Wall clock time and date at job start Tue Mar 31 2020 20:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36933 * 119.99871 * 2 1 4 4 H 1.08002 * 119.99672 * 183.58122 * 3 2 1 5 5 C 1.38807 * 120.00295 * 3.58384 * 3 2 1 6 6 N 1.31615 * 120.00153 * 5.42302 * 5 3 2 7 7 Si 1.86799 * 119.99966 * 185.42523 * 5 3 2 8 8 H 1.48503 * 109.47408 * 60.00069 * 7 5 3 9 9 H 1.48500 * 109.47207 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47029 * 299.99543 * 7 5 3 11 11 C 1.46496 * 119.99592 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47227 * 275.42053 * 11 2 1 13 13 H 1.08997 * 109.99630 * 56.79021 * 12 11 2 14 14 C 1.54323 * 109.88086 * 295.69555 * 12 11 2 15 15 C 1.55158 * 103.10205 * 218.29465 * 14 12 11 16 16 C 1.55393 * 101.36199 * 35.50032 * 15 14 12 17 17 N 1.47024 * 109.88384 * 177.88655 * 12 11 2 18 18 C 1.34774 * 125.64573 * 298.32073 * 17 12 11 19 19 O 1.21281 * 120.00527 * 3.76007 * 18 17 12 20 20 C 1.50706 * 119.99660 * 183.75342 * 18 17 12 21 21 H 1.08996 * 109.49916 * 315.12018 * 20 18 17 22 22 C 1.53038 * 109.49735 * 195.01554 * 20 18 17 23 23 C 1.53037 * 109.53645 * 178.68670 * 22 20 18 24 24 C 1.53183 * 109.31514 * 61.36952 * 23 22 20 25 25 N 1.46933 * 108.77536 * 305.36402 * 24 23 22 26 26 C 1.34776 * 120.62975 * 233.58875 * 25 24 23 27 27 N 1.34770 * 120.00062 * 355.67423 * 26 25 24 28 28 O 1.21589 * 119.99617 * 175.67462 * 26 25 24 29 29 C 1.46928 * 118.73720 * 53.60431 * 25 24 23 30 30 H 1.09000 * 109.46998 * 180.82681 * 1 2 3 31 31 H 1.09000 * 109.46614 * 300.82512 * 1 2 3 32 32 H 1.08996 * 109.47124 * 60.82288 * 1 2 3 33 33 H 0.96998 * 120.00634 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.47339 * 155.42508 * 11 2 1 35 35 H 1.09002 * 109.47479 * 35.42319 * 11 2 1 36 36 H 1.08993 * 110.71984 * 336.75086 * 14 12 11 37 37 H 1.09004 * 110.72055 * 99.84599 * 14 12 11 38 38 H 1.08999 * 111.00161 * 153.65910 * 15 14 12 39 39 H 1.08998 * 111.00864 * 277.51939 * 15 14 12 40 40 H 1.09004 * 110.33988 * 204.16439 * 16 15 14 41 41 H 1.08993 * 110.35162 * 81.86858 * 16 15 14 42 42 H 1.08997 * 109.46492 * 298.71007 * 22 20 18 43 43 H 1.09001 * 109.46187 * 58.66631 * 22 20 18 44 44 H 1.09003 * 109.49631 * 301.41367 * 23 22 20 45 45 H 1.09002 * 109.52435 * 181.33743 * 23 22 20 46 46 H 1.09001 * 109.59489 * 185.57780 * 24 23 22 47 47 H 1.09000 * 109.59267 * 65.14917 * 24 23 22 48 48 H 0.96997 * 120.00443 * 5.02906 * 27 26 25 49 49 H 0.97001 * 120.00087 * 185.03080 * 27 26 25 50 50 H 1.09000 * 109.58378 * 186.60745 * 29 25 24 51 51 H 1.09002 * 109.70010 * 66.25549 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2282 1.1868 -0.0584 5 6 1.4578 2.3868 0.0751 6 7 0.1538 2.3850 0.2537 7 14 2.3773 4.0057 -0.0773 8 1 3.0583 4.0660 -1.3956 9 1 1.4172 5.1329 0.0364 10 1 3.3873 4.1052 1.0068 11 6 2.1975 -1.2687 -0.0006 12 6 2.3345 -1.7792 1.4353 13 1 1.3492 -1.8809 1.8903 14 6 3.1952 -0.7997 2.2606 15 6 4.0359 -1.7431 3.1610 16 6 4.2779 -2.9437 2.2047 17 7 3.0242 -3.0776 1.4407 18 6 2.5829 -4.2039 0.8464 19 8 1.5665 -4.1824 0.1850 20 6 3.3526 -5.4900 1.0035 21 1 4.4163 -5.2967 0.8648 22 6 2.8759 -6.5015 -0.0413 23 6 3.6796 -7.7966 0.0962 24 6 3.4458 -8.3926 1.4878 25 7 3.7647 -7.3745 2.4980 26 6 4.6363 -7.6415 3.4907 27 7 5.1579 -8.8779 3.6150 28 8 4.9518 -6.7669 4.2742 29 6 3.1151 -6.0598 2.4055 30 1 -0.3633 -1.0276 0.0148 31 1 -0.3632 0.5266 0.8825 32 1 -0.3633 0.5010 -0.8972 33 1 -0.3299 3.2242 0.3059 34 1 3.1886 -1.1160 -0.4279 35 1 1.6539 -2.0019 -0.5965 36 1 3.8413 -0.2112 1.6094 37 1 2.5649 -0.1488 2.8666 38 1 4.9763 -1.2729 3.4487 39 1 3.4699 -2.0512 4.0401 40 1 4.4721 -3.8509 2.7771 41 1 5.1103 -2.7321 1.5337 42 1 1.8179 -6.7125 0.1137 43 1 3.0211 -6.0883 -1.0395 44 1 4.7403 -7.5821 -0.0343 45 1 3.3563 -8.5083 -0.6634 46 1 4.0910 -9.2601 1.6270 47 1 2.4022 -8.6913 1.5869 48 1 4.9638 -9.5555 2.9487 49 1 5.7276 -9.0902 4.3709 50 1 3.5421 -5.3881 3.1502 51 1 2.0444 -6.1659 2.5804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717368763.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:10 Heat of formation + Delta-G solvation = -51.007080 kcal Electronic energy + Delta-G solvation = -31257.552845 eV Core-core repulsion = 27191.982983 eV Total energy + Delta-G solvation = -4065.569862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.82768 -40.91560 -39.05853 -37.90261 -37.17292 -35.07528 -33.61016 -33.31951 -32.87320 -31.77292 -30.42524 -28.04407 -26.79529 -26.44863 -25.66966 -23.84316 -22.90187 -22.60737 -21.48435 -20.52666 -19.90504 -19.28919 -18.90488 -18.13359 -17.83019 -17.45020 -16.78337 -16.56215 -15.93958 -15.90464 -15.81726 -15.47094 -15.33703 -15.14082 -14.83509 -14.55170 -14.45500 -14.15375 -14.07572 -13.94933 -13.72532 -13.64621 -13.31177 -12.86518 -12.70395 -12.63657 -12.52744 -12.30246 -12.11807 -12.08523 -12.01408 -11.88985 -11.85119 -11.66578 -11.55994 -11.49065 -11.31193 -10.75839 -10.68055 -10.65993 -9.76874 -9.64657 -8.89535 -7.68958 -5.17480 1.45250 1.47790 1.50797 1.56949 1.78180 2.01634 2.14917 2.53849 3.21215 3.36323 3.42225 3.62776 3.66966 3.77829 3.82949 3.86936 4.02437 4.05639 4.11139 4.19900 4.29540 4.42186 4.46434 4.51242 4.53285 4.63011 4.72936 4.77381 4.80522 4.86952 4.90637 4.95980 5.03811 5.08606 5.09072 5.13559 5.17250 5.36614 5.39894 5.41649 5.46374 5.48567 5.63590 5.81475 5.83634 6.03968 6.30736 6.59299 6.91637 7.14522 7.18040 7.61979 7.87934 8.30619 9.27659 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.002734 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.172858 B =10239.118142 C =11016.034304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.619 5.619 3 C -0.241 4.241 4 H 0.083 0.917 5 C -0.066 4.066 6 N -0.950 5.950 7 Si 0.974 3.026 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.272 1.272 11 C 0.157 3.843 12 C 0.124 3.876 13 H 0.038 0.962 14 C -0.102 4.102 15 C -0.123 4.123 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.525 3.475 19 O -0.576 6.576 20 C -0.103 4.103 21 H 0.107 0.893 22 C -0.101 4.101 23 C -0.125 4.125 24 C 0.104 3.896 25 N -0.623 5.623 26 C 0.703 3.297 27 N -0.846 5.846 28 O -0.640 6.640 29 C 0.145 3.855 30 H 0.004 0.996 31 H 0.038 0.962 32 H 0.000 1.000 33 H 0.243 0.757 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.113 0.887 47 H 0.081 0.919 48 H 0.412 0.588 49 H 0.421 0.579 50 H 0.087 0.913 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.048 -27.658 4.960 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.343 5.343 3 C -0.370 4.370 4 H 0.100 0.900 5 C -0.258 4.258 6 N -0.600 5.600 7 Si 0.802 3.198 8 H -0.208 1.208 9 H -0.225 1.225 10 H -0.197 1.197 11 C 0.029 3.971 12 C 0.018 3.982 13 H 0.056 0.944 14 C -0.140 4.140 15 C -0.161 4.161 16 C -0.024 4.024 17 N -0.343 5.343 18 C 0.314 3.686 19 O -0.455 6.455 20 C -0.125 4.125 21 H 0.125 0.875 22 C -0.139 4.139 23 C -0.163 4.163 24 C -0.017 4.017 25 N -0.360 5.360 26 C 0.403 3.597 27 N -0.418 5.418 28 O -0.522 6.522 29 C 0.021 3.979 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.018 0.982 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.131 0.869 47 H 0.099 0.901 48 H 0.246 0.754 49 H 0.254 0.746 50 H 0.105 0.895 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.488 -26.949 4.993 30.118 hybrid contribution -0.224 1.146 -0.258 1.196 sum 12.264 -25.803 4.736 28.959 Atomic orbital electron populations 1.20720 0.82440 0.93084 0.99560 1.44181 1.02255 1.01470 1.86416 1.19586 0.91333 0.84077 1.42011 0.89964 1.25664 0.96648 1.01056 1.02436 1.70398 1.07285 1.24745 1.57574 0.85226 0.77226 0.79136 0.78183 1.20766 1.22478 1.19743 1.21020 0.95403 0.86478 0.94177 1.22206 0.94993 0.82523 0.98449 0.94365 1.22353 0.97853 0.96298 0.97544 1.22893 1.01380 0.94748 0.97104 1.22660 0.85731 1.00026 0.93995 1.48815 1.23643 1.09186 1.52661 1.20773 0.84969 0.84754 0.78141 1.90694 1.27395 1.85997 1.41432 1.21619 1.01166 0.91499 0.98204 0.87539 1.21362 1.00547 0.94743 0.97263 1.21917 1.00796 0.96275 0.97289 1.22006 1.02867 0.90258 0.86612 1.47195 1.45298 1.14713 1.28822 1.16058 0.78895 0.83765 0.80988 1.42939 1.55672 1.11026 1.32156 1.90946 1.66342 1.47406 1.47468 1.21154 0.97419 0.84458 0.94909 0.97740 0.94345 0.98163 0.94718 0.93440 0.94870 0.91185 0.92297 0.87578 0.90620 0.88969 0.89946 0.91716 0.91970 0.90794 0.87656 0.86909 0.90056 0.75435 0.74611 0.89470 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.41 9.01 127.77 1.15 11.57 16 2 N -0.62 -33.16 2.79 -726.92 -2.03 -35.19 16 3 C -0.24 -13.31 8.73 84.03 0.73 -12.58 16 4 H 0.08 4.30 7.41 -2.91 -0.02 4.27 16 5 C -0.07 -3.74 5.43 84.86 0.46 -3.28 16 6 N -0.95 -57.77 9.50 21.65 0.21 -57.56 16 7 Si 0.97 45.85 29.56 68.60 2.03 47.87 16 8 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 9 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 C 0.16 7.13 5.04 86.38 0.44 7.57 16 12 C 0.12 4.86 3.16 45.34 0.14 5.00 16 13 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 14 C -0.10 -3.58 5.69 31.78 0.18 -3.40 16 15 C -0.12 -3.08 7.12 32.16 0.23 -2.85 16 16 C 0.10 2.34 6.49 87.03 0.57 2.90 16 17 N -0.61 -19.19 3.07 -787.08 -2.41 -21.60 16 18 C 0.52 16.49 6.87 87.66 0.60 17.09 16 19 O -0.58 -23.04 14.89 -3.03 -0.05 -23.09 16 20 C -0.10 -2.20 1.94 -11.46 -0.02 -2.22 16 21 H 0.11 2.05 7.80 -2.39 -0.02 2.03 16 22 C -0.10 -1.82 4.55 30.62 0.14 -1.68 16 23 C -0.12 -1.12 6.08 30.67 0.19 -0.93 16 24 C 0.10 0.78 6.40 86.36 0.55 1.33 16 25 N -0.62 -9.55 2.97 -836.91 -2.49 -12.04 16 26 C 0.70 12.73 8.57 179.06 1.54 14.27 16 27 N -0.85 -6.81 8.78 -184.75 -1.62 -8.43 16 28 O -0.64 -17.96 16.59 -4.00 -0.07 -18.03 16 29 C 0.15 3.00 5.58 86.36 0.48 3.48 16 30 H 0.00 0.21 7.87 -2.39 -0.02 0.19 16 31 H 0.04 2.29 6.56 -2.39 -0.02 2.28 16 32 H 0.00 -0.01 7.49 -2.39 -0.02 -0.03 16 33 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.05 2.09 7.91 -2.38 -0.02 2.07 16 35 H 0.03 1.61 6.57 -2.39 -0.02 1.60 16 36 H 0.07 2.59 6.95 -2.39 -0.02 2.57 16 37 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.09 1.97 5.67 -2.39 -0.01 1.95 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.34 7.98 -2.39 -0.02 1.32 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.11 0.06 5.63 -2.39 -0.01 0.04 16 47 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.41 0.48 6.31 -92.71 -0.58 -0.11 16 49 H 0.42 2.65 8.93 -92.71 -0.83 1.82 16 50 H 0.09 2.09 5.05 -2.39 -0.01 2.08 16 51 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -79.68 388.01 0.48 -79.20 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.46 Total: 12.61 kcal Atomic # 6 Polarization: 28.89 SS G_CDS: 7.37 Total: 36.26 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -8.35 Total: -134.83 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.11 Total: -41.12 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -79.68 0.48 -79.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368763.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.193 kcal (2) G-P(sol) polarization free energy of solvation -79.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds