Wall clock time and date at job start Tue Mar 31 2020 20:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 120.00156 * 2 1 4 4 H 1.07994 * 120.00240 * 183.87084 * 3 2 1 5 5 C 1.38811 * 119.99547 * 3.86922 * 3 2 1 6 6 N 1.31621 * 120.00530 * 5.20799 * 5 3 2 7 7 Si 1.86802 * 119.99647 * 185.21336 * 5 3 2 8 8 H 1.48500 * 109.47177 * 90.00067 * 7 5 3 9 9 H 1.48499 * 109.47101 * 209.99699 * 7 5 3 10 10 H 1.48500 * 109.47168 * 329.99783 * 7 5 3 11 11 C 1.46504 * 119.99793 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47145 * 275.28881 * 11 2 1 13 13 H 1.09002 * 109.87381 * 56.42858 * 12 11 2 14 14 C 1.54323 * 109.88904 * 295.41102 * 12 11 2 15 15 C 1.55159 * 102.94134 * 218.23426 * 14 12 11 16 16 C 1.54907 * 101.58218 * 35.50070 * 15 14 12 17 17 N 1.47020 * 110.01087 * 177.51978 * 12 11 2 18 18 C 1.34785 * 125.65286 * 298.40382 * 17 12 11 19 19 O 1.21282 * 119.99594 * 4.88552 * 18 17 12 20 20 C 1.50690 * 120.00111 * 184.89201 * 18 17 12 21 21 H 1.09000 * 109.50385 * 59.99317 * 20 18 17 22 22 C 1.53037 * 109.49800 * 180.02562 * 20 18 17 23 23 C 1.53042 * 109.54122 * 181.31354 * 22 20 18 24 24 C 1.53185 * 109.31183 * 298.63537 * 23 22 20 25 25 N 1.46923 * 108.77737 * 54.63444 * 24 23 22 26 26 C 1.34775 * 120.62973 * 126.38859 * 25 24 23 27 27 N 1.34775 * 120.00570 * 4.78317 * 26 25 24 28 28 O 1.21595 * 119.99917 * 184.77854 * 26 25 24 29 29 C 1.46927 * 118.76340 * 306.40932 * 25 24 23 30 30 H 1.09002 * 109.46519 * 181.92249 * 1 2 3 31 31 H 1.09002 * 109.47052 * 301.92164 * 1 2 3 32 32 H 1.09000 * 109.47139 * 61.92438 * 1 2 3 33 33 H 0.96998 * 119.99976 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46650 * 155.29719 * 11 2 1 35 35 H 1.08998 * 109.47152 * 35.29649 * 11 2 1 36 36 H 1.09001 * 110.71686 * 336.59639 * 14 12 11 37 37 H 1.08994 * 110.72266 * 99.87201 * 14 12 11 38 38 H 1.09003 * 111.00127 * 153.57105 * 15 14 12 39 39 H 1.08995 * 111.00284 * 277.42027 * 15 14 12 40 40 H 1.09002 * 110.36802 * 204.15125 * 16 15 14 41 41 H 1.09005 * 110.36978 * 81.82513 * 16 15 14 42 42 H 1.08999 * 109.46004 * 301.33441 * 22 20 18 43 43 H 1.09006 * 109.46310 * 61.29233 * 22 20 18 44 44 H 1.09005 * 109.49655 * 58.58719 * 23 22 20 45 45 H 1.09000 * 109.50057 * 178.67958 * 23 22 20 46 46 H 1.09005 * 109.58468 * 174.42324 * 24 23 22 47 47 H 1.09000 * 109.58606 * 294.70205 * 24 23 22 48 48 H 0.97001 * 119.99196 * 355.03016 * 27 26 25 49 49 H 0.96998 * 120.00213 * 175.01719 * 27 26 25 50 50 H 1.08995 * 109.56782 * 293.78557 * 29 25 24 51 51 H 1.09006 * 109.61992 * 173.35783 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2279 1.1870 -0.0631 5 6 1.4580 2.3866 0.0811 6 7 0.1542 2.3843 0.2611 7 14 2.3777 4.0060 -0.0653 8 1 2.4298 4.4185 -1.4909 9 1 1.6748 5.0477 0.7259 10 1 3.7594 3.8392 0.4526 11 6 2.1975 -1.2688 0.0006 12 6 2.3373 -1.7763 1.4371 13 1 1.3524 -1.8702 1.8944 14 6 3.2056 -0.7989 2.2570 15 6 4.0420 -1.7473 3.1560 16 6 4.2750 -2.9497 2.2075 17 7 3.0191 -3.0789 1.4464 18 6 2.5699 -4.2049 0.8573 19 8 1.5637 -4.1754 0.1808 20 6 3.3179 -5.5003 1.0392 21 1 3.3538 -5.7541 2.0986 22 6 2.6032 -6.6149 0.2717 23 6 3.3436 -7.9376 0.4825 24 6 4.7696 -7.8125 -0.0630 25 7 5.4161 -6.6523 0.5652 26 6 6.6035 -6.7825 1.1894 27 7 7.2552 -7.9618 1.1590 28 8 7.0869 -5.8358 1.7798 29 6 4.7439 -5.3475 0.5007 30 1 -0.3632 -1.0271 0.0345 31 1 -0.3633 0.5434 0.8723 32 1 -0.3633 0.4837 -0.9067 33 1 -0.3291 3.2233 0.3182 34 1 3.1877 -1.1168 -0.4290 35 1 1.6528 -2.0031 -0.5929 36 1 3.8540 -0.2168 1.6022 37 1 2.5806 -0.1439 2.8640 38 1 4.9873 -1.2843 3.4393 39 1 3.4768 -2.0491 4.0378 40 1 4.4648 -3.8557 2.7830 41 1 5.1075 -2.7458 1.5339 42 1 1.5805 -6.7091 0.6367 43 1 2.5884 -6.3724 -0.7909 44 1 3.3803 -8.1684 1.5472 45 1 2.8208 -8.7353 -0.0453 46 1 5.3316 -8.7162 0.1728 47 1 4.7366 -7.6744 -1.1437 48 1 6.8377 -8.7362 0.7505 49 1 8.1418 -8.0361 1.5455 50 1 4.7092 -5.0054 -0.5336 51 1 5.2884 -4.6248 1.1086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717368765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:19 Heat of formation + Delta-G solvation = -24.706369 kcal Electronic energy + Delta-G solvation = -31394.630364 eV Core-core repulsion = 27330.200986 eV Total energy + Delta-G solvation = -4064.429378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.91189 -39.81686 -37.86198 -36.84065 -35.27410 -34.30416 -32.62379 -32.18877 -31.31290 -30.67115 -28.78942 -25.87768 -25.69446 -25.32597 -24.46700 -22.66327 -21.76422 -21.14163 -20.10837 -19.83933 -18.82820 -18.36740 -17.26752 -16.97652 -16.69905 -16.06002 -15.54303 -15.45625 -15.05584 -14.74324 -14.62347 -14.38939 -13.74720 -13.67797 -13.56808 -13.34339 -13.29141 -13.22617 -12.82089 -12.64457 -12.39388 -12.05677 -11.80850 -11.66256 -11.30914 -11.23755 -10.98643 -10.90805 -10.87310 -10.73013 -10.68053 -10.47833 -10.36313 -10.19257 -10.06233 -10.02089 -9.76534 -9.67752 -9.37962 -8.92658 -8.56695 -8.28017 -6.79573 -5.51923 -2.98489 2.38054 2.82879 2.93937 3.22681 3.43337 3.48908 3.50223 3.73701 4.31879 4.45109 4.56332 4.56979 4.67242 4.73527 4.86939 4.95341 5.06708 5.18305 5.23590 5.33981 5.41535 5.48667 5.51931 5.54020 5.59021 5.70915 5.74388 5.78845 5.91559 5.92661 6.03894 6.07766 6.09667 6.17326 6.41578 6.42059 6.49007 6.57936 6.64999 6.76133 6.91237 6.97341 7.07875 7.50629 7.70717 7.81905 7.86606 8.05477 8.29602 8.42428 8.49730 9.36204 9.99696 10.43745 11.43885 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.002892 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.291292 B = 9679.121809 C =10478.608784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.605 5.605 3 C -0.237 4.237 4 H 0.073 0.927 5 C -0.008 4.008 6 N -0.918 5.918 7 Si 0.906 3.094 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.282 1.282 11 C 0.149 3.851 12 C 0.114 3.886 13 H 0.067 0.933 14 C -0.106 4.106 15 C -0.138 4.138 16 C 0.098 3.902 17 N -0.609 5.609 18 C 0.530 3.470 19 O -0.532 6.532 20 C -0.118 4.118 21 H 0.097 0.903 22 C -0.100 4.100 23 C -0.135 4.135 24 C 0.109 3.891 25 N -0.626 5.626 26 C 0.709 3.291 27 N -0.869 5.869 28 O -0.590 6.590 29 C 0.130 3.870 30 H -0.007 1.007 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.248 0.752 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.395 0.605 49 H 0.413 0.587 50 H 0.073 0.927 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.396 -24.619 3.191 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.329 5.329 3 C -0.366 4.366 4 H 0.091 0.909 5 C -0.204 4.204 6 N -0.567 5.567 7 Si 0.737 3.263 8 H -0.218 1.218 9 H -0.219 1.219 10 H -0.207 1.207 11 C 0.020 3.980 12 C 0.009 3.991 13 H 0.085 0.915 14 C -0.144 4.144 15 C -0.176 4.176 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.317 3.683 19 O -0.409 6.409 20 C -0.140 4.140 21 H 0.115 0.885 22 C -0.138 4.138 23 C -0.173 4.173 24 C -0.014 4.014 25 N -0.364 5.364 26 C 0.409 3.591 27 N -0.440 5.440 28 O -0.467 6.467 29 C 0.006 3.994 30 H 0.012 0.988 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.226 0.774 49 H 0.245 0.755 50 H 0.091 0.909 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.883 -23.771 3.125 26.330 hybrid contribution 0.605 0.429 -0.006 0.742 sum 11.488 -23.342 3.119 26.202 Atomic orbital electron populations 1.21126 0.81598 0.93350 1.01906 1.44021 1.02463 1.00320 1.86063 1.19311 0.90881 0.83617 1.42828 0.90929 1.24845 0.95799 0.97706 1.02043 1.70199 1.05823 1.24329 1.56309 0.86210 0.78621 0.83950 0.77519 1.21760 1.21854 1.20717 1.21050 0.96225 0.88357 0.92350 1.22717 0.95315 0.80109 1.00940 0.91529 1.22516 0.98044 0.96373 0.97468 1.22843 1.01008 0.95942 0.97812 1.22432 0.86912 0.99096 0.94115 1.48791 1.22797 1.10139 1.52637 1.19905 0.85165 0.83759 0.79476 1.90718 1.26045 1.85334 1.38780 1.21674 0.95653 0.94184 1.02501 0.88520 1.21330 0.99206 0.92015 1.01229 1.21954 0.94960 0.98410 1.01965 1.21705 0.93898 0.87843 0.97998 1.47232 1.20315 1.10318 1.58532 1.15846 0.80618 0.83475 0.79184 1.43163 1.22414 1.11262 1.67111 1.90980 1.68324 1.39148 1.48283 1.21656 0.90799 0.84461 1.02443 0.98843 0.91817 0.95881 0.94107 0.93821 0.93081 0.90099 0.90094 0.90248 0.91245 0.91019 0.91145 0.90516 0.90676 0.91386 0.90089 0.90500 0.90842 0.77445 0.75462 0.90881 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.37 9.03 59.85 0.54 4.91 16 2 N -0.61 -15.70 2.80 -181.12 -0.51 -16.20 16 3 C -0.24 -6.48 8.73 -15.06 -0.13 -6.61 16 4 H 0.07 1.92 7.42 -52.49 -0.39 1.53 16 5 C -0.01 -0.23 5.43 -17.43 -0.09 -0.33 16 6 N -0.92 -27.04 9.50 55.49 0.53 -26.52 16 7 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 8 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.15 3.29 5.05 -4.04 -0.02 3.27 16 12 C 0.11 2.17 3.15 -66.96 -0.21 1.96 16 13 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.11 -1.85 5.70 -24.90 -0.14 -1.99 16 15 C -0.14 -1.84 7.08 -24.58 -0.17 -2.01 16 16 C 0.10 1.27 5.11 -2.53 -0.01 1.26 16 17 N -0.61 -9.62 3.07 -163.02 -0.50 -10.12 16 18 C 0.53 8.28 7.06 -10.99 -0.08 8.20 16 19 O -0.53 -10.29 14.81 5.56 0.08 -10.21 16 20 C -0.12 -1.33 2.02 -91.65 -0.18 -1.52 16 21 H 0.10 1.04 7.95 -51.93 -0.41 0.63 16 22 C -0.10 -0.97 4.46 -26.69 -0.12 -1.09 16 23 C -0.13 -0.84 6.08 -26.61 -0.16 -1.00 16 24 C 0.11 0.62 6.39 -3.72 -0.02 0.60 16 25 N -0.63 -5.64 2.97 -178.50 -0.53 -6.18 16 26 C 0.71 7.34 8.57 -86.92 -0.75 6.59 16 27 N -0.87 -5.05 8.78 27.63 0.24 -4.80 16 28 O -0.59 -8.67 16.59 5.28 0.09 -8.58 16 29 C 0.13 1.42 5.38 -3.71 -0.02 1.40 16 30 H -0.01 -0.18 7.88 -51.93 -0.41 -0.58 16 31 H 0.06 1.81 6.47 -51.93 -0.34 1.47 16 32 H 0.02 0.65 7.57 -51.93 -0.39 0.26 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.04 0.95 7.90 -51.93 -0.41 0.54 16 35 H 0.05 1.19 6.54 -51.93 -0.34 0.85 16 36 H 0.08 1.52 6.98 -51.93 -0.36 1.16 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.83 7.01 -51.93 -0.36 0.47 16 41 H 0.07 0.90 7.40 -51.93 -0.38 0.52 16 42 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 43 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.23 5.64 -51.93 -0.29 -0.07 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.40 1.15 6.31 -40.82 -0.26 0.89 16 49 H 0.41 1.97 8.93 -40.82 -0.36 1.61 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.11 1.33 3.86 -51.93 -0.20 1.13 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -34.83 386.14 -9.66 -44.48 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.27 Total: 1.52 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: -1.58 Total: 13.65 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.77 Total: -63.81 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.17 Total: -18.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.83 -9.66 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.778 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds