Wall clock time and date at job start Tue Mar 31 2020 20:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 120.00079 * 2 1 4 4 H 1.07998 * 120.00365 * 181.42547 * 3 2 1 5 5 C 1.38818 * 119.99718 * 1.42921 * 3 2 1 6 6 N 1.31617 * 120.00107 * 7.49010 * 5 3 2 7 7 Si 1.86796 * 119.99772 * 187.49821 * 5 3 2 8 8 H 1.48500 * 109.47306 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47248 * 119.99822 * 7 5 3 10 10 H 1.48501 * 109.46866 * 239.99603 * 7 5 3 11 11 C 1.46503 * 120.00120 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46803 * 89.89850 * 11 2 1 13 13 H 1.08997 * 110.00031 * 305.89096 * 12 11 2 14 14 C 1.54322 * 109.77673 * 67.04462 * 12 11 2 15 15 C 1.55149 * 102.86395 * 141.88276 * 14 12 11 16 16 C 1.54911 * 101.58622 * 324.30408 * 15 14 12 17 17 N 1.47023 * 109.88509 * 184.79221 * 12 11 2 18 18 C 1.34781 * 125.64470 * 61.67600 * 17 12 11 19 19 O 1.21284 * 120.00082 * 355.93484 * 18 17 12 20 20 C 1.50704 * 119.99838 * 175.93537 * 18 17 12 21 21 H 1.09000 * 109.49654 * 54.15337 * 20 18 17 22 22 C 1.53041 * 109.52204 * 174.23198 * 20 18 17 23 23 C 1.53040 * 109.53302 * 181.33379 * 22 20 18 24 24 C 1.53626 * 109.24286 * 298.50738 * 23 22 20 25 25 N 1.46924 * 108.54175 * 54.85987 * 24 23 22 26 26 C 1.34774 * 120.62956 * 126.36997 * 25 24 23 27 27 N 1.34775 * 120.00282 * 5.05120 * 26 25 24 28 28 O 1.21590 * 120.00128 * 185.05831 * 26 25 24 29 29 C 1.46926 * 118.73574 * 306.09529 * 25 24 23 30 30 H 1.09006 * 109.46566 * 174.49424 * 1 2 3 31 31 H 1.08997 * 109.46831 * 294.49237 * 1 2 3 32 32 H 1.09000 * 109.46943 * 54.49813 * 1 2 3 33 33 H 0.97000 * 119.99831 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.46932 * 329.90351 * 11 2 1 35 35 H 1.08995 * 109.47204 * 209.89339 * 11 2 1 36 36 H 1.09001 * 110.91920 * 23.46568 * 14 12 11 37 37 H 1.08998 * 110.74138 * 260.21893 * 14 12 11 38 38 H 1.08996 * 111.00555 * 206.22920 * 15 14 12 39 39 H 1.09007 * 111.00482 * 82.37943 * 15 14 12 40 40 H 1.08997 * 110.36671 * 278.17543 * 16 15 14 41 41 H 1.08997 * 110.36654 * 155.84682 * 16 15 14 42 42 H 1.08998 * 109.45686 * 301.34965 * 22 20 18 43 43 H 1.08994 * 109.46313 * 61.30821 * 22 20 18 44 44 H 1.08997 * 109.49937 * 58.59060 * 23 22 20 45 45 H 1.09001 * 109.49402 * 178.64828 * 23 22 20 46 46 H 1.09002 * 109.73709 * 295.12218 * 24 23 22 47 47 H 1.08998 * 109.66123 * 174.55265 * 24 23 22 48 48 H 0.96994 * 120.00521 * 175.15664 * 27 26 25 49 49 H 0.97004 * 119.99632 * 354.89272 * 27 26 25 50 50 H 1.09007 * 109.58585 * 173.64792 * 29 25 24 51 51 H 1.08999 * 109.58683 * 293.92405 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2295 1.1861 -0.0233 5 6 1.4559 2.3879 0.0300 6 7 0.1517 2.3907 0.2068 7 14 2.3734 4.0013 -0.1809 8 1 3.8215 3.7273 -0.3623 9 1 1.8511 4.7155 -1.3734 10 1 2.1769 4.8438 1.0261 11 6 2.1976 -1.2687 0.0006 12 6 2.4503 -1.7123 -1.4417 13 1 1.5099 -1.7452 -1.9919 14 6 3.4273 -0.7328 -2.1256 15 6 4.3051 -1.6712 -2.9951 16 6 4.4065 -2.9265 -2.0930 17 7 3.0831 -3.0393 -1.4533 18 6 2.5407 -4.1724 -0.9649 19 8 1.4700 -4.1361 -0.3964 20 6 3.2647 -5.4843 -1.1252 21 1 4.2754 -5.3931 -0.7273 22 6 2.5133 -6.5794 -0.3648 23 6 3.2662 -7.9049 -0.4999 24 6 3.3293 -8.3026 -1.9825 25 7 3.9231 -7.1920 -2.7392 26 6 4.9870 -7.3984 -3.5404 27 7 5.4532 -8.6482 -3.7331 28 8 5.5263 -6.4570 -4.0894 29 6 3.3313 -5.8534 -2.6105 30 1 -0.3633 -1.0230 -0.0986 31 1 -0.3633 0.4260 0.9352 32 1 -0.3633 0.5968 -0.8366 33 1 -0.3331 3.2306 0.2274 34 1 1.6092 -2.0277 0.5162 35 1 3.1508 -1.1377 0.5127 36 1 4.0355 -0.2105 -1.3870 37 1 2.8869 -0.0217 -2.7504 38 1 5.2887 -1.2352 -3.1698 39 1 3.8107 -1.9064 -3.9377 40 1 5.1819 -2.7903 -1.3392 41 1 4.6132 -3.8110 -2.6956 42 1 2.4431 -6.3074 0.6883 43 1 1.5110 -6.6871 -0.7794 44 1 4.2768 -7.7909 -0.1078 45 1 2.7433 -8.6791 0.0618 46 1 2.3238 -8.5012 -2.3534 47 1 3.9460 -9.1939 -2.0971 48 1 6.1733 -8.8054 -4.3635 49 1 5.0711 -9.3899 -3.2384 50 1 3.9494 -5.1281 -3.1399 51 1 2.3269 -5.8556 -3.0341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717368764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:15 Heat of formation + Delta-G solvation = -22.825285 kcal Electronic energy + Delta-G solvation = -31306.374837 eV Core-core repulsion = 27242.027030 eV Total energy + Delta-G solvation = -4064.347808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92273 -39.82922 -37.88086 -36.83900 -35.26982 -34.32565 -32.64251 -32.16298 -31.31259 -30.71011 -28.81050 -25.86008 -25.71452 -25.29467 -24.51639 -22.70095 -21.74259 -21.13090 -20.24423 -19.70415 -18.94067 -18.37783 -17.29916 -16.88886 -16.75340 -16.06814 -15.80596 -15.17647 -15.00549 -14.86851 -14.61058 -14.55700 -13.80115 -13.73628 -13.61199 -13.31325 -13.26155 -13.03402 -12.85254 -12.66531 -12.50730 -11.98596 -11.81156 -11.68410 -11.33561 -11.24677 -11.10563 -10.95961 -10.84203 -10.70675 -10.61884 -10.50450 -10.37304 -10.23174 -10.04438 -10.02980 -9.79068 -9.64235 -9.38539 -8.94683 -8.54159 -8.27439 -6.79243 -5.55599 -2.97419 2.34771 2.81296 2.92510 3.22685 3.42567 3.48327 3.50615 3.71590 4.30966 4.43147 4.55262 4.56744 4.66596 4.71362 4.85076 4.93511 5.05359 5.10192 5.22895 5.32291 5.39263 5.46652 5.50052 5.51941 5.58535 5.70901 5.75550 5.80938 5.89812 5.93696 6.05371 6.06360 6.09995 6.17282 6.39077 6.40835 6.47238 6.55706 6.64711 6.72630 6.88786 6.97592 7.06786 7.48079 7.75892 7.79478 7.86129 8.04167 8.26959 8.41808 8.47435 9.35590 9.99684 10.44158 11.44018 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.002791 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.441027 B =10029.169562 C =11001.384629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.607 5.607 3 C -0.238 4.238 4 H 0.074 0.926 5 C -0.009 4.009 6 N -0.917 5.917 7 Si 0.904 3.096 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.149 3.851 12 C 0.115 3.885 13 H 0.068 0.932 14 C -0.108 4.108 15 C -0.137 4.137 16 C 0.091 3.909 17 N -0.609 5.609 18 C 0.530 3.470 19 O -0.532 6.532 20 C -0.118 4.118 21 H 0.096 0.904 22 C -0.100 4.100 23 C -0.134 4.134 24 C 0.109 3.891 25 N -0.626 5.626 26 C 0.709 3.291 27 N -0.869 5.869 28 O -0.590 6.590 29 C 0.133 3.867 30 H -0.006 1.006 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.248 0.752 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.414 0.586 49 H 0.395 0.605 50 H 0.107 0.893 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.751 -25.397 -6.461 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.330 5.330 3 C -0.367 4.367 4 H 0.092 0.908 5 C -0.204 4.204 6 N -0.566 5.566 7 Si 0.735 3.265 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.220 1.220 11 C 0.020 3.980 12 C 0.010 3.990 13 H 0.086 0.914 14 C -0.146 4.146 15 C -0.175 4.175 16 C -0.032 4.032 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.408 6.408 20 C -0.140 4.140 21 H 0.114 0.886 22 C -0.138 4.138 23 C -0.173 4.173 24 C -0.014 4.014 25 N -0.364 5.364 26 C 0.409 3.591 27 N -0.439 5.439 28 O -0.468 6.468 29 C 0.010 3.990 30 H 0.012 0.988 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.246 0.754 49 H 0.226 0.774 50 H 0.125 0.875 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.247 -24.546 -6.391 26.998 hybrid contribution 0.637 0.486 -0.134 0.812 sum 9.884 -24.061 -6.525 26.818 Atomic orbital electron populations 1.21010 0.81558 0.93239 1.01583 1.44009 1.02446 1.00366 1.86171 1.19349 0.90679 0.83532 1.43173 0.90784 1.24842 0.95775 0.97701 1.02118 1.70250 1.05864 1.24313 1.56125 0.86161 0.78724 0.84259 0.77338 1.20541 1.21804 1.21971 1.21021 0.96137 0.88612 0.92218 1.22696 0.95617 0.79430 1.01253 0.91377 1.22561 0.96909 0.96528 0.98595 1.22826 1.00999 0.95445 0.98249 1.22536 0.85277 0.99413 0.95981 1.48766 1.18538 1.08535 1.58474 1.19899 0.85611 0.83964 0.78833 1.90721 1.22027 1.86139 1.41942 1.21676 1.01315 0.93570 0.97479 0.88553 1.21330 0.98984 0.92182 1.01302 1.22028 1.01640 0.98240 0.95366 1.21808 0.99006 0.88594 0.92025 1.47232 1.31785 1.10055 1.47359 1.15841 0.79984 0.83682 0.79589 1.43160 1.43407 1.07737 1.49610 1.90978 1.60450 1.41171 1.54210 1.21579 0.99374 0.83421 0.94625 0.98784 0.94228 0.93987 0.94127 0.92878 0.94112 0.90246 0.90044 0.90305 0.91092 0.91551 0.90279 0.90534 0.90628 0.91307 0.90104 0.90833 0.90453 0.75449 0.77423 0.87548 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.55 8.98 59.85 0.54 5.08 16 2 N -0.61 -15.78 2.87 -181.12 -0.52 -16.30 16 3 C -0.24 -6.51 8.79 -15.06 -0.13 -6.64 16 4 H 0.07 1.95 6.92 -52.49 -0.36 1.58 16 5 C -0.01 -0.24 5.41 -17.43 -0.09 -0.34 16 6 N -0.92 -27.24 9.51 55.49 0.53 -26.71 16 7 Si 0.90 22.13 29.56 -169.99 -5.02 17.10 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 C 0.15 3.30 5.12 -4.04 -0.02 3.28 16 12 C 0.12 2.17 3.14 -66.95 -0.21 1.96 16 13 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 14 C -0.11 -1.85 5.55 -24.90 -0.14 -1.99 16 15 C -0.14 -1.81 7.08 -24.59 -0.17 -1.98 16 16 C 0.09 1.17 6.60 -2.53 -0.02 1.15 16 17 N -0.61 -9.56 3.06 -163.02 -0.50 -10.06 16 18 C 0.53 8.25 6.96 -10.98 -0.08 8.17 16 19 O -0.53 -10.27 14.83 5.55 0.08 -10.19 16 20 C -0.12 -1.32 2.04 -91.65 -0.19 -1.51 16 21 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 22 C -0.10 -0.96 4.46 -26.69 -0.12 -1.08 16 23 C -0.13 -0.83 6.10 -26.39 -0.16 -0.99 16 24 C 0.11 0.60 6.42 -3.49 -0.02 0.58 16 25 N -0.63 -5.50 2.97 -178.23 -0.53 -6.02 16 26 C 0.71 7.18 8.57 -86.92 -0.75 6.43 16 27 N -0.87 -4.86 8.78 27.63 0.24 -4.62 16 28 O -0.59 -8.55 16.60 5.29 0.09 -8.46 16 29 C 0.13 1.42 5.51 -3.71 -0.02 1.40 16 30 H -0.01 -0.16 7.84 -51.93 -0.41 -0.57 16 31 H 0.04 1.14 7.09 -51.93 -0.37 0.77 16 32 H 0.04 1.19 7.00 -51.93 -0.36 0.82 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.05 1.24 6.42 -51.93 -0.33 0.91 16 35 H 0.04 0.90 7.92 -51.93 -0.41 0.49 16 36 H 0.08 1.45 6.65 -51.93 -0.35 1.11 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.94 4.83 -51.93 -0.25 0.69 16 42 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 43 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.21 5.64 -51.93 -0.29 -0.08 16 48 H 0.41 1.89 8.93 -40.82 -0.36 1.52 16 49 H 0.40 1.07 6.32 -40.82 -0.26 0.81 16 50 H 0.11 1.29 4.05 -51.92 -0.21 1.08 16 51 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -35.12 385.73 -9.57 -44.69 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.17 Total: 1.23 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -1.58 Total: 13.53 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.78 Total: -63.72 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.12 -9.57 -44.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.867 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds