 6.91042 6.96979 7.07476 7.48831 7.70758 7.81062 7.86858 8.05012 8.27743 8.42581 8.49048 9.35789 9.99359 10.43595 11.43794 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.002734 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.172858 B =10239.118142 C =11016.034304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.606 5.606 3 C -0.238 4.238 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.918 5.918 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.150 3.850 12 C 0.114 3.886 13 H 0.067 0.933 14 C -0.106 4.106 15 C -0.137 4.137 16 C 0.095 3.905 17 N -0.608 5.608 18 C 0.530 3.470 19 O -0.533 6.533 20 C -0.118 4.118 21 H 0.094 0.906 22 C -0.101 4.101 23 C -0.135 4.135 24 C 0.109 3.891 25 N -0.626 5.626 26 C 0.709 3.291 27 N -0.869 5.869 28 O -0.590 6.590 29 C 0.139 3.861 30 H -0.007 1.007 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.249 0.751 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.395 0.605 49 H 0.413 0.587 50 H 0.102 0.898 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.114 -25.213 4.580 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.329 5.329 3 C -0.368 4.368 4 H 0.090 0.910 5 C -0.203 4.203 6 N -0.566 5.566 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.212 1.212 11 C 0.021 3.979 12 C 0.009 3.991 13 H 0.085 0.915 14 C -0.144 4.144 15 C -0.175 4.175 16 C -0.028 4.028 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.409 6.409 20 C -0.140 4.140 21 H 0.112 0.888 22 C -0.139 4.139 23 C -0.173 4.173 24 C -0.014 4.014 25 N -0.364 5.364 26 C 0.409 3.591 27 N -0.439 5.439 28 O -0.468 6.468 29 C 0.016 3.984 30 H 0.012 0.988 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.226 0.774 49 H 0.245 0.755 50 H 0.120 0.880 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.495 -24.401 4.621 26.588 hybrid contribution 0.718 0.494 -0.096 0.877 sum 10.214 -23.907 4.525 26.388 Atomic orbital electron populations 1.21092 0.81569 0.93268 1.01879 1.44011 1.02465 1.00303 1.86101 1.19249 0.90777 0.83624 1.43106 0.91037 1.24838 0.95792 0.97691 1.02021 1.70191 1.05794 1.24490 1.56171 0.86294 0.78456 0.83678 0.77873 1.21358 1.21721 1.21196 1.21043 0.96176 0.88338 0.92367 1.22724 0.95270 0.80206 1.00874 0.91470 1.22512 0.98109 0.96392 0.97433 1.22904 1.00962 0.95835 0.97777 1.22485 0.86942 0.99375 0.93984 1.48776 1.22854 1.10342 1.52286 1.19891 0.85309 0.83673 0.79416 1.90716 1.25350 1.85250 1.39600 1.21678 1.01455 0.93693 0.97218 0.88771 1.21342 1.00566 0.93335 0.98641 1.21951 1.01226 0.97925 0.96189 1.21714 1.01400 0.90215 0.88058 1.47227 1.45870 1.15003 1.28295 1.15838 0.78807 0.83109 0.81339 1.43158 1.56771 1.12292 1.31701 1.90980 1.64614 1.45571 1.45633 1.21401 0.97767 0.83305 0.95949 0.98826 0.92202 0.95623 0.94031 0.93878 0.93146 0.90177 0.90117 0.90303 0.91096 0.90757 0.91586 0.90424 0.90725 0.91345 0.90067 0.90462 0.90830 0.77420 0.75452 0.88013 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.41 9.01 59.85 0.54 4.95 16 2 N -0.61 -15.71 2.79 -181.11 -0.51 -16.21 16 3 C -0.24 -6.51 8.73 -15.06 -0.13 -6.64 16 4 H 0.07 1.88 7.41 -52.49 -0.39 1.49 16 5 C -0.01 -0.21 5.43 -17.43 -0.09 -0.31 16 6 N -0.92 -27.05 9.50 55.49 0.53 -26.52 16 7 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 C 0.15 3.31 5.04 -4.04 -0.02 3.29 16 12 C 0.11 2.17 3.16 -66.95 -0.21 1.96 16 13 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 14 C -0.11 -1.86 5.69 -24.90 -0.14 -2.00 16 15 C -0.14 -1.83 7.12 -24.32 -0.17 -2.00 16 16 C 0.10 1.23 6.49 -2.27 -0.01 1.22 16 17 N -0.61 -9.61 3.07 -162.71 -0.50 -10.11 16 18 C 0.53 8.27 6.87 -10.98 -0.08 8.20 16 19 O -0.53 -10.28 14.89 5.56 0.08 -10.20 16 20 C -0.12 -1.33 1.94 -91.65 -0.18 -1.51 16 21 H 0.09 1.01 7.80 -51.93 -0.40 0.61 16 22 C -0.10 -0.97 4.55 -26.69 -0.12 -1.09 16 23 C -0.13 -0.83 6.08 -26.62 -0.16 -0.99 16 24 C 0.11 0.61 6.40 -3.71 -0.02 0.59 16 25 N -0.63 -5.57 2.97 -178.50 -0.53 -6.10 16 26 C 0.71 7.27 8.57 -86.92 -0.75 6.53 16 27 N -0.87 -4.94 8.78 27.63 0.24 -4.70 16 28 O -0.59 -8.69 16.59 5.29 0.09 -8.60 16 29 C 0.14 1.52 5.58 -3.71 -0.02 1.49 16 30 H -0.01 -0.17 7.87 -51.93 -0.41 -0.58 16 31 H 0.06 1.70 6.56 -51.93 -0.34 1.36 16 32 H 0.03 0.72 7.49 -51.93 -0.39 0.34 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.04 0.94 7.91 -51.93 -0.41 0.53 16 35 H 0.05 1.18 6.57 -51.93 -0.34 0.84 16 36 H 0.08 1.50 6.95 -51.93 -0.36 1.14 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.88 5.67 -51.93 -0.29 0.58 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.82 7.98 -51.93 -0.41 0.40 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.22 5.63 -51.93 -0.29 -0.08 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.40 1.10 6.31 -40.82 -0.26 0.84 16 49 H 0.41 1.92 8.93 -40.82 -0.36 1.56 16 50 H 0.10 1.27 5.05 -51.93 -0.26 1.00 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -34.90 388.01 -9.64 -44.54 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.29 Total: 1.27 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -1.57 Total: 13.68 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.77 Total: -63.64 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.17 Total: -18.80 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.90 -9.64 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368763.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.174 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds