Wall clock time and date at job start Tue Mar 31 2020 21:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 120.00250 * 2 1 4 4 O 1.21588 * 119.99827 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00270 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00036 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46777 * 179.97438 * 6 5 3 8 8 C 1.50705 * 109.46892 * 180.02562 * 7 6 5 9 9 O 1.21273 * 119.99950 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99702 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99944 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47079 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.43972 * 59.43984 * 12 11 10 14 14 C 1.53148 * 109.39711 * 179.32612 * 12 11 10 15 15 C 1.53705 * 108.87780 * 66.15264 * 14 12 11 16 16 H 1.09000 * 112.10117 * 187.61836 * 15 14 12 17 17 C 1.54608 * 107.83005 * 312.23223 * 15 14 12 18 18 C 1.55900 * 104.90340 * 88.65423 * 17 15 14 19 19 C 1.54609 * 103.99056 * 0.02562 * 18 17 15 20 20 H 1.09005 * 112.18802 * 147.20767 * 19 18 17 21 21 C 1.53149 * 109.43543 * 299.52497 * 12 11 10 22 22 N 1.48290 * 104.81799 * 25.18946 * 19 18 17 23 23 C 1.36937 * 128.21151 * 138.73348 * 22 19 18 24 24 H 1.08001 * 119.99640 * 195.82940 * 23 22 19 25 25 C 1.38811 * 119.99831 * 15.83568 * 23 22 19 26 26 N 1.31620 * 120.00170 * 6.28101 * 25 23 22 27 27 Si 1.86803 * 119.99858 * 186.29095 * 25 23 22 28 28 H 1.48501 * 109.47243 * 84.98798 * 27 25 23 29 29 H 1.48501 * 109.46962 * 204.99063 * 27 25 23 30 30 H 1.48499 * 109.46887 * 324.98673 * 27 25 23 31 31 H 1.09004 * 109.46972 * 60.00007 * 1 2 3 32 32 H 1.09001 * 109.47684 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47432 * 300.00254 * 1 2 3 34 34 H 0.97003 * 119.99448 * 179.97438 * 2 1 3 35 35 H 0.97003 * 119.99428 * 0.02562 * 5 3 2 36 36 H 1.09001 * 109.47039 * 60.00686 * 6 5 3 37 37 H 1.08997 * 109.47306 * 300.00326 * 6 5 3 38 38 H 1.09001 * 109.46756 * 60.00537 * 7 6 5 39 39 H 1.08997 * 109.47489 * 300.00238 * 7 6 5 40 40 H 0.96994 * 120.00139 * 0.02562 * 10 8 7 41 41 H 1.08996 * 109.47021 * 59.99539 * 11 10 8 42 42 H 1.09005 * 109.46679 * 299.99869 * 11 10 8 43 43 H 1.09003 * 109.57178 * 185.96635 * 14 12 11 44 44 H 1.08999 * 109.57363 * 306.21636 * 14 12 11 45 45 H 1.09004 * 110.38146 * 207.48815 * 17 15 14 46 46 H 1.08999 * 110.38505 * 329.84569 * 17 15 14 47 47 H 1.08999 * 110.40310 * 241.61337 * 18 17 15 48 48 H 1.09004 * 111.08542 * 118.75523 * 18 17 15 49 49 H 1.08996 * 109.56914 * 174.04950 * 21 12 11 50 50 H 1.08996 * 109.66303 * 53.75042 * 21 12 11 51 51 H 0.96997 * 119.99719 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2192 2.4358 0.0000 7 6 5.7235 2.1561 0.0014 8 6 6.4770 3.4613 0.0014 9 8 5.8707 4.5115 0.0009 10 7 7.8247 3.4612 0.0021 11 6 8.5573 4.7299 0.0027 12 6 10.0615 4.4502 0.0027 13 1 10.3227 3.8705 -0.8827 14 6 10.8256 5.7773 -0.0137 15 6 10.5669 6.5165 1.3089 16 1 10.9771 7.5263 1.3014 17 6 9.0439 6.4932 1.5742 18 6 8.7951 5.1737 2.3664 19 6 10.2010 4.5432 2.4935 20 1 10.3211 3.9891 3.4245 21 6 10.4323 3.6568 1.2590 22 7 11.1398 5.6870 2.3967 23 6 12.2743 5.9159 3.1286 24 1 12.7224 6.8985 3.1369 25 6 12.8485 4.8849 3.8595 26 7 12.3772 3.6606 3.7527 27 14 14.2899 5.2351 4.9949 28 1 13.7819 5.6955 6.3122 29 1 15.0884 3.9965 5.1777 30 1 15.1453 6.2918 4.3974 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.9499 -0.8401 0.0004 35 1 3.9716 0.3270 0.0005 36 1 3.9556 3.0079 0.8895 37 1 3.9562 3.0068 -0.8904 38 1 5.9874 1.5838 -0.8880 39 1 5.9861 1.5853 0.8920 40 1 8.3097 2.6212 0.0021 41 1 8.2936 5.3013 0.8926 42 1 8.2944 5.3016 -0.8874 43 1 11.8928 5.5829 -0.1205 44 1 10.4802 6.3873 -0.8484 45 1 8.7496 7.3553 2.1727 46 1 8.4947 6.4783 0.6328 47 1 8.1320 4.5138 1.8069 48 1 8.3814 5.3810 3.3534 49 1 11.4814 3.3653 1.2103 50 1 9.8086 2.7655 1.3273 51 1 12.7782 2.9403 4.2638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724595760.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:24 Heat of formation + Delta-G solvation = 49.751443 kcal Electronic energy + Delta-G solvation = -30505.229084 eV Core-core repulsion = 26444.028439 eV Total energy + Delta-G solvation = -4061.200645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21237 -40.17342 -39.03380 -35.59001 -34.73930 -34.66369 -32.90418 -31.47797 -31.15069 -30.24748 -29.86459 -27.22201 -26.35596 -24.07185 -23.27688 -23.01633 -21.23646 -20.61333 -20.44431 -19.45532 -18.98840 -18.59978 -17.20376 -16.91816 -16.51596 -16.21222 -15.97166 -15.41831 -14.96255 -14.70017 -14.54543 -14.38275 -14.05085 -13.63771 -13.36422 -13.02693 -12.94625 -12.81478 -12.60956 -12.56524 -12.13287 -11.93805 -11.74260 -11.62505 -11.44150 -11.39762 -11.23330 -10.83708 -10.72551 -10.58798 -10.50106 -10.17406 -9.92048 -9.68027 -9.58630 -9.52317 -9.44964 -9.36888 -9.21731 -9.10494 -8.61925 -8.12506 -6.79954 -5.77840 -3.13441 2.39078 2.75218 2.98860 3.37089 3.40833 3.43160 3.43447 4.02783 4.45483 4.53431 4.84859 4.86876 4.90768 5.20815 5.22661 5.25673 5.30883 5.45509 5.46129 5.48946 5.60316 5.71859 5.73381 5.82502 5.83872 5.92464 6.06299 6.08810 6.10945 6.17152 6.20821 6.27280 6.43139 6.48233 6.56931 6.58965 6.63603 6.70723 6.79649 6.84238 6.92289 7.06509 7.10790 7.54534 7.57831 7.68768 7.72464 7.75420 8.24260 8.34482 8.38458 9.13356 9.74797 10.54716 11.33950 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.002177 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.072533 B =12858.735311 C =13443.536067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.701 3.299 4 O -0.586 6.586 5 N -0.747 5.747 6 C 0.154 3.846 7 C -0.155 4.155 8 C 0.511 3.489 9 O -0.542 6.542 10 N -0.718 5.718 11 C 0.003 3.997 12 C -0.087 4.087 13 H 0.049 0.951 14 C -0.121 4.121 15 C 0.148 3.852 16 H 0.067 0.933 17 C -0.160 4.160 18 C -0.174 4.174 19 C 0.182 3.818 20 H 0.110 0.890 21 C -0.110 4.110 22 N -0.583 5.583 23 C -0.220 4.220 24 H 0.074 0.926 25 C -0.006 4.006 26 N -0.914 5.914 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.397 0.603 35 H 0.395 0.605 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.395 0.605 41 H 0.194 0.806 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.055 0.945 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.036 0.964 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.233 -10.489 -9.178 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.463 6.463 5 N -0.403 5.403 6 C 0.029 3.971 7 C -0.196 4.196 8 C 0.296 3.704 9 O -0.420 6.420 10 N -0.369 5.369 11 C -0.116 4.116 12 C -0.106 4.106 13 H 0.068 0.932 14 C -0.162 4.162 15 C 0.040 3.960 16 H 0.085 0.915 17 C -0.198 4.198 18 C -0.213 4.213 19 C 0.075 3.925 20 H 0.127 0.873 21 C -0.150 4.150 22 N -0.304 5.304 23 C -0.348 4.348 24 H 0.092 0.908 25 C -0.203 4.203 26 N -0.561 5.561 27 Si 0.741 3.259 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.228 0.772 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.230 0.770 41 H 0.209 0.791 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.093 0.907 50 H 0.055 0.945 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.020 -8.809 -9.010 20.381 hybrid contribution 1.690 -1.388 0.282 2.205 sum -14.330 -10.197 -8.728 19.634 Atomic orbital electron populations 1.21388 0.78149 1.01881 1.02366 1.44918 1.07794 1.07102 1.81097 1.15946 0.81745 0.84295 0.77990 1.90966 1.67796 1.30290 1.57229 1.45108 1.04752 1.09868 1.80563 1.20890 0.88053 0.84002 1.04134 1.21821 0.95366 0.97413 1.04994 1.20173 0.82680 0.90633 0.76916 1.90732 1.68107 1.33371 1.49766 1.46317 1.05880 1.10799 1.73927 1.25213 0.92284 0.86076 1.07986 1.21271 0.92733 0.97788 0.98815 0.93230 1.22131 1.00123 0.95574 0.98331 1.21564 0.91420 0.94691 0.88352 0.91479 1.23627 0.98649 0.97527 0.99987 1.23832 1.01314 0.97080 0.99031 1.21459 0.84462 0.88832 0.97754 0.87280 1.22068 1.01636 0.96465 0.94793 1.45163 1.25436 1.23169 1.36667 1.18993 1.00283 0.94698 1.20858 0.90800 1.24845 0.98921 0.95078 1.01437 1.69837 1.43144 0.99069 1.44001 0.86174 0.82043 0.76864 0.80863 1.21630 1.21787 1.20799 0.92394 0.90718 0.92337 0.77040 0.77160 0.90456 0.90661 0.88515 0.88153 0.77020 0.79053 0.93572 0.91658 0.93635 0.92631 0.89256 0.88997 0.93027 0.90747 0.94548 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 10.70 59.85 0.64 1.29 16 2 N -0.75 -5.24 5.72 -72.07 -0.41 -5.65 16 3 C 0.70 7.74 8.57 -86.92 -0.74 7.00 16 4 O -0.59 -9.44 16.34 5.29 0.09 -9.36 16 5 N -0.75 -6.30 5.56 -65.23 -0.36 -6.66 16 6 C 0.15 1.65 4.96 -4.04 -0.02 1.63 16 7 C -0.16 -1.33 5.81 -27.88 -0.16 -1.49 16 8 C 0.51 6.69 7.59 -10.98 -0.08 6.61 16 9 O -0.54 -9.34 15.98 5.56 0.09 -9.25 16 10 N -0.72 -9.21 4.38 -60.30 -0.26 -9.48 16 11 C 0.00 0.05 2.66 -4.04 -0.01 0.04 16 12 C -0.09 -1.44 2.76 -90.47 -0.25 -1.69 16 13 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 14 C -0.12 -2.16 5.37 -26.29 -0.14 -2.30 16 15 C 0.15 2.92 4.32 -65.72 -0.28 2.63 16 16 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 17 C -0.16 -2.84 5.75 -24.34 -0.14 -2.98 16 18 C -0.17 -3.27 5.83 -24.34 -0.14 -3.41 16 19 C 0.18 3.97 3.11 -65.72 -0.20 3.77 16 20 H 0.11 2.78 6.28 -51.93 -0.33 2.45 16 21 C -0.11 -2.12 5.17 -26.28 -0.14 -2.25 16 22 N -0.58 -13.85 2.83 -152.74 -0.43 -14.28 16 23 C -0.22 -5.82 10.39 -15.06 -0.16 -5.98 16 24 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 25 C -0.01 -0.16 5.45 -17.43 -0.09 -0.26 16 26 N -0.91 -24.97 10.50 55.49 0.58 -24.38 16 27 Si 0.91 21.38 29.56 -169.99 -5.02 16.35 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 30 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.40 1.39 8.84 -40.82 -0.36 1.03 16 35 H 0.40 1.87 8.49 -40.82 -0.35 1.52 16 36 H 0.08 1.02 8.10 -51.93 -0.42 0.59 16 37 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.40 4.27 7.35 -40.82 -0.30 3.97 16 41 H 0.19 3.21 1.12 -164.95 -0.19 3.02 16 42 H 0.05 0.73 7.99 -51.93 -0.41 0.31 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 1.47 4.83 -51.93 -0.25 1.22 16 47 H 0.09 1.58 3.97 -51.93 -0.21 1.38 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.07 1.70 7.99 -51.93 -0.41 1.29 16 50 H 0.04 0.61 6.75 -51.93 -0.35 0.26 16 51 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -34.16 386.15 -10.04 -44.20 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -8.19 Total: 10.08 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.93 Total: 2.60 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.89 Total: -60.45 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.18 Total: -18.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.16 -10.04 -44.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724595760.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.954 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds