Wall clock time and date at job start Tue Mar 31 2020 21:48:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86794 * 120.00499 * 2 1
4 4 H 1.48496 * 109.47495 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47216 * 299.99867 * 3 2 1
6 6 H 1.48501 * 109.47105 * 60.00123 * 3 2 1
7 7 C 1.38816 * 119.99339 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99453 * 180.02562 * 7 2 1
9 9 N 1.36938 * 120.00141 * 359.97438 * 7 2 1
10 10 C 1.46499 * 119.99651 * 179.97438 * 9 7 2
11 11 C 1.53004 * 109.46862 * 179.97438 * 10 9 7
12 12 H 1.09002 * 109.47156 * 295.00301 * 11 10 9
13 13 N 1.46496 * 109.46938 * 55.00584 * 11 10 9
14 14 C 1.34780 * 119.99773 * 244.80209 * 13 11 10
15 15 O 1.21290 * 119.99695 * 355.04127 * 14 13 11
16 16 C 1.50700 * 120.00031 * 174.76709 * 14 13 11
17 17 O 1.42903 * 109.46790 * 180.27434 * 16 14 13
18 18 C 1.42904 * 113.99630 * 180.02562 * 17 16 14
19 19 C 1.52998 * 109.47015 * 180.02562 * 18 17 16
20 20 C 1.54277 * 110.02938 * 292.90184 * 19 18 17
21 21 C 1.54956 * 104.16107 * 217.13867 * 20 19 18
22 22 C 1.54888 * 102.78080 * 37.88728 * 21 20 19
23 23 C 1.53881 * 110.03417 * 175.68957 * 19 18 17
24 24 C 1.53005 * 109.46829 * 175.00341 * 11 10 9
25 25 C 1.54268 * 110.03346 * 297.06573 * 24 11 10
26 26 C 1.54966 * 104.15892 * 217.14065 * 25 24 11
27 27 C 1.54884 * 102.77946 * 37.89001 * 26 25 24
28 28 C 1.53879 * 110.02912 * 179.84931 * 24 11 10
29 29 H 0.97001 * 119.99339 * 0.02562 * 1 2 3
30 30 H 0.96989 * 120.00233 * 0.02562 * 9 7 2
31 31 H 1.09005 * 109.47273 * 60.00449 * 10 9 7
32 32 H 1.09002 * 109.47457 * 300.00020 * 10 9 7
33 33 H 0.96994 * 120.00384 * 64.80179 * 13 11 10
34 34 H 1.08993 * 109.46904 * 300.27448 * 16 14 13
35 35 H 1.08994 * 109.47106 * 60.27481 * 16 14 13
36 36 H 1.09001 * 109.47013 * 299.99800 * 18 17 16
37 37 H 1.09001 * 109.47506 * 59.99655 * 18 17 16
38 38 H 1.08996 * 110.02088 * 54.28965 * 19 18 17
39 39 H 1.09001 * 110.48272 * 335.78622 * 20 19 18
40 40 H 1.09001 * 110.47750 * 98.42875 * 20 19 18
41 41 H 1.09005 * 110.72415 * 279.57662 * 21 20 19
42 42 H 1.08995 * 110.92688 * 156.29558 * 21 20 19
43 43 H 1.08991 * 110.49400 * 203.40403 * 22 21 20
44 44 H 1.09003 * 110.59678 * 80.81561 * 22 21 20
45 45 H 1.08993 * 110.03099 * 238.56737 * 23 19 18
46 46 H 1.09002 * 110.02731 * 359.95124 * 23 19 18
47 47 H 1.08994 * 110.02045 * 58.46024 * 24 11 10
48 48 H 1.09009 * 110.48252 * 335.78575 * 25 24 11
49 49 H 1.09000 * 110.48723 * 98.42696 * 25 24 11
50 50 H 1.08995 * 110.72014 * 279.57350 * 26 25 24
51 51 H 1.08998 * 110.91912 * 156.29475 * 26 25 24
52 52 H 1.08999 * 110.48894 * 203.40840 * 27 26 25
53 53 H 1.08997 * 110.60635 * 80.81241 * 27 26 25
54 54 H 1.08994 * 110.03117 * 238.56492 * 28 24 11
55 55 H 1.08998 * 110.02960 * 359.95182 * 28 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8917 2.3964 -1.2125
6 1 1.8917 2.3963 1.2125
7 6 2.0101 -1.2023 -0.0005
8 1 3.0902 -1.2023 -0.0001
9 7 1.3253 -2.3881 -0.0005
10 6 2.0578 -3.6569 -0.0017
11 6 1.0635 -4.8197 -0.0008
12 1 0.4983 -4.8138 0.9313
13 7 0.1428 -4.6758 -1.1312
14 6 -1.1697 -4.4653 -0.9087
15 8 -1.6035 -4.4846 0.2239
16 6 -2.0972 -4.1998 -2.0664
17 8 -3.4255 -4.0036 -1.5773
18 6 -4.3890 -3.7439 -2.6002
19 6 -5.7675 -3.5505 -1.9651
20 6 -6.2548 -4.8769 -1.3460
21 6 -7.7787 -4.8888 -1.6263
22 6 -7.8714 -4.2689 -3.0427
23 6 -6.7951 -3.1637 -3.0432
24 6 1.8241 -6.1412 -0.1276
25 6 2.5704 -6.1941 -1.4767
26 6 2.4497 -7.6744 -1.9190
27 6 1.0150 -8.0495 -1.4721
28 6 0.8358 -7.3207 -0.1242
29 1 -0.4849 0.8401 -0.0004
30 1 0.3555 -2.3881 -0.0005
31 1 2.6851 -3.7151 0.8879
32 1 2.6838 -3.7143 -0.8922
33 1 0.4777 -4.7320 -2.0397
34 1 -1.7695 -3.3058 -2.5967
35 1 -2.0825 -5.0515 -2.7464
36 1 -4.1091 -2.8404 -3.1420
37 1 -4.4218 -4.5864 -3.2910
38 1 -5.7202 -2.7763 -1.1994
39 1 -5.7712 -5.7247 -1.8312
40 1 -6.0633 -4.8900 -0.2730
41 1 -8.3094 -4.2732 -0.8999
42 1 -8.1670 -5.9072 -1.6243
43 1 -8.8594 -3.8391 -3.2073
44 1 -7.6503 -5.0171 -3.8040
45 1 -7.2471 -2.2021 -2.8003
46 1 -6.3114 -3.1130 -4.0188
47 1 2.5318 -6.2448 0.6948
48 1 2.0909 -5.5385 -2.2038
49 1 3.6167 -5.9185 -1.3450
50 1 3.1877 -8.2913 -1.4065
51 1 2.5543 -7.7674 -2.9999
52 1 0.9270 -9.1276 -1.3373
53 1 0.2824 -7.6956 -2.1974
54 1 1.0645 -7.9970 0.6993
55 1 -0.1856 -6.9516 -0.0314
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001724085790.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:48:28
Heat of formation + Delta-G solvation = -121.244006 kcal
Electronic energy + Delta-G solvation = -30757.722129 eV
Core-core repulsion = 26792.646909 eV
Total energy + Delta-G solvation = -3965.075220 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.50 seconds
Orbital eigenvalues (eV)
-41.26163 -39.84037 -39.07707 -37.72411 -36.73966 -35.10194 -33.14397 -31.71334
-31.08897 -29.59156 -29.57239 -28.52387 -27.67022 -25.27873 -24.99306 -22.96715
-22.15682 -21.53696 -21.08767 -20.56982 -20.36494 -19.18591 -18.37859 -17.77044
-17.36344 -17.04962 -16.63299 -16.55362 -16.28534 -16.05109 -15.79569 -15.27049
-15.21298 -15.03231 -14.91595 -14.24010 -14.21643 -14.12898 -14.01072 -13.64039
-13.37455 -13.12240 -12.99202 -12.80566 -12.78323 -12.16842 -12.12356 -11.99918
-11.97810 -11.90704 -11.89599 -11.83033 -11.69536 -11.64905 -11.53234 -11.48801
-11.43401 -11.35267 -11.34136 -11.00216 -10.73539 -10.63820 -9.93749 -8.99831
-7.93445 -5.23837 1.44660 1.46605 1.56491 1.64696 1.94700 2.54749
3.00011 3.39368 3.56760 3.69285 3.71600 3.73767 3.80370 3.84755
3.91382 4.13703 4.17698 4.26064 4.28600 4.35679 4.40596 4.41401
4.48604 4.56361 4.58713 4.62823 4.67804 4.71040 4.75023 4.79951
4.84319 4.88736 4.90340 4.91778 4.92289 5.06099 5.08506 5.10098
5.15764 5.19441 5.24709 5.32481 5.35407 5.40165 5.45430 5.46288
5.48537 5.50831 5.56081 5.65395 6.13053 6.26011 6.63435 7.31927
7.35342 8.09603 8.32221 9.29499
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.006909 B = 0.003645 C = 0.002515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4051.826114 B = 7680.855666 C =11131.545314
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.969 5.969
2 C -0.078 4.078
3 Si 0.975 3.025
4 H -0.263 1.263
5 H -0.292 1.292
6 H -0.298 1.298
7 C -0.243 4.243
8 H 0.079 0.921
9 N -0.744 5.744
10 C 0.140 3.860
11 C 0.150 3.850
12 H 0.062 0.938
13 N -0.694 5.694
14 C 0.512 3.488
15 O -0.575 6.575
16 C 0.050 3.950
17 O -0.394 6.394
18 C 0.064 3.936
19 C -0.097 4.097
20 C -0.114 4.114
21 C -0.124 4.124
22 C -0.118 4.118
23 C -0.114 4.114
24 C -0.091 4.091
25 C -0.117 4.117
26 C -0.115 4.115
27 C -0.117 4.117
28 C -0.116 4.116
29 H 0.248 0.752
30 H 0.371 0.629
31 H 0.025 0.975
32 H 0.043 0.957
33 H 0.410 0.590
34 H 0.083 0.917
35 H 0.115 0.885
36 H 0.052 0.948
37 H 0.074 0.926
38 H 0.054 0.946
39 H 0.068 0.932
40 H 0.044 0.956
41 H 0.063 0.937
42 H 0.077 0.923
43 H 0.077 0.923
44 H 0.075 0.925
45 H 0.068 0.932
46 H 0.077 0.923
47 H 0.087 0.913
48 H 0.064 0.936
49 H 0.073 0.927
50 H 0.073 0.927
51 H 0.078 0.922
52 H 0.072 0.928
53 H 0.063 0.937
54 H 0.066 0.934
55 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.464 -17.886 -11.914 22.442
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.620 5.620
2 C -0.270 4.270
3 Si 0.804 3.196
4 H -0.187 1.187
5 H -0.219 1.219
6 H -0.226 1.226
7 C -0.375 4.375
8 H 0.097 0.903
9 N -0.387 5.387
10 C 0.013 3.987
11 C 0.045 3.955
12 H 0.080 0.920
13 N -0.347 5.347
14 C 0.299 3.701
15 O -0.454 6.454
16 C -0.030 4.030
17 O -0.313 6.313
18 C -0.012 4.012
19 C -0.116 4.116
20 C -0.152 4.152
21 C -0.162 4.162
22 C -0.156 4.156
23 C -0.152 4.152
24 C -0.110 4.110
25 C -0.155 4.155
26 C -0.152 4.152
27 C -0.154 4.154
28 C -0.154 4.154
29 H 0.057 0.943
30 H 0.203 0.797
31 H 0.043 0.957
32 H 0.061 0.939
33 H 0.247 0.753
34 H 0.101 0.899
35 H 0.133 0.867
36 H 0.070 0.930
37 H 0.092 0.908
38 H 0.073 0.927
39 H 0.086 0.914
40 H 0.063 0.937
41 H 0.082 0.918
42 H 0.095 0.905
43 H 0.096 0.904
44 H 0.094 0.906
45 H 0.087 0.913
46 H 0.096 0.904
47 H 0.106 0.894
48 H 0.083 0.917
49 H 0.091 0.909
50 H 0.092 0.908
51 H 0.097 0.903
52 H 0.091 0.909
53 H 0.081 0.919
54 H 0.085 0.915
55 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -6.645 -17.795 -10.912 21.907
hybrid contribution 0.226 1.540 0.076 1.558
sum -6.419 -16.255 -10.836 20.563
Atomic orbital electron populations
1.69898 1.06796 1.25739 1.59542 1.25615 0.96285 1.01229 1.03835
0.85055 0.78315 0.79737 0.76523 1.18690 1.21869 1.22563 1.19697
0.91522 0.85245 1.41000 0.90296 1.42562 1.05619 1.01165 1.89307
1.21258 0.93799 0.84820 0.98828 1.21104 0.89941 0.94729 0.89734
0.91967 1.45540 1.06070 1.72696 1.10434 1.20747 0.83572 0.75364
0.90412 1.90686 1.77018 1.51813 1.25899 1.22234 0.83226 1.03388
0.94109 1.88000 1.16261 1.92604 1.34397 1.22913 0.87950 1.00380
0.89934 1.21810 0.92976 0.98399 0.98371 1.22345 0.96516 0.96551
0.99767 1.22538 0.94852 1.01418 0.97386 1.22350 0.98786 0.97585
0.96846 1.22127 0.95531 0.99447 0.98079 1.22046 0.96916 0.91981
1.00100 1.22440 1.00243 0.97655 0.95132 1.22468 0.96388 0.95020
1.01352 1.22309 0.97465 0.99966 0.95707 1.22113 0.98093 0.96240
0.98971 0.94295 0.79681 0.95697 0.93924 0.75259 0.89886 0.86724
0.93008 0.90808 0.92749 0.91376 0.93690 0.91828 0.90481 0.90440
0.90599 0.91332 0.90415 0.89437 0.91731 0.90853 0.90836 0.90333
0.90930 0.91859 0.91518 0.94101
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -62.32 13.06 21.65 0.28 -62.04 16
2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16
3 Si 0.97 47.35 29.55 68.60 2.03 49.38 16
4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16
5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16
6 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16
7 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16
8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16
9 N -0.74 -39.38 5.43 -343.43 -1.87 -41.24 16
10 C 0.14 5.61 5.84 86.38 0.50 6.11 16
11 C 0.15 5.10 2.04 45.00 0.09 5.19 16
12 H 0.06 2.62 6.91 -2.39 -0.02 2.60 16
13 N -0.69 -21.98 3.75 -442.51 -1.66 -23.64 16
14 C 0.51 19.34 7.01 87.66 0.61 19.95 16
15 O -0.58 -27.99 15.84 15.98 0.25 -27.73 16
16 C 0.05 1.50 6.42 71.24 0.46 1.96 16
17 O -0.39 -13.66 9.71 -129.94 -1.26 -14.92 16
18 C 0.06 1.62 4.98 71.98 0.36 1.98 16
19 C -0.10 -2.36 3.19 -10.06 -0.03 -2.39 16
20 C -0.11 -2.64 6.22 31.70 0.20 -2.45 16
21 C -0.12 -2.16 6.91 31.91 0.22 -1.94 16
22 C -0.12 -1.72 6.83 31.67 0.22 -1.51 16
23 C -0.11 -2.02 6.46 31.32 0.20 -1.82 16
24 C -0.09 -2.21 2.81 -10.07 -0.03 -2.24 16
25 C -0.12 -2.28 5.13 31.70 0.16 -2.12 16
26 C -0.11 -1.75 6.91 31.91 0.22 -1.53 16
27 C -0.12 -2.01 6.83 31.67 0.22 -1.80 16
28 C -0.12 -2.67 6.19 31.32 0.19 -2.47 16
29 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16
30 H 0.37 21.80 6.80 -92.72 -0.63 21.17 16
31 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16
32 H 0.04 1.57 7.13 -2.39 -0.02 1.55 16
33 H 0.41 10.40 6.96 -92.71 -0.65 9.75 16
34 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16
35 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16
36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16
37 H 0.07 1.44 8.02 -2.39 -0.02 1.42 16
38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16
39 H 0.07 1.51 7.77 -2.39 -0.02 1.49 16
40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
41 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16
42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
45 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
46 H 0.08 1.18 7.67 -2.39 -0.02 1.17 16
47 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
48 H 0.06 1.29 5.96 -2.38 -0.01 1.27 16
49 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
51 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16
52 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
53 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
54 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
55 H 0.04 1.17 7.12 -2.39 -0.02 1.16 16
Total: -1.00 -78.58 424.97 2.26 -76.32
By element:
Atomic # 1 Polarization: 46.56 SS G_CDS: -0.42 Total: 46.14 kcal
Atomic # 6 Polarization: -7.17 SS G_CDS: 4.90 Total: -2.27 kcal
Atomic # 7 Polarization: -123.68 SS G_CDS: -3.24 Total: -126.92 kcal
Atomic # 8 Polarization: -41.65 SS G_CDS: -1.01 Total: -42.65 kcal
Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal
Total: -78.58 2.26 -76.32 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724085790.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.926 kcal
(2) G-P(sol) polarization free energy of solvation -78.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.502 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.318 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.50 seconds