Wall clock time and date at job start Tue Mar 31 2020 20:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 120.00156 * 2 1 4 4 H 1.07994 * 120.00240 * 183.87084 * 3 2 1 5 5 C 1.38811 * 119.99547 * 3.86922 * 3 2 1 6 6 N 1.31621 * 120.00530 * 5.20799 * 5 3 2 7 7 Si 1.86802 * 119.99647 * 185.21336 * 5 3 2 8 8 H 1.48500 * 109.47177 * 90.00067 * 7 5 3 9 9 H 1.48499 * 109.47101 * 209.99699 * 7 5 3 10 10 H 1.48500 * 109.47168 * 329.99783 * 7 5 3 11 11 C 1.46504 * 119.99793 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47145 * 275.28881 * 11 2 1 13 13 H 1.09002 * 109.87381 * 56.42858 * 12 11 2 14 14 C 1.54323 * 109.88904 * 295.41102 * 12 11 2 15 15 C 1.55159 * 102.94134 * 218.23426 * 14 12 11 16 16 C 1.54907 * 101.58218 * 35.50070 * 15 14 12 17 17 N 1.47020 * 110.01087 * 177.51978 * 12 11 2 18 18 C 1.34785 * 125.65286 * 298.40382 * 17 12 11 19 19 O 1.21282 * 119.99594 * 4.88552 * 18 17 12 20 20 C 1.50690 * 120.00111 * 184.89201 * 18 17 12 21 21 H 1.09000 * 109.50385 * 59.99317 * 20 18 17 22 22 C 1.53037 * 109.49800 * 180.02562 * 20 18 17 23 23 C 1.53042 * 109.54122 * 181.31354 * 22 20 18 24 24 C 1.53185 * 109.31183 * 298.63537 * 23 22 20 25 25 N 1.46923 * 108.77737 * 54.63444 * 24 23 22 26 26 C 1.34775 * 120.62973 * 126.38859 * 25 24 23 27 27 N 1.34775 * 120.00570 * 4.78317 * 26 25 24 28 28 O 1.21595 * 119.99917 * 184.77854 * 26 25 24 29 29 C 1.46927 * 118.76340 * 306.40932 * 25 24 23 30 30 H 1.09002 * 109.46519 * 181.92249 * 1 2 3 31 31 H 1.09002 * 109.47052 * 301.92164 * 1 2 3 32 32 H 1.09000 * 109.47139 * 61.92438 * 1 2 3 33 33 H 0.96998 * 119.99976 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46650 * 155.29719 * 11 2 1 35 35 H 1.08998 * 109.47152 * 35.29649 * 11 2 1 36 36 H 1.09001 * 110.71686 * 336.59639 * 14 12 11 37 37 H 1.08994 * 110.72266 * 99.87201 * 14 12 11 38 38 H 1.09003 * 111.00127 * 153.57105 * 15 14 12 39 39 H 1.08995 * 111.00284 * 277.42027 * 15 14 12 40 40 H 1.09002 * 110.36802 * 204.15125 * 16 15 14 41 41 H 1.09005 * 110.36978 * 81.82513 * 16 15 14 42 42 H 1.08999 * 109.46004 * 301.33441 * 22 20 18 43 43 H 1.09006 * 109.46310 * 61.29233 * 22 20 18 44 44 H 1.09005 * 109.49655 * 58.58719 * 23 22 20 45 45 H 1.09000 * 109.50057 * 178.67958 * 23 22 20 46 46 H 1.09005 * 109.58468 * 174.42324 * 24 23 22 47 47 H 1.09000 * 109.58606 * 294.70205 * 24 23 22 48 48 H 0.97001 * 119.99196 * 355.03016 * 27 26 25 49 49 H 0.96998 * 120.00213 * 175.01719 * 27 26 25 50 50 H 1.08995 * 109.56782 * 293.78557 * 29 25 24 51 51 H 1.09006 * 109.61992 * 173.35783 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2279 1.1870 -0.0631 5 6 1.4580 2.3866 0.0811 6 7 0.1542 2.3843 0.2611 7 14 2.3777 4.0060 -0.0653 8 1 2.4298 4.4185 -1.4909 9 1 1.6748 5.0477 0.7259 10 1 3.7594 3.8392 0.4526 11 6 2.1975 -1.2688 0.0006 12 6 2.3373 -1.7763 1.4371 13 1 1.3524 -1.8702 1.8944 14 6 3.2056 -0.7989 2.2570 15 6 4.0420 -1.7473 3.1560 16 6 4.2750 -2.9497 2.2075 17 7 3.0191 -3.0789 1.4464 18 6 2.5699 -4.2049 0.8573 19 8 1.5637 -4.1754 0.1808 20 6 3.3179 -5.5003 1.0392 21 1 3.3538 -5.7541 2.0986 22 6 2.6032 -6.6149 0.2717 23 6 3.3436 -7.9376 0.4825 24 6 4.7696 -7.8125 -0.0630 25 7 5.4161 -6.6523 0.5652 26 6 6.6035 -6.7825 1.1894 27 7 7.2552 -7.9618 1.1590 28 8 7.0869 -5.8358 1.7798 29 6 4.7439 -5.3475 0.5007 30 1 -0.3632 -1.0271 0.0345 31 1 -0.3633 0.5434 0.8723 32 1 -0.3633 0.4837 -0.9067 33 1 -0.3291 3.2233 0.3182 34 1 3.1877 -1.1168 -0.4290 35 1 1.6528 -2.0031 -0.5929 36 1 3.8540 -0.2168 1.6022 37 1 2.5806 -0.1439 2.8640 38 1 4.9873 -1.2843 3.4393 39 1 3.4768 -2.0491 4.0378 40 1 4.4648 -3.8557 2.7830 41 1 5.1075 -2.7458 1.5339 42 1 1.5805 -6.7091 0.6367 43 1 2.5884 -6.3724 -0.7909 44 1 3.3803 -8.1684 1.5472 45 1 2.8208 -8.7353 -0.0453 46 1 5.3316 -8.7162 0.1728 47 1 4.7366 -7.6744 -1.1437 48 1 6.8377 -8.7362 0.7505 49 1 8.1418 -8.0361 1.5455 50 1 4.7092 -5.0054 -0.5336 51 1 5.2884 -4.6248 1.1086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717368765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:18 Heat of formation + Delta-G solvation = -49.352428 kcal Electronic energy + Delta-G solvation = -31395.699097 eV Core-core repulsion = 27330.200986 eV Total energy + Delta-G solvation = -4065.498111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.85872 -40.89783 -39.04603 -37.91475 -37.19304 -35.07236 -33.62419 -33.30939 -32.91465 -31.74098 -30.40321 -28.04377 -26.88638 -26.38931 -25.66824 -23.78099 -22.88798 -22.66740 -21.43638 -20.61360 -19.91527 -19.22735 -18.90606 -18.14096 -17.86481 -17.36565 -16.76338 -16.50777 -16.29909 -15.83170 -15.61019 -15.41498 -15.33816 -15.07635 -14.86312 -14.54112 -14.44642 -14.18439 -14.10971 -13.97301 -13.88201 -13.38078 -13.34709 -12.86166 -12.77387 -12.68447 -12.48750 -12.29599 -12.12641 -12.03612 -11.99624 -11.87971 -11.85352 -11.66073 -11.51014 -11.48343 -11.29118 -10.76614 -10.67555 -10.66353 -9.77863 -9.62791 -8.89442 -7.68463 -5.17750 1.47462 1.47995 1.50351 1.58024 1.79509 1.99543 2.15481 2.53668 3.21950 3.36330 3.43164 3.61277 3.68468 3.78799 3.82259 3.87072 4.02413 4.05951 4.11926 4.19250 4.29763 4.42967 4.48423 4.52099 4.57121 4.64224 4.73669 4.77137 4.77727 4.87460 4.89619 4.95292 5.03827 5.08550 5.09160 5.15385 5.17563 5.36978 5.39651 5.42359 5.45994 5.48224 5.64256 5.82201 5.85110 6.05223 6.31405 6.58657 6.92956 7.14031 7.18186 7.63511 7.87989 8.30416 9.27495 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.002892 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.291292 B = 9679.121809 C =10478.608784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.619 5.619 3 C -0.239 4.239 4 H 0.082 0.918 5 C -0.065 4.065 6 N -0.950 5.950 7 Si 0.973 3.027 8 H -0.292 1.292 9 H -0.297 1.297 10 H -0.264 1.264 11 C 0.156 3.844 12 C 0.125 3.875 13 H 0.039 0.961 14 C -0.103 4.103 15 C -0.124 4.124 16 C 0.100 3.900 17 N -0.610 5.610 18 C 0.524 3.476 19 O -0.575 6.575 20 C -0.103 4.103 21 H 0.109 0.891 22 C -0.100 4.100 23 C -0.125 4.125 24 C 0.104 3.896 25 N -0.623 5.623 26 C 0.703 3.297 27 N -0.847 5.847 28 O -0.638 6.638 29 C 0.135 3.865 30 H 0.004 0.996 31 H 0.043 0.957 32 H -0.003 1.003 33 H 0.243 0.757 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.112 0.888 47 H 0.081 0.919 48 H 0.412 0.588 49 H 0.421 0.579 50 H 0.065 0.935 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.101 -27.139 3.865 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.343 5.343 3 C -0.369 4.369 4 H 0.100 0.900 5 C -0.258 4.258 6 N -0.600 5.600 7 Si 0.802 3.198 8 H -0.219 1.219 9 H -0.223 1.223 10 H -0.189 1.189 11 C 0.028 3.972 12 C 0.019 3.981 13 H 0.058 0.942 14 C -0.141 4.141 15 C -0.162 4.162 16 C -0.021 4.021 17 N -0.343 5.343 18 C 0.313 3.687 19 O -0.455 6.455 20 C -0.125 4.125 21 H 0.127 0.873 22 C -0.138 4.138 23 C -0.163 4.163 24 C -0.018 4.018 25 N -0.361 5.361 26 C 0.402 3.598 27 N -0.419 5.419 28 O -0.520 6.520 29 C 0.010 3.990 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.015 0.985 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.130 0.870 47 H 0.099 0.901 48 H 0.245 0.755 49 H 0.254 0.746 50 H 0.083 0.917 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.642 -26.393 3.796 29.952 hybrid contribution -0.256 1.106 -0.277 1.168 sum 13.386 -25.287 3.520 28.827 Atomic orbital electron populations 1.20758 0.82428 0.93198 0.99601 1.44185 1.02263 1.01453 1.86387 1.19628 0.91371 0.84102 1.41758 0.90001 1.25655 0.96655 1.01012 1.02458 1.70399 1.07280 1.24631 1.57667 0.85157 0.78118 0.79527 0.77026 1.21899 1.22334 1.18885 1.21028 0.95376 0.86519 0.94252 1.22198 0.95092 0.82419 0.98437 0.94233 1.22361 0.97793 0.96331 0.97599 1.22834 1.01408 0.94670 0.97265 1.22588 0.85456 1.00048 0.94034 1.48817 1.23506 1.08981 1.53008 1.20786 0.84773 0.84876 0.78217 1.90696 1.28096 1.86107 1.40583 1.21616 0.95492 0.91875 1.03494 0.87326 1.21346 0.98951 0.93457 1.00042 1.21919 0.94929 0.96652 1.02766 1.21991 0.93744 0.87845 0.98235 1.47203 1.20096 1.10390 1.58393 1.16066 0.80813 0.83947 0.78933 1.42948 1.22365 1.10385 1.66176 1.90946 1.69535 1.41061 1.50409 1.21428 0.90248 0.85651 1.01646 0.97729 0.93884 0.98456 0.94727 0.93562 0.94779 0.91357 0.92069 0.87783 0.90139 0.88752 0.90510 0.91868 0.91927 0.90839 0.87698 0.86976 0.90105 0.75485 0.74629 0.91669 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.30 9.03 127.77 1.15 11.46 16 2 N -0.62 -33.17 2.80 -726.92 -2.03 -35.21 16 3 C -0.24 -13.27 8.73 84.03 0.73 -12.53 16 4 H 0.08 4.31 7.42 -2.91 -0.02 4.29 16 5 C -0.07 -3.74 5.43 84.86 0.46 -3.27 16 6 N -0.95 -57.71 9.50 21.65 0.21 -57.50 16 7 Si 0.97 46.01 29.56 68.60 2.03 48.04 16 8 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 9 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 C 0.16 7.11 5.05 86.38 0.44 7.54 16 12 C 0.12 4.85 3.15 45.34 0.14 4.99 16 13 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 14 C -0.10 -3.58 5.70 31.78 0.18 -3.40 16 15 C -0.12 -3.06 7.08 31.99 0.23 -2.83 16 16 C 0.10 2.45 5.11 86.85 0.44 2.89 16 17 N -0.61 -19.16 3.07 -788.06 -2.42 -21.58 16 18 C 0.52 16.48 7.06 87.65 0.62 17.10 16 19 O -0.58 -23.04 14.81 -3.04 -0.04 -23.08 16 20 C -0.10 -2.20 2.02 -11.46 -0.02 -2.22 16 21 H 0.11 2.11 7.95 -2.39 -0.02 2.09 16 22 C -0.10 -1.81 4.46 30.62 0.14 -1.67 16 23 C -0.12 -1.14 6.08 30.67 0.19 -0.95 16 24 C 0.10 0.80 6.39 86.36 0.55 1.35 16 25 N -0.62 -9.60 2.97 -836.90 -2.49 -12.09 16 26 C 0.70 12.72 8.57 179.06 1.53 14.25 16 27 N -0.85 -6.94 8.78 -184.74 -1.62 -8.56 16 28 O -0.64 -17.70 16.59 -4.02 -0.07 -17.77 16 29 C 0.13 2.75 5.38 86.36 0.46 3.22 16 30 H 0.00 0.22 7.88 -2.39 -0.02 0.20 16 31 H 0.04 2.57 6.47 -2.39 -0.02 2.55 16 32 H 0.00 -0.19 7.57 -2.39 -0.02 -0.20 16 33 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.05 2.06 7.90 -2.39 -0.02 2.04 16 35 H 0.03 1.66 6.54 -2.39 -0.02 1.65 16 36 H 0.07 2.55 6.98 -2.39 -0.02 2.54 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.09 1.94 7.01 -2.39 -0.02 1.93 16 41 H 0.08 1.83 7.40 -2.38 -0.02 1.81 16 42 H 0.06 1.32 8.07 -2.39 -0.02 1.30 16 43 H 0.06 1.29 8.13 -2.38 -0.02 1.27 16 44 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.11 0.09 5.64 -2.38 -0.01 0.07 16 47 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.41 0.57 6.31 -92.71 -0.59 -0.01 16 49 H 0.42 2.71 8.93 -92.71 -0.83 1.89 16 50 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.10 2.23 3.86 -2.38 -0.01 2.22 16 Total: -1.00 -79.28 386.14 0.35 -78.93 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -0.46 Total: 12.91 kcal Atomic # 6 Polarization: 28.67 SS G_CDS: 7.25 Total: 35.92 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -8.36 Total: -134.94 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.11 Total: -40.85 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -79.28 0.35 -78.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.580 kcal (2) G-P(sol) polarization free energy of solvation -79.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds