Wall clock time and date at job start Tue Mar 31 2020 21:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21534 * 120.00056 * 0.02562 * 18 17 5 20 20 C 1.48001 * 119.99610 * 180.02562 * 18 17 5 21 21 N 1.34194 * 126.69967 * 0.02677 * 20 18 17 22 22 N 1.28982 * 107.25006 * 180.02562 * 21 20 18 23 23 N 1.28721 * 108.98838 * 359.97438 * 22 21 20 24 24 C 1.46507 * 125.31839 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47238 * 359.97168 * 24 23 22 26 26 C 1.52993 * 109.47210 * 119.97546 * 24 23 22 27 27 C 1.53003 * 109.46928 * 239.97807 * 24 23 22 28 28 N 1.28866 * 109.35922 * 359.72959 * 23 22 21 29 29 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 30 30 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 32 32 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 34 34 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 35 35 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 36 36 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 37 37 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 38 38 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 39 39 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 43 43 H 1.08997 * 109.46866 * 60.00445 * 25 24 23 44 44 H 1.08992 * 109.47069 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.46973 * 300.00787 * 25 24 23 46 46 H 1.09003 * 109.47220 * 60.00252 * 26 24 23 47 47 H 1.09001 * 109.47115 * 179.97438 * 26 24 23 48 48 H 1.08997 * 109.47261 * 299.99779 * 26 24 23 49 49 H 1.09002 * 109.47174 * 59.99280 * 27 24 23 50 50 H 1.08992 * 109.47408 * 179.97438 * 27 24 23 51 51 H 1.09004 * 109.47082 * 300.00087 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 7.0755 6.8014 0.2229 13 14 9.7535 6.1491 -0.0665 14 1 10.1302 6.4056 -1.4799 15 1 10.0834 7.3397 0.7575 16 1 10.5047 4.9728 0.4404 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6985 4.0747 0.4307 20 6 2.0825 4.7706 2.6295 21 7 2.8280 4.8857 3.7393 22 7 2.1234 5.5274 4.6085 23 7 0.9803 5.8149 4.0912 24 6 -0.0969 6.5415 4.7679 25 6 0.3462 6.9060 6.1862 26 6 -0.4176 7.8191 3.9896 27 6 -1.3444 5.6582 4.8346 28 7 0.9340 5.3691 2.8830 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9290 0.8909 38 1 5.8903 2.4797 -1.0950 39 1 6.0350 2.2741 0.6671 40 1 5.4808 4.9910 0.1309 41 1 7.4056 7.7097 0.3054 42 1 4.3109 3.5669 1.9976 43 1 1.2349 7.5352 6.1388 44 1 -0.4554 7.4461 6.6898 45 1 0.5747 5.9957 6.7406 46 1 -0.7334 7.5594 2.9792 47 1 -1.2194 8.3595 4.4928 48 1 0.4711 8.4484 3.9422 49 1 -1.1159 4.7479 5.3890 50 1 -2.1458 6.1985 5.3384 51 1 -1.6602 5.3984 3.8241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717530507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:53 Heat of formation + Delta-G solvation = 60.958216 kcal Electronic energy + Delta-G solvation = -30386.345006 eV Core-core repulsion = 26357.923074 eV Total energy + Delta-G solvation = -4028.421931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.58121 -41.14349 -38.67315 -37.98075 -36.26272 -35.25578 -34.64633 -33.77415 -32.87824 -31.68784 -28.86036 -28.57911 -28.54666 -26.58084 -25.71132 -25.60279 -23.75850 -22.61088 -21.89934 -21.80970 -21.42179 -19.45227 -18.83902 -18.54317 -17.71307 -17.65686 -16.77100 -16.48959 -15.92879 -15.66358 -15.31543 -15.28054 -15.25950 -15.08238 -15.03633 -14.46282 -14.19920 -14.04121 -13.87751 -13.55888 -13.47696 -13.28614 -13.23499 -13.15858 -12.87584 -12.86595 -12.78703 -12.64846 -12.54921 -12.34156 -12.12509 -12.11746 -12.10598 -12.02553 -11.90601 -11.84774 -11.52183 -11.43670 -11.39002 -11.29721 -10.95116 -10.10790 -9.00057 -7.92904 -5.22598 -0.14606 0.28242 0.67076 1.48403 1.50169 1.58560 1.72434 1.95625 2.56991 2.84018 2.96437 3.42013 3.47647 3.55249 3.60689 3.65230 3.96472 4.04477 4.07703 4.24122 4.30407 4.30900 4.34445 4.41170 4.51160 4.55161 4.57707 4.59110 4.61015 4.70913 4.71533 4.82537 4.92169 4.93507 5.00249 5.00423 5.06669 5.09650 5.14186 5.18388 5.20597 5.21174 5.32901 5.35620 5.50774 5.52776 5.59224 6.26384 6.27324 6.87255 7.06458 7.34432 8.08336 8.31007 9.30383 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.007509 B = 0.003790 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.074611 B = 7386.345735 C =10556.264081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.118 4.118 5 C 0.147 3.853 6 H 0.071 0.929 7 C 0.145 3.855 8 N -0.745 5.745 9 C -0.241 4.241 10 H 0.082 0.918 11 C -0.076 4.076 12 N -0.971 5.971 13 Si 0.974 3.026 14 H -0.289 1.289 15 H -0.300 1.300 16 H -0.266 1.266 17 N -0.681 5.681 18 C 0.617 3.383 19 O -0.533 6.533 20 C 0.112 3.888 21 N -0.272 5.272 22 N -0.062 5.062 23 N -0.110 5.110 24 C 0.157 3.843 25 C -0.150 4.150 26 C -0.159 4.159 27 C -0.154 4.154 28 N -0.255 5.255 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.372 0.628 41 H 0.248 0.752 42 H 0.413 0.587 43 H 0.064 0.936 44 H 0.130 0.870 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.133 0.867 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.131 0.869 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.279 -6.571 11.218 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.146 4.146 4 C -0.156 4.156 5 C 0.043 3.957 6 H 0.090 0.910 7 C 0.018 3.982 8 N -0.388 5.388 9 C -0.373 4.373 10 H 0.100 0.900 11 C -0.268 4.268 12 N -0.622 5.622 13 Si 0.803 3.197 14 H -0.216 1.216 15 H -0.227 1.227 16 H -0.190 1.190 17 N -0.332 5.332 18 C 0.397 3.603 19 O -0.407 6.407 20 C -0.172 4.172 21 N -0.146 5.146 22 N -0.054 5.054 23 N -0.027 5.027 24 C 0.079 3.921 25 C -0.208 4.208 26 C -0.217 4.217 27 C -0.212 4.212 28 N -0.109 5.109 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.249 0.751 43 H 0.083 0.917 44 H 0.148 0.852 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.151 0.849 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.150 0.850 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.588 -6.465 11.105 24.269 hybrid contribution 1.244 0.887 -0.312 1.559 sum -19.344 -5.578 10.793 22.843 Atomic orbital electron populations 1.21741 0.95950 1.01829 1.01171 1.21534 0.95925 0.95826 1.02483 1.21585 0.94820 0.96924 1.01292 1.21949 0.95860 0.93664 1.04159 1.21389 0.94771 0.94403 0.85122 0.91048 1.21157 0.90319 0.86846 0.99848 1.42557 1.04558 1.03836 1.87874 1.19661 0.84950 0.92752 1.39895 0.89964 1.25577 1.01885 0.95749 1.03611 1.69855 1.34748 0.99048 1.58518 0.85130 0.80277 0.77228 0.77052 1.21585 1.22660 1.19017 1.45699 1.14409 1.55121 1.17931 1.16118 0.82926 0.78122 0.83120 1.90799 1.52103 1.59531 1.38281 1.25317 0.89544 1.04576 0.97713 1.76154 1.24706 1.14504 0.99193 1.78792 0.92857 1.12026 1.21707 1.51354 1.12679 1.32892 1.05742 1.22253 0.83031 0.92568 0.94252 1.22179 1.04379 1.03791 0.90417 1.22321 1.04254 0.93976 1.01156 1.22292 0.94971 0.99790 1.04174 1.74901 1.22430 1.13000 1.00595 0.93215 0.91415 0.94031 0.90904 0.91738 0.94143 0.93081 0.88671 0.90336 0.93359 0.94065 0.79607 0.94314 0.75100 0.91726 0.85160 0.90973 0.91839 0.84889 0.92608 0.91766 0.85038 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.12 -2.56 5.93 30.59 0.18 -2.37 16 3 C -0.11 -2.95 3.81 30.59 0.12 -2.84 16 4 C -0.12 -3.06 4.89 30.59 0.15 -2.91 16 5 C 0.15 4.96 2.42 44.99 0.11 5.07 16 6 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 7 C 0.14 5.52 5.82 86.38 0.50 6.02 16 8 N -0.75 -37.76 5.43 -343.46 -1.87 -39.63 16 9 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 10 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 11 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 12 N -0.97 -61.08 13.06 21.65 0.28 -60.80 16 13 Si 0.97 46.74 29.55 68.60 2.03 48.76 16 14 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 15 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 N -0.68 -24.32 4.47 -445.24 -1.99 -26.31 16 18 C 0.62 23.44 6.40 86.83 0.56 24.00 16 19 O -0.53 -21.83 14.23 -3.82 -0.05 -21.88 16 20 C 0.11 4.13 8.14 137.15 1.12 5.24 16 21 N -0.27 -9.88 12.26 -52.37 -0.64 -10.52 16 22 N -0.06 -1.93 12.21 37.02 0.45 -1.48 16 23 N -0.11 -2.97 3.72 -152.25 -0.57 -3.54 16 24 C 0.16 2.48 1.30 3.60 0.00 2.48 16 25 C -0.15 -1.65 7.90 71.98 0.57 -1.08 16 26 C -0.16 -2.16 8.66 71.98 0.62 -1.54 16 27 C -0.15 -1.72 8.67 71.98 0.62 -1.10 16 28 N -0.26 -8.41 11.85 -52.32 -0.62 -9.03 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 1.27 5.65 -2.39 -0.01 1.26 16 35 H 0.05 1.56 7.84 -2.39 -0.02 1.54 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.37 20.76 7.33 -92.71 -0.68 20.08 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.41 14.99 8.35 -92.71 -0.77 14.22 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 49 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -75.22 416.88 3.07 -72.15 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.53 Total: 40.13 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 6.57 Total: 12.14 kcal Atomic # 7 Polarization: -146.35 SS G_CDS: -4.95 Total: -151.30 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -75.22 3.07 -72.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717530507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.107 kcal (2) G-P(sol) polarization free energy of solvation -75.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds