Wall clock time and date at job start Tue Mar 31 2020 21:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48500 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46794 * 299.99702 * 3 2 1 6 6 H 1.48495 * 109.47620 * 59.99332 * 3 2 1 7 7 C 1.38816 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99968 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99832 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99710 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46754 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47127 * 64.99996 * 11 10 9 13 13 N 1.46500 * 109.47205 * 304.99998 * 11 10 9 14 14 C 1.34776 * 119.99897 * 115.20135 * 13 11 10 15 15 O 1.21275 * 120.00274 * 5.31137 * 14 13 11 16 16 C 1.50703 * 119.99777 * 185.30595 * 14 13 11 17 17 O 1.42896 * 109.46989 * 179.97438 * 16 14 13 18 18 C 1.42907 * 114.00272 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47132 * 180.02562 * 18 17 16 20 20 C 1.54270 * 110.03146 * 292.90766 * 19 18 17 21 21 C 1.54974 * 104.15765 * 217.13710 * 20 19 18 22 22 C 1.54887 * 102.77651 * 37.89490 * 21 20 19 23 23 C 1.53878 * 110.03090 * 175.69344 * 19 18 17 24 24 C 1.53004 * 109.47005 * 185.00132 * 11 10 9 25 25 C 1.54263 * 110.03050 * 300.41735 * 24 11 10 26 26 C 1.54897 * 104.19390 * 217.10446 * 25 24 11 27 27 C 1.54892 * 102.74627 * 37.94293 * 26 25 24 28 28 C 1.53874 * 110.02904 * 183.24874 * 24 11 10 29 29 H 0.96999 * 120.00265 * 0.02562 * 1 2 3 30 30 H 0.97006 * 119.99831 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47720 * 299.99772 * 10 9 7 32 32 H 1.08996 * 109.47176 * 60.00162 * 10 9 7 33 33 H 0.97008 * 119.99979 * 295.20416 * 13 11 10 34 34 H 1.08994 * 109.47429 * 300.00399 * 16 14 13 35 35 H 1.09005 * 109.47300 * 60.00339 * 16 14 13 36 36 H 1.09002 * 109.47131 * 300.00764 * 18 17 16 37 37 H 1.09006 * 109.46383 * 60.00411 * 18 17 16 38 38 H 1.08997 * 110.02122 * 54.30687 * 19 18 17 39 39 H 1.08998 * 110.48914 * 335.78943 * 20 19 18 40 40 H 1.09000 * 110.48487 * 98.43501 * 20 19 18 41 41 H 1.08998 * 110.72050 * 279.57169 * 21 20 19 42 42 H 1.09005 * 110.91554 * 156.29825 * 21 20 19 43 43 H 1.09003 * 110.48402 * 203.40583 * 22 21 20 44 44 H 1.08995 * 110.60444 * 80.81533 * 22 21 20 45 45 H 1.08998 * 110.03467 * 238.57203 * 23 19 18 46 46 H 1.09009 * 110.03112 * 0.02562 * 23 19 18 47 47 H 1.08999 * 110.01473 * 61.86056 * 24 11 10 48 48 H 1.08996 * 110.48737 * 335.77782 * 25 24 11 49 49 H 1.08997 * 110.48784 * 98.43213 * 25 24 11 50 50 H 1.08996 * 110.75615 * 279.62813 * 26 25 24 51 51 H 1.08998 * 110.91254 * 156.32746 * 26 25 24 52 52 H 1.09001 * 110.48280 * 203.38073 * 27 26 25 53 53 H 1.09002 * 110.60371 * 80.79238 * 27 26 25 54 54 H 1.09005 * 110.02914 * 238.56269 * 28 24 11 55 55 H 1.08993 * 110.03882 * 359.97438 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2123 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4982 -4.8134 -0.9317 13 7 0.1441 -4.6764 1.1310 14 6 -1.1686 -4.4660 0.9095 15 8 -1.6043 -4.4913 -0.2220 16 6 -2.0950 -4.1995 2.0679 17 8 -3.4247 -4.0094 1.5804 18 6 -4.3874 -3.7492 2.6040 19 6 -5.7677 -3.5639 1.9706 20 6 -5.7917 -2.2747 1.1236 21 6 -7.2110 -1.6964 1.3536 22 6 -7.4662 -2.0003 2.8508 23 6 -6.8322 -3.3898 3.0681 24 6 1.8249 -6.1412 0.1257 25 6 2.8057 -6.3005 -1.0543 26 6 2.7583 -7.8128 -1.3861 27 6 1.2629 -8.1608 -1.1816 28 6 0.8439 -7.3239 0.0448 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6849 -3.7145 -0.8894 32 1 2.6849 -3.7144 0.8905 33 1 0.4798 -4.7328 2.0394 34 1 -2.0759 -5.0485 2.7512 35 1 -1.7697 -3.3021 2.5943 36 1 -4.4162 -4.5893 3.2979 37 1 -4.1095 -2.8428 3.1421 38 1 -6.0111 -4.4246 1.3477 39 1 -5.0332 -1.5743 1.4732 40 1 -5.6402 -2.5079 0.0697 41 1 -7.9416 -2.2063 0.7258 42 1 -7.2281 -0.6222 1.1691 43 1 -8.5362 -2.0329 3.0564 44 1 -6.9800 -1.2562 3.4815 45 1 -7.5925 -4.1656 2.9773 46 1 -6.3652 -3.4370 4.0520 47 1 2.3680 -6.1705 1.0702 48 1 2.4729 -5.7119 -1.9092 49 1 3.8121 -6.0069 -0.7562 50 1 3.3844 -8.3793 -0.6968 51 1 3.0595 -7.9945 -2.4177 52 1 1.1434 -9.2246 -0.9762 53 1 0.6792 -7.8742 -2.0564 54 1 0.9117 -7.9278 0.9497 55 1 -0.1742 -6.9565 -0.0836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724085789.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:25 Heat of formation + Delta-G solvation = -125.442917 kcal Electronic energy + Delta-G solvation = -30557.678528 eV Core-core repulsion = 26592.421229 eV Total energy + Delta-G solvation = -3965.257299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.15799 -39.81736 -39.10903 -37.75298 -36.80278 -35.24001 -33.14579 -31.71663 -31.08229 -29.62488 -29.54172 -28.53075 -27.62815 -25.29139 -24.96633 -22.95966 -21.78871 -21.56636 -21.27785 -20.79381 -20.45607 -19.22704 -18.29039 -17.80961 -17.28920 -17.15262 -16.74196 -16.43972 -16.26157 -16.02048 -15.89349 -15.46464 -15.15704 -15.02412 -14.91507 -14.28186 -14.22669 -14.09574 -13.94159 -13.68273 -13.35747 -13.00968 -12.89296 -12.79612 -12.63617 -12.23418 -12.15647 -12.10014 -11.99105 -11.93327 -11.92312 -11.88596 -11.82369 -11.71340 -11.65039 -11.51367 -11.43779 -11.33415 -11.32179 -11.01282 -10.73412 -10.63118 -9.92983 -9.00508 -7.93876 -5.24429 1.44251 1.46158 1.56119 1.63833 1.93780 2.54305 2.99585 3.38902 3.55437 3.68101 3.70962 3.72900 3.79648 3.85749 3.91266 4.13984 4.16387 4.23898 4.27179 4.36514 4.39026 4.41142 4.49977 4.55672 4.59361 4.61701 4.67011 4.73318 4.74920 4.75724 4.84154 4.84304 4.88354 4.88609 4.93520 5.05455 5.05635 5.08055 5.11371 5.17766 5.23372 5.28902 5.33959 5.34443 5.45744 5.47188 5.47619 5.49558 5.53195 5.65314 6.13290 6.25420 6.63961 7.31385 7.34971 8.08896 8.31455 9.29033 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006688 B = 0.003687 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4185.796059 B = 7591.878780 C =11264.943553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.744 5.744 10 C 0.141 3.859 11 C 0.151 3.849 12 H 0.061 0.939 13 N -0.700 5.700 14 C 0.512 3.488 15 O -0.575 6.575 16 C 0.050 3.950 17 O -0.395 6.395 18 C 0.063 3.937 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.086 4.086 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.113 4.113 29 H 0.248 0.752 30 H 0.371 0.629 31 H 0.030 0.970 32 H 0.038 0.962 33 H 0.413 0.587 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.049 0.951 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.070 0.930 52 H 0.079 0.921 53 H 0.047 0.953 54 H 0.081 0.919 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 -16.358 9.738 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.387 5.387 10 C 0.013 3.987 11 C 0.046 3.954 12 H 0.079 0.921 13 N -0.352 5.352 14 C 0.299 3.701 15 O -0.454 6.454 16 C -0.029 4.029 17 O -0.314 6.314 18 C -0.013 4.013 19 C -0.109 4.109 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.147 4.147 24 C -0.106 4.106 25 C -0.158 4.158 26 C -0.153 4.153 27 C -0.163 4.163 28 C -0.151 4.151 29 H 0.057 0.943 30 H 0.203 0.797 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.249 0.751 34 H 0.135 0.865 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.115 0.885 48 H 0.067 0.933 49 H 0.098 0.902 50 H 0.102 0.898 51 H 0.089 0.911 52 H 0.098 0.902 53 H 0.066 0.934 54 H 0.100 0.900 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.164 -16.277 8.748 19.480 hybrid contribution 0.204 1.527 0.073 1.543 sum -5.960 -14.750 8.821 18.190 Atomic orbital electron populations 1.69894 1.06809 1.25751 1.59519 1.25611 0.96270 1.01222 1.03793 0.85065 0.78360 0.79742 0.76531 1.18628 1.22548 1.21871 1.19701 0.91534 0.85245 1.41054 0.90275 1.42568 1.05599 1.01199 1.89321 1.21255 0.93793 0.84812 0.98792 1.21232 0.89741 0.94717 0.89691 0.92114 1.45534 1.06216 1.72857 1.10592 1.20765 0.83565 0.75322 0.90439 1.90682 1.76940 1.51750 1.26040 1.22239 0.83150 1.03460 0.94064 1.87995 1.16238 1.92617 1.34518 1.22937 0.88050 1.00378 0.89940 1.21788 0.93226 0.98216 0.97671 1.22382 0.97764 0.96753 0.99130 1.22540 0.95538 1.00591 0.97568 1.22367 1.01421 0.96710 0.95402 1.22118 0.96818 0.98025 0.97742 1.22031 0.95977 0.91821 1.00764 1.22425 0.99155 0.97332 0.96936 1.22466 0.96010 0.94814 1.01970 1.22369 0.96598 1.00040 0.97330 1.22117 0.97780 0.95895 0.99302 0.94291 0.79731 0.95196 0.94463 0.75082 0.86503 0.89947 0.90651 0.93117 0.90971 0.93435 0.93837 0.90866 0.91741 0.89852 0.91690 0.89945 0.90324 0.88518 0.93256 0.90239 0.89757 0.91145 0.90238 0.93440 0.90022 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.44 13.06 21.65 0.28 -62.16 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.97 47.40 29.55 68.60 2.03 49.42 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 7 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.74 -39.52 5.43 -343.46 -1.87 -41.39 16 10 C 0.14 5.64 5.62 86.38 0.49 6.13 16 11 C 0.15 5.15 1.70 44.99 0.08 5.23 16 12 H 0.06 2.59 6.91 -2.39 -0.02 2.57 16 13 N -0.70 -22.21 4.00 -442.52 -1.77 -23.98 16 14 C 0.51 19.41 7.14 87.66 0.63 20.03 16 15 O -0.58 -28.14 15.84 16.02 0.25 -27.88 16 16 C 0.05 1.51 6.42 71.24 0.46 1.97 16 17 O -0.39 -13.70 9.71 -129.94 -1.26 -14.96 16 18 C 0.06 1.58 4.98 71.98 0.36 1.93 16 19 C -0.09 -2.16 3.19 -10.07 -0.03 -2.19 16 20 C -0.12 -3.49 6.22 31.70 0.20 -3.29 16 21 C -0.12 -2.68 6.91 31.91 0.22 -2.46 16 22 C -0.12 -2.06 6.83 31.67 0.22 -1.85 16 23 C -0.11 -1.83 6.46 31.32 0.20 -1.62 16 24 C -0.09 -2.09 2.71 -10.07 -0.03 -2.12 16 25 C -0.12 -2.78 5.34 31.67 0.17 -2.61 16 26 C -0.12 -2.12 6.91 31.89 0.22 -1.90 16 27 C -0.13 -2.59 6.83 31.67 0.22 -2.38 16 28 C -0.11 -2.59 6.23 31.32 0.20 -2.39 16 29 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.37 21.87 6.80 -92.70 -0.63 21.24 16 31 H 0.03 1.22 7.23 -2.39 -0.02 1.20 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.41 10.11 8.83 -92.70 -0.82 9.29 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.26 8.02 -2.38 -0.02 1.24 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 1.54 7.77 -2.39 -0.02 1.52 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.08 1.11 7.67 -2.38 -0.02 1.09 16 47 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.05 1.36 7.58 -2.39 -0.02 1.34 16 49 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 55 H 0.04 1.13 7.33 -2.39 -0.02 1.11 16 Total: -1.00 -79.75 428.73 1.95 -77.79 By element: Atomic # 1 Polarization: 48.50 SS G_CDS: -0.60 Total: 47.90 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 4.89 Total: -4.75 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -3.35 Total: -127.53 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -1.01 Total: -42.84 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -79.75 1.95 -77.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724085789.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.649 kcal (2) G-P(sol) polarization free energy of solvation -79.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds