Wall clock time and date at job start Tue Mar 31 2020 21:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21534 * 120.00056 * 0.02562 * 18 17 5 20 20 C 1.48001 * 119.99610 * 180.02562 * 18 17 5 21 21 N 1.34194 * 126.69967 * 0.02677 * 20 18 17 22 22 N 1.28982 * 107.25006 * 180.02562 * 21 20 18 23 23 N 1.28721 * 108.98838 * 359.97438 * 22 21 20 24 24 C 1.46507 * 125.31839 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47238 * 359.97168 * 24 23 22 26 26 C 1.52993 * 109.47210 * 119.97546 * 24 23 22 27 27 C 1.53003 * 109.46928 * 239.97807 * 24 23 22 28 28 N 1.28866 * 109.35922 * 359.72959 * 23 22 21 29 29 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 30 30 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 32 32 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 34 34 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 35 35 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 36 36 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 37 37 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 38 38 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 39 39 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 43 43 H 1.08997 * 109.46866 * 60.00445 * 25 24 23 44 44 H 1.08992 * 109.47069 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.46973 * 300.00787 * 25 24 23 46 46 H 1.09003 * 109.47220 * 60.00252 * 26 24 23 47 47 H 1.09001 * 109.47115 * 179.97438 * 26 24 23 48 48 H 1.08997 * 109.47261 * 299.99779 * 26 24 23 49 49 H 1.09002 * 109.47174 * 59.99280 * 27 24 23 50 50 H 1.08992 * 109.47408 * 179.97438 * 27 24 23 51 51 H 1.09004 * 109.47082 * 300.00087 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 7.0755 6.8014 0.2229 13 14 9.7535 6.1491 -0.0665 14 1 10.1302 6.4056 -1.4799 15 1 10.0834 7.3397 0.7575 16 1 10.5047 4.9728 0.4404 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6985 4.0747 0.4307 20 6 2.0825 4.7706 2.6295 21 7 2.8280 4.8857 3.7393 22 7 2.1234 5.5274 4.6085 23 7 0.9803 5.8149 4.0912 24 6 -0.0969 6.5415 4.7679 25 6 0.3462 6.9060 6.1862 26 6 -0.4176 7.8191 3.9896 27 6 -1.3444 5.6582 4.8346 28 7 0.9340 5.3691 2.8830 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9290 0.8909 38 1 5.8903 2.4797 -1.0950 39 1 6.0350 2.2741 0.6671 40 1 5.4808 4.9910 0.1309 41 1 7.4056 7.7097 0.3054 42 1 4.3109 3.5669 1.9976 43 1 1.2349 7.5352 6.1388 44 1 -0.4554 7.4461 6.6898 45 1 0.5747 5.9957 6.7406 46 1 -0.7334 7.5594 2.9792 47 1 -1.2194 8.3595 4.4928 48 1 0.4711 8.4484 3.9422 49 1 -1.1159 4.7479 5.3890 50 1 -2.1458 6.1985 5.3384 51 1 -1.6602 5.3984 3.8241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717530507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:54 Heat of formation + Delta-G solvation = 84.140491 kcal Electronic energy + Delta-G solvation = -30385.339747 eV Core-core repulsion = 26357.923074 eV Total energy + Delta-G solvation = -4027.416672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.36894 -39.73238 -37.86814 -36.54501 -34.89807 -33.70347 -33.34589 -32.53774 -31.17029 -30.28416 -28.04155 -27.97986 -27.31467 -25.22692 -24.47034 -24.09228 -22.24564 -21.23078 -20.83963 -20.71761 -20.10730 -17.98155 -17.37961 -17.11368 -16.67952 -16.27200 -15.35292 -14.85331 -14.73865 -14.60499 -14.42033 -14.14251 -13.88118 -13.79167 -13.33833 -13.30996 -13.16089 -12.92493 -12.79233 -12.70750 -12.64856 -12.27464 -12.21786 -12.08662 -11.93592 -11.88561 -11.52856 -11.31114 -11.05409 -11.00958 -10.96158 -10.91090 -10.82960 -10.77685 -10.39463 -10.34059 -10.22180 -10.00950 -9.96029 -9.70009 -8.88498 -8.70076 -6.92455 -5.73753 -3.03783 1.08431 1.60898 1.63437 3.03400 3.35660 3.45915 3.50720 3.52663 3.83274 4.09873 4.17592 4.22366 4.58061 4.63390 4.87604 4.98143 4.99704 5.03391 5.08626 5.16384 5.19729 5.22634 5.23185 5.35012 5.42329 5.47898 5.50861 5.54418 5.59305 5.62473 5.67679 5.81942 5.84891 5.90365 5.96205 6.00012 6.05129 6.09792 6.17782 6.24536 6.32176 6.43934 6.49665 6.64549 6.69247 6.89644 7.69655 7.71779 8.23795 8.38170 8.43606 9.55409 10.11069 10.45989 11.48492 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.007509 B = 0.003790 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.074611 B = 7386.345735 C =10556.264081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.128 4.128 5 C 0.139 3.861 6 H 0.092 0.908 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.684 5.684 18 C 0.617 3.383 19 O -0.512 6.512 20 C 0.132 3.868 21 N -0.248 5.248 22 N -0.058 5.058 23 N -0.129 5.129 24 C 0.177 3.823 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.159 4.159 28 N -0.248 5.248 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.027 0.973 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.414 0.586 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.549 -5.409 10.205 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.167 4.167 5 C 0.035 3.965 6 H 0.110 0.890 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.207 1.207 17 N -0.336 5.336 18 C 0.396 3.604 19 O -0.385 6.385 20 C -0.153 4.153 21 N -0.123 5.123 22 N -0.051 5.051 23 N -0.044 5.044 24 C 0.097 3.903 25 C -0.211 4.211 26 C -0.220 4.220 27 C -0.217 4.217 28 N -0.102 5.102 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.251 0.749 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.109 0.891 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.870 -5.241 10.087 22.892 hybrid contribution 1.151 0.510 -0.050 1.260 sum -18.719 -4.732 10.037 21.761 Atomic orbital electron populations 1.21743 0.96303 1.00811 1.01853 1.21563 0.95590 0.97636 1.01430 1.21691 0.94817 0.95522 1.03168 1.22002 0.96042 0.96040 1.02574 1.21459 0.96510 0.92528 0.85984 0.88991 1.20978 0.88785 0.89544 0.99047 1.42351 1.05444 1.01945 1.87906 1.19202 0.83561 0.92517 1.42055 0.91083 1.24749 0.97635 0.95701 1.02659 1.69677 1.32867 0.99013 1.56250 0.86189 0.85172 0.77414 0.77385 1.21767 1.21835 1.20723 1.45711 1.14685 1.55255 1.17934 1.16038 0.82972 0.78355 0.83021 1.90824 1.51539 1.58633 1.37507 1.25419 0.88772 1.03405 0.97662 1.76205 1.23768 1.13403 0.98898 1.78885 0.92198 1.11986 1.22005 1.50703 1.12514 1.34543 1.06614 1.21462 0.83414 0.92092 0.93361 1.22103 1.03434 1.03805 0.91787 1.22265 1.03572 0.94536 1.01600 1.22246 0.95110 0.99762 1.04624 1.74943 1.22905 1.12934 0.99370 0.92735 0.93323 0.93076 0.92293 0.92581 0.92045 0.91321 0.90704 0.91660 0.94539 0.95536 0.77996 0.93550 0.74929 0.90364 0.89220 0.90532 0.90195 0.89102 0.91104 0.91364 0.89094 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.15 0.37 -1.25 16 2 C -0.12 -1.43 5.93 -26.73 -0.16 -1.59 16 3 C -0.11 -1.58 3.81 -26.73 -0.10 -1.68 16 4 C -0.13 -1.74 4.89 -26.73 -0.13 -1.87 16 5 C 0.14 2.34 2.42 -67.93 -0.16 2.18 16 6 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 7 C 0.14 2.81 5.82 -4.04 -0.02 2.78 16 8 N -0.73 -18.38 5.43 -59.91 -0.33 -18.70 16 9 C -0.24 -6.75 9.99 -15.06 -0.15 -6.91 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 13 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.68 -11.85 4.47 -54.69 -0.24 -12.09 16 18 C 0.62 11.20 6.40 -12.26 -0.08 11.12 16 19 O -0.51 -10.02 14.23 5.34 0.08 -9.95 16 20 C 0.13 2.32 8.14 -156.24 -1.27 1.05 16 21 N -0.25 -4.35 12.26 32.10 0.39 -3.96 16 22 N -0.06 -0.89 12.21 60.35 0.74 -0.15 16 23 N -0.13 -1.73 3.72 0.53 0.00 -1.73 16 24 C 0.18 1.51 1.30 -131.82 -0.17 1.34 16 25 C -0.15 -0.99 7.90 37.16 0.29 -0.70 16 26 C -0.16 -1.21 8.66 37.15 0.32 -0.88 16 27 C -0.16 -1.04 8.67 37.16 0.32 -0.72 16 28 N -0.25 -3.96 11.85 32.11 0.38 -3.58 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.95 5.65 -51.93 -0.29 0.66 16 35 H 0.07 1.03 7.84 -51.93 -0.41 0.63 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.39 10.45 7.33 -40.82 -0.30 10.15 16 41 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.41 7.29 8.35 -40.82 -0.34 6.95 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 416.88 15.07 6.28 6.28 Total: -1.00 -33.70 416.88 -6.93 -40.63 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -8.89 Total: 11.05 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.04 Total: 2.45 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: 1.67 Total: -68.04 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.70 -6.93 -40.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717530507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.768 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds