Wall clock time and date at job start Tue Mar 31 2020 21:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99423 * 2 1 4 4 H 1.48504 * 109.47548 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47210 * 120.00319 * 3 2 1 6 6 H 1.48504 * 109.47054 * 240.00027 * 3 2 1 7 7 C 1.38803 * 120.00575 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00358 * 217.09835 * 7 2 1 9 9 N 1.36936 * 120.00280 * 37.08568 * 7 2 1 10 10 C 1.46501 * 119.99632 * 29.43502 * 9 7 2 11 11 C 1.53006 * 109.47302 * 85.45687 * 10 9 7 12 12 C 1.52996 * 117.49879 * 243.62458 * 11 10 9 13 13 C 1.52999 * 60.00092 * 252.50914 * 12 11 10 14 14 C 1.46498 * 120.00665 * 209.43276 * 9 7 2 15 15 C 1.53046 * 109.45758 * 60.06807 * 14 9 7 16 16 C 1.53186 * 109.30918 * 178.61696 * 15 14 9 17 17 N 1.46923 * 108.77842 * 54.63752 * 16 15 14 18 18 C 1.34785 * 120.63174 * 126.41027 * 17 16 15 19 19 O 1.21274 * 119.99732 * 5.47167 * 18 17 16 20 20 C 1.50698 * 119.99609 * 185.46963 * 18 17 16 21 21 H 1.08991 * 110.02173 * 53.18831 * 20 18 17 22 22 C 1.54269 * 110.03296 * 291.74202 * 20 18 17 23 23 C 1.54898 * 104.19646 * 217.10874 * 22 20 18 24 24 C 1.54888 * 102.74732 * 37.94371 * 23 22 20 25 25 H 1.08997 * 110.48973 * 203.37954 * 24 23 22 26 26 F 1.39899 * 110.48801 * 80.73244 * 24 23 22 27 27 C 1.53883 * 110.02928 * 174.58046 * 20 18 17 28 28 C 1.46926 * 118.73933 * 306.38761 * 17 16 15 29 29 C 1.53043 * 109.45760 * 300.00292 * 14 9 7 30 30 H 0.97006 * 119.99128 * 185.84635 * 1 2 3 31 31 H 1.09001 * 109.47276 * 205.45793 * 10 9 7 32 32 H 1.09000 * 109.47094 * 325.45573 * 10 9 7 33 33 H 1.09000 * 115.54629 * 29.32790 * 11 10 9 34 34 H 1.09000 * 117.50187 * 359.97438 * 12 11 10 35 35 H 1.09000 * 117.50136 * 145.01956 * 12 11 10 36 36 H 1.09000 * 117.50004 * 252.51668 * 13 12 11 37 37 H 1.09000 * 117.50197 * 107.49008 * 13 12 11 38 38 H 1.08998 * 109.46036 * 180.02562 * 14 9 7 39 39 H 1.09001 * 109.49583 * 298.56585 * 15 14 9 40 40 H 1.08996 * 109.49429 * 58.66768 * 15 14 9 41 41 H 1.09003 * 109.59091 * 294.84709 * 16 15 14 42 42 H 1.08999 * 109.70614 * 174.49550 * 16 15 14 43 43 H 1.09000 * 110.48736 * 335.78482 * 22 20 18 44 44 H 1.08997 * 110.48713 * 98.43128 * 22 20 18 45 45 H 1.09001 * 110.75434 * 279.63254 * 23 22 20 46 46 H 1.08999 * 110.75592 * 156.25910 * 23 22 20 47 47 H 1.09003 * 110.03029 * 238.57114 * 27 20 18 48 48 H 1.09001 * 110.03121 * 359.94692 * 27 20 18 49 49 H 1.08999 * 109.58720 * 293.82574 * 28 17 16 50 50 H 1.09001 * 109.70594 * 173.46361 * 28 17 16 51 51 H 1.08993 * 109.49851 * 301.33681 * 29 14 9 52 52 H 1.09002 * 109.49800 * 61.43678 * 29 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7466 0.0006 5 1 3.1039 1.6966 1.2125 6 1 3.1038 1.6966 -1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 2.9265 -1.2969 0.5636 9 7 1.5336 -2.2677 -0.7161 10 6 0.7439 -2.0411 -1.9291 11 6 1.6835 -1.8603 -3.1230 12 6 1.6712 -0.5050 -3.8328 13 6 1.0479 -1.7280 -4.5085 14 6 1.8131 -3.6345 -0.2688 15 6 1.2321 -3.8414 1.1318 16 6 1.4960 -5.2816 1.5820 17 7 2.9365 -5.5525 1.4803 18 6 3.6232 -6.0237 2.5400 19 8 3.0366 -6.3220 3.5587 20 6 5.1199 -6.1800 2.4589 21 1 5.5763 -5.2425 2.1414 22 6 5.4807 -7.3066 1.4688 23 6 6.7071 -7.9999 2.1127 24 6 6.3628 -7.9703 3.6225 25 1 7.2704 -8.0382 4.2222 26 9 5.4829 -9.0093 3.9444 27 6 5.6807 -6.6021 3.8283 28 6 3.6141 -5.3004 0.2012 29 6 3.3264 -3.8599 -0.2336 30 1 -0.4849 -0.8358 0.0856 31 1 0.0938 -2.8982 -2.1049 32 1 0.1370 -1.1442 -1.8052 33 1 2.6368 -2.3843 -3.0545 34 1 0.9934 0.2578 -3.4494 35 1 2.6166 -0.1369 -4.2313 36 1 1.5834 -2.1647 -5.3515 37 1 -0.0396 -1.7698 -4.5694 38 1 1.3563 -4.3432 -0.9596 39 1 1.7063 -3.1498 1.8282 40 1 0.1579 -3.6579 1.1108 41 1 0.9483 -5.9715 0.9400 42 1 1.1724 -5.4089 2.6151 43 1 4.6528 -8.0089 1.3718 44 1 5.7447 -6.8901 0.4967 45 1 7.6184 -7.4360 1.9132 46 1 6.8011 -9.0262 1.7579 47 1 6.4098 -5.8697 4.1750 48 1 4.8704 -6.6929 4.5517 49 1 3.2390 -5.9916 -0.5535 50 1 4.6887 -5.4381 0.3212 51 1 3.7428 -3.6894 -1.2263 52 1 3.7809 -3.1682 0.4757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723649364.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:49 Heat of formation + Delta-G solvation = -64.006720 kcal Electronic energy + Delta-G solvation = -31129.506217 eV Core-core repulsion = 27043.452687 eV Total energy + Delta-G solvation = -4086.053530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.54668 -41.54059 -39.47372 -38.20014 -37.55532 -36.31114 -33.91716 -32.34816 -31.52941 -30.01926 -29.42998 -27.91512 -26.32547 -24.19572 -24.10924 -23.12554 -22.49682 -21.76290 -21.22595 -21.13202 -19.91740 -18.98080 -18.38710 -17.44635 -17.11256 -16.81599 -16.72179 -16.27404 -15.96922 -15.76131 -15.49346 -15.37078 -15.22252 -15.14203 -14.58881 -14.53406 -14.40154 -14.03018 -13.83072 -13.46765 -13.36218 -13.06480 -12.77937 -12.62892 -12.52988 -12.47942 -12.38297 -12.30736 -12.24196 -12.12539 -11.95424 -11.89407 -11.76835 -11.58217 -11.54373 -11.45505 -11.34378 -10.99365 -10.74960 -10.56990 -10.22675 -9.67852 -8.78544 -8.14621 -5.25412 1.56106 1.57148 1.62446 1.80337 1.98151 2.67504 3.02631 3.21880 3.26140 3.36505 3.50922 3.58920 3.83635 3.88325 4.02284 4.06446 4.10901 4.17998 4.20477 4.21590 4.28295 4.36150 4.38426 4.39161 4.42397 4.48319 4.60849 4.63599 4.71450 4.71915 4.77826 4.81950 4.82158 4.92002 4.96483 4.99432 5.02679 5.11535 5.13726 5.14340 5.23585 5.24191 5.34576 5.35551 5.41998 5.51329 5.61494 5.64811 6.04406 6.41221 6.47485 7.12367 7.18794 7.91689 8.33963 9.02465 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015928 B = 0.002944 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.540399 B = 9507.850435 C = 9989.626592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.056 4.056 3 Si 1.078 2.922 4 H -0.299 1.299 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.334 4.334 8 H 0.039 0.961 9 N -0.594 5.594 10 C 0.166 3.834 11 C -0.152 4.152 12 C -0.188 4.188 13 C -0.165 4.165 14 C 0.172 3.828 15 C -0.121 4.121 16 C 0.122 3.878 17 N -0.605 5.605 18 C 0.510 3.490 19 O -0.590 6.590 20 C -0.110 4.110 21 H 0.121 0.879 22 C -0.114 4.114 23 C -0.137 4.137 24 C 0.074 3.926 25 H 0.117 0.883 26 F -0.234 7.234 27 C -0.149 4.149 28 C 0.111 3.889 29 C -0.128 4.128 30 H 0.253 0.747 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.114 0.886 51 H 0.078 0.922 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.724 -14.975 -3.636 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.255 4.255 3 Si 0.906 3.094 4 H -0.225 1.225 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.464 4.464 8 H 0.056 0.944 9 N -0.315 5.315 10 C 0.040 3.960 11 C -0.173 4.173 12 C -0.226 4.226 13 C -0.202 4.202 14 C 0.066 3.934 15 C -0.161 4.161 16 C -0.001 4.001 17 N -0.337 5.337 18 C 0.300 3.700 19 O -0.471 6.471 20 C -0.131 4.131 21 H 0.139 0.861 22 C -0.152 4.152 23 C -0.174 4.174 24 C 0.038 3.962 25 H 0.135 0.865 26 F -0.215 7.215 27 C -0.187 4.187 28 C -0.011 4.011 29 C -0.168 4.168 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.129 0.871 45 H 0.138 0.862 46 H 0.107 0.893 47 H 0.127 0.873 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.132 0.868 51 H 0.097 0.903 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.210 -13.495 -3.170 19.851 hybrid contribution -0.726 -0.981 0.709 1.411 sum 13.484 -14.476 -2.461 19.935 Atomic orbital electron populations 1.70912 1.08045 1.28918 1.48105 1.26386 0.95797 1.03754 0.99602 0.83355 0.74718 0.74241 0.77111 1.22543 1.21157 1.20536 1.19579 1.04217 0.92729 1.29830 0.94365 1.44153 1.62581 1.01059 1.23666 1.20496 0.92182 0.99028 0.84276 1.22924 1.01285 0.99938 0.93122 1.22826 1.02328 0.91903 1.05508 1.22960 1.00160 1.01407 0.95719 1.20539 0.94323 0.86087 0.92441 1.22120 0.99821 0.94786 0.99359 1.21473 0.81222 0.95731 1.01687 1.48182 1.09209 1.63585 1.12676 1.21272 0.91365 0.75420 0.81928 1.90628 1.71909 1.52289 1.32301 1.22031 0.89675 1.02884 0.98522 0.86071 1.22523 0.98385 0.95484 0.98766 1.23140 0.99298 1.03043 0.91952 1.22701 0.91272 0.83181 0.99045 0.86507 1.92780 1.72892 1.61537 1.94307 1.22841 1.01556 0.97609 0.96665 1.22120 0.99176 0.96013 0.83819 1.22176 0.97417 0.95682 1.01495 0.93775 0.94194 0.93882 0.88616 0.91643 0.88760 0.86989 0.89359 0.91674 0.94985 0.93506 0.90070 0.91647 0.92607 0.87150 0.86246 0.89342 0.87285 0.91622 0.89251 0.86769 0.90317 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.90 12.14 21.65 0.26 -53.64 16 2 C -0.06 -3.05 4.63 84.86 0.39 -2.66 16 3 Si 1.08 50.31 30.04 68.60 2.06 52.37 16 4 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.33 -17.26 8.09 84.03 0.68 -16.58 16 8 H 0.04 2.07 6.96 -2.91 -0.02 2.05 16 9 N -0.59 -26.52 2.28 -677.87 -1.54 -28.07 16 10 C 0.17 7.13 5.35 86.38 0.46 7.60 16 11 C -0.15 -5.52 5.99 -10.79 -0.06 -5.58 16 12 C -0.19 -6.70 10.18 30.59 0.31 -6.39 16 13 C -0.16 -4.85 10.25 30.59 0.31 -4.54 16 14 C 0.17 6.26 2.59 45.02 0.12 6.37 16 15 C -0.12 -4.63 5.31 30.67 0.16 -4.47 16 16 C 0.12 3.93 6.42 86.36 0.55 4.49 16 17 N -0.60 -17.15 2.97 -818.91 -2.43 -19.58 16 18 C 0.51 15.32 6.89 87.65 0.60 15.93 16 19 O -0.59 -23.02 14.66 -3.01 -0.04 -23.07 16 20 C -0.11 -2.20 2.39 -10.81 -0.03 -2.23 16 21 H 0.12 1.98 7.61 -2.39 -0.02 1.97 16 22 C -0.11 -1.64 5.29 31.67 0.17 -1.47 16 23 C -0.14 -1.48 6.70 31.89 0.21 -1.27 16 24 C 0.07 1.20 4.66 31.67 0.15 1.35 16 25 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 26 F -0.23 -5.92 17.17 44.97 0.77 -5.14 16 27 C -0.15 -2.97 6.20 31.32 0.19 -2.77 16 28 C 0.11 2.41 5.84 86.36 0.50 2.91 16 29 C -0.13 -3.82 5.30 30.67 0.16 -3.65 16 30 H 0.25 15.17 7.77 -92.70 -0.72 14.45 16 31 H 0.04 1.59 7.83 -2.39 -0.02 1.57 16 32 H 0.04 2.20 5.18 -2.39 -0.01 2.18 16 33 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.06 2.67 8.03 -2.39 -0.02 2.65 16 35 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 2.16 7.73 -2.39 -0.02 2.14 16 39 H 0.03 1.45 7.71 -2.39 -0.02 1.43 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 2.36 7.04 -2.39 -0.02 2.34 16 43 H 0.06 1.04 7.85 -2.39 -0.02 1.02 16 44 H 0.11 0.97 6.74 -2.39 -0.02 0.96 16 45 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 47 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 1.86 6.38 -2.39 -0.02 1.85 16 49 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.11 1.77 4.26 -2.39 -0.01 1.76 16 51 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.04 1.50 7.02 -2.39 -0.02 1.48 16 Total: -1.00 -70.77 398.49 4.92 -65.85 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.95 Total: 24.24 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.90 Total: -12.97 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -3.71 Total: -101.28 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.04 Total: -23.07 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.77 Total: -5.14 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.06 Total: 52.37 kcal Total: -70.77 4.92 -65.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723649364.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.843 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds