Wall clock time and date at job start Tue Mar 31 2020 20:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 120.00079 * 2 1 4 4 H 1.07998 * 120.00365 * 181.42547 * 3 2 1 5 5 C 1.38818 * 119.99718 * 1.42921 * 3 2 1 6 6 N 1.31617 * 120.00107 * 7.49010 * 5 3 2 7 7 Si 1.86796 * 119.99772 * 187.49821 * 5 3 2 8 8 H 1.48500 * 109.47306 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47248 * 119.99822 * 7 5 3 10 10 H 1.48501 * 109.46866 * 239.99603 * 7 5 3 11 11 C 1.46503 * 120.00120 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46803 * 89.89850 * 11 2 1 13 13 H 1.08997 * 110.00031 * 305.89096 * 12 11 2 14 14 C 1.54322 * 109.77673 * 67.04462 * 12 11 2 15 15 C 1.55149 * 102.86395 * 141.88276 * 14 12 11 16 16 C 1.54911 * 101.58622 * 324.30408 * 15 14 12 17 17 N 1.47023 * 109.88509 * 184.79221 * 12 11 2 18 18 C 1.34781 * 125.64470 * 61.67600 * 17 12 11 19 19 O 1.21284 * 120.00082 * 355.93484 * 18 17 12 20 20 C 1.50704 * 119.99838 * 175.93537 * 18 17 12 21 21 H 1.09000 * 109.49654 * 54.15337 * 20 18 17 22 22 C 1.53041 * 109.52204 * 174.23198 * 20 18 17 23 23 C 1.53040 * 109.53302 * 181.33379 * 22 20 18 24 24 C 1.53626 * 109.24286 * 298.50738 * 23 22 20 25 25 N 1.46924 * 108.54175 * 54.85987 * 24 23 22 26 26 C 1.34774 * 120.62956 * 126.36997 * 25 24 23 27 27 N 1.34775 * 120.00282 * 5.05120 * 26 25 24 28 28 O 1.21590 * 120.00128 * 185.05831 * 26 25 24 29 29 C 1.46926 * 118.73574 * 306.09529 * 25 24 23 30 30 H 1.09006 * 109.46566 * 174.49424 * 1 2 3 31 31 H 1.08997 * 109.46831 * 294.49237 * 1 2 3 32 32 H 1.09000 * 109.46943 * 54.49813 * 1 2 3 33 33 H 0.97000 * 119.99831 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.46932 * 329.90351 * 11 2 1 35 35 H 1.08995 * 109.47204 * 209.89339 * 11 2 1 36 36 H 1.09001 * 110.91920 * 23.46568 * 14 12 11 37 37 H 1.08998 * 110.74138 * 260.21893 * 14 12 11 38 38 H 1.08996 * 111.00555 * 206.22920 * 15 14 12 39 39 H 1.09007 * 111.00482 * 82.37943 * 15 14 12 40 40 H 1.08997 * 110.36671 * 278.17543 * 16 15 14 41 41 H 1.08997 * 110.36654 * 155.84682 * 16 15 14 42 42 H 1.08998 * 109.45686 * 301.34965 * 22 20 18 43 43 H 1.08994 * 109.46313 * 61.30821 * 22 20 18 44 44 H 1.08997 * 109.49937 * 58.59060 * 23 22 20 45 45 H 1.09001 * 109.49402 * 178.64828 * 23 22 20 46 46 H 1.09002 * 109.73709 * 295.12218 * 24 23 22 47 47 H 1.08998 * 109.66123 * 174.55265 * 24 23 22 48 48 H 0.96994 * 120.00521 * 175.15664 * 27 26 25 49 49 H 0.97004 * 119.99632 * 354.89272 * 27 26 25 50 50 H 1.09007 * 109.58585 * 173.64792 * 29 25 24 51 51 H 1.08999 * 109.58683 * 293.92405 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2295 1.1861 -0.0233 5 6 1.4559 2.3879 0.0300 6 7 0.1517 2.3907 0.2068 7 14 2.3734 4.0013 -0.1809 8 1 3.8215 3.7273 -0.3623 9 1 1.8511 4.7155 -1.3734 10 1 2.1769 4.8438 1.0261 11 6 2.1976 -1.2687 0.0006 12 6 2.4503 -1.7123 -1.4417 13 1 1.5099 -1.7452 -1.9919 14 6 3.4273 -0.7328 -2.1256 15 6 4.3051 -1.6712 -2.9951 16 6 4.4065 -2.9265 -2.0930 17 7 3.0831 -3.0393 -1.4533 18 6 2.5407 -4.1724 -0.9649 19 8 1.4700 -4.1361 -0.3964 20 6 3.2647 -5.4843 -1.1252 21 1 4.2754 -5.3931 -0.7273 22 6 2.5133 -6.5794 -0.3648 23 6 3.2662 -7.9049 -0.4999 24 6 3.3293 -8.3026 -1.9825 25 7 3.9231 -7.1920 -2.7392 26 6 4.9870 -7.3984 -3.5404 27 7 5.4532 -8.6482 -3.7331 28 8 5.5263 -6.4570 -4.0894 29 6 3.3313 -5.8534 -2.6105 30 1 -0.3633 -1.0230 -0.0986 31 1 -0.3633 0.4260 0.9352 32 1 -0.3633 0.5968 -0.8366 33 1 -0.3331 3.2306 0.2274 34 1 1.6092 -2.0277 0.5162 35 1 3.1508 -1.1377 0.5127 36 1 4.0355 -0.2105 -1.3870 37 1 2.8869 -0.0217 -2.7504 38 1 5.2887 -1.2352 -3.1698 39 1 3.8107 -1.9064 -3.9377 40 1 5.1819 -2.7903 -1.3392 41 1 4.6132 -3.8110 -2.6956 42 1 2.4431 -6.3074 0.6883 43 1 1.5110 -6.6871 -0.7794 44 1 4.2768 -7.7909 -0.1078 45 1 2.7433 -8.6791 0.0618 46 1 2.3238 -8.5012 -2.3534 47 1 3.9460 -9.1939 -2.0971 48 1 6.1733 -8.8054 -4.3635 49 1 5.0711 -9.3899 -3.2384 50 1 3.9494 -5.1281 -3.1399 51 1 2.3269 -5.8556 -3.0341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717368764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:14 Heat of formation + Delta-G solvation = -47.760354 kcal Electronic energy + Delta-G solvation = -31307.456103 eV Core-core repulsion = 27242.027030 eV Total energy + Delta-G solvation = -4065.429073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.85304 -40.90583 -39.05367 -37.90520 -37.18949 -35.07861 -33.61710 -33.31595 -32.89244 -31.76236 -30.42276 -28.02937 -26.84623 -26.42269 -25.67269 -23.81468 -22.89153 -22.62876 -21.49729 -20.54872 -19.96807 -19.25814 -18.88319 -18.15433 -17.80266 -17.44863 -16.78304 -16.59043 -15.97423 -15.89586 -15.84640 -15.48028 -15.33244 -15.08481 -14.81394 -14.55899 -14.48340 -14.15276 -14.09366 -13.93066 -13.67505 -13.61928 -13.38326 -12.82993 -12.78434 -12.66711 -12.52868 -12.31038 -12.16213 -12.01801 -11.99087 -11.88670 -11.83908 -11.62860 -11.52299 -11.42989 -11.30157 -10.75288 -10.67180 -10.65992 -9.75650 -9.64364 -8.89665 -7.72318 -5.17050 1.46636 1.48145 1.48683 1.59000 1.78341 2.01178 2.14906 2.53733 3.21309 3.35550 3.41541 3.63468 3.65259 3.78356 3.82904 3.86747 4.01627 4.04913 4.11109 4.18787 4.28327 4.38879 4.47535 4.51601 4.52920 4.63346 4.73084 4.77361 4.84803 4.87247 4.90003 4.98724 5.03991 5.08833 5.10237 5.14267 5.18598 5.36431 5.39366 5.41082 5.47023 5.52818 5.62379 5.79385 5.84103 6.04542 6.28938 6.59102 6.91878 7.14424 7.17518 7.62463 7.87661 8.30684 9.27746 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.002791 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.441027 B =10029.169562 C =11001.384629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.192 3.808 2 N -0.621 5.621 3 C -0.238 4.238 4 H 0.086 0.914 5 C -0.069 4.069 6 N -0.952 5.952 7 Si 0.973 3.027 8 H -0.261 1.261 9 H -0.294 1.294 10 H -0.297 1.297 11 C 0.156 3.844 12 C 0.125 3.875 13 H 0.040 0.960 14 C -0.105 4.105 15 C -0.124 4.124 16 C 0.093 3.907 17 N -0.610 5.610 18 C 0.524 3.476 19 O -0.576 6.576 20 C -0.103 4.103 21 H 0.107 0.893 22 C -0.100 4.100 23 C -0.125 4.125 24 C 0.104 3.896 25 N -0.624 5.624 26 C 0.703 3.297 27 N -0.847 5.847 28 O -0.639 6.639 29 C 0.139 3.861 30 H 0.005 0.995 31 H 0.013 0.987 32 H 0.020 0.980 33 H 0.243 0.757 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.113 0.887 48 H 0.421 0.579 49 H 0.412 0.588 50 H 0.094 0.906 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.548 -27.877 -7.310 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.345 5.345 3 C -0.367 4.367 4 H 0.104 0.896 5 C -0.261 4.261 6 N -0.602 5.602 7 Si 0.802 3.198 8 H -0.185 1.185 9 H -0.221 1.221 10 H -0.225 1.225 11 C 0.028 3.972 12 C 0.019 3.981 13 H 0.058 0.942 14 C -0.143 4.143 15 C -0.162 4.162 16 C -0.029 4.029 17 N -0.343 5.343 18 C 0.313 3.687 19 O -0.455 6.455 20 C -0.125 4.125 21 H 0.125 0.875 22 C -0.138 4.138 23 C -0.163 4.163 24 C -0.017 4.017 25 N -0.361 5.361 26 C 0.403 3.597 27 N -0.418 5.418 28 O -0.520 6.520 29 C 0.015 3.985 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.131 0.869 48 H 0.254 0.746 49 H 0.245 0.755 50 H 0.112 0.888 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.098 -27.132 -7.243 30.577 hybrid contribution -0.266 1.143 0.177 1.187 sum 11.832 -25.989 -7.066 29.417 Atomic orbital electron populations 1.20630 0.82451 0.93037 0.99213 1.44199 1.02237 1.01565 1.86475 1.19695 0.91275 0.83922 1.41831 0.89619 1.25684 0.96654 1.01126 1.02621 1.70447 1.07430 1.24665 1.57680 0.85086 0.78496 0.79724 0.76530 1.18456 1.22091 1.22502 1.21018 0.95257 0.86623 0.94281 1.22187 0.95617 0.81919 0.98366 0.94153 1.22420 0.96781 0.96389 0.98685 1.22815 1.01463 0.94231 0.97658 1.22710 0.83759 1.00077 0.96324 1.48807 1.19515 1.07342 1.58636 1.20779 0.85224 0.85167 0.77513 1.90698 1.24120 1.86889 1.43801 1.21618 1.01189 0.91285 0.98444 0.87516 1.21346 0.98879 0.93680 0.99911 1.21993 1.01496 0.96520 0.96276 1.22091 1.00153 0.88547 0.90949 1.47203 1.31473 1.09943 1.47481 1.16060 0.79981 0.84298 0.79381 1.42947 1.42970 1.06673 1.49244 1.90943 1.61996 1.43001 1.56089 1.21340 0.98960 0.84640 0.93570 0.97682 0.96862 0.96147 0.94743 0.94658 0.93822 0.91151 0.91739 0.87631 0.90442 0.90167 0.88602 0.92030 0.91774 0.90874 0.87745 0.89981 0.86939 0.74615 0.75465 0.88782 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.72 8.98 127.77 1.15 11.87 16 2 N -0.62 -33.31 2.87 -726.93 -2.09 -35.39 16 3 C -0.24 -13.15 8.79 84.03 0.74 -12.41 16 4 H 0.09 4.46 6.92 -2.91 -0.02 4.44 16 5 C -0.07 -3.93 5.41 84.86 0.46 -3.47 16 6 N -0.95 -58.38 9.51 21.65 0.21 -58.18 16 7 Si 0.97 45.91 29.56 68.60 2.03 47.94 16 8 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 10 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 11 C 0.16 7.09 5.12 86.38 0.44 7.53 16 12 C 0.13 4.82 3.14 45.34 0.14 4.97 16 13 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 14 C -0.10 -3.55 5.55 31.78 0.18 -3.37 16 15 C -0.12 -3.01 7.08 31.98 0.23 -2.79 16 16 C 0.09 2.22 6.60 86.86 0.57 2.79 16 17 N -0.61 -19.05 3.06 -788.05 -2.41 -21.46 16 18 C 0.52 16.46 6.96 87.66 0.61 17.07 16 19 O -0.58 -23.09 14.83 -3.04 -0.05 -23.13 16 20 C -0.10 -2.21 2.04 -11.46 -0.02 -2.23 16 21 H 0.11 2.10 8.09 -2.39 -0.02 2.08 16 22 C -0.10 -1.82 4.46 30.62 0.14 -1.68 16 23 C -0.12 -1.14 6.10 30.82 0.19 -0.95 16 24 C 0.10 0.77 6.42 86.51 0.56 1.32 16 25 N -0.62 -9.35 2.97 -836.07 -2.48 -11.83 16 26 C 0.70 12.44 8.57 179.06 1.53 13.98 16 27 N -0.85 -6.62 8.78 -184.75 -1.62 -8.24 16 28 O -0.64 -17.48 16.60 -4.00 -0.07 -17.54 16 29 C 0.14 2.79 5.51 86.36 0.48 3.26 16 30 H 0.00 0.24 7.84 -2.38 -0.02 0.23 16 31 H 0.01 0.79 7.09 -2.39 -0.02 0.77 16 32 H 0.02 1.20 7.00 -2.39 -0.02 1.18 16 33 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.04 1.72 6.42 -2.39 -0.02 1.70 16 35 H 0.04 1.94 7.92 -2.39 -0.02 1.92 16 36 H 0.07 2.52 6.65 -2.39 -0.02 2.50 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.10 2.07 4.83 -2.39 -0.01 2.06 16 42 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 43 H 0.06 1.31 8.07 -2.39 -0.02 1.29 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.11 0.05 5.64 -2.39 -0.01 0.04 16 48 H 0.42 2.56 8.93 -92.71 -0.83 1.73 16 49 H 0.41 0.43 6.32 -92.71 -0.59 -0.16 16 50 H 0.09 2.15 4.05 -2.38 -0.01 2.14 16 51 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -80.01 385.73 0.44 -79.57 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -0.45 Total: 12.38 kcal Atomic # 6 Polarization: 28.51 SS G_CDS: 7.38 Total: 35.89 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -8.40 Total: -135.10 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -0.11 Total: -40.68 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -80.01 0.44 -79.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.806 kcal (2) G-P(sol) polarization free energy of solvation -80.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds