Wall clock time and date at job start Tue Mar 31 2020 21:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 120.00250 * 2 1 4 4 O 1.21588 * 119.99827 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00270 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00036 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46777 * 179.97438 * 6 5 3 8 8 C 1.50705 * 109.46892 * 180.02562 * 7 6 5 9 9 O 1.21273 * 119.99950 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99702 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99944 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47079 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.43972 * 59.43984 * 12 11 10 14 14 C 1.53148 * 109.39711 * 179.32612 * 12 11 10 15 15 C 1.53705 * 108.87780 * 66.15264 * 14 12 11 16 16 H 1.09000 * 112.10117 * 187.61836 * 15 14 12 17 17 C 1.54608 * 107.83005 * 312.23223 * 15 14 12 18 18 C 1.55900 * 104.90340 * 88.65423 * 17 15 14 19 19 C 1.54609 * 103.99056 * 0.02562 * 18 17 15 20 20 H 1.09005 * 112.18802 * 147.20767 * 19 18 17 21 21 C 1.53149 * 109.43543 * 299.52497 * 12 11 10 22 22 N 1.48290 * 104.81799 * 25.18946 * 19 18 17 23 23 C 1.36937 * 128.21151 * 138.73348 * 22 19 18 24 24 H 1.08001 * 119.99640 * 195.82940 * 23 22 19 25 25 C 1.38811 * 119.99831 * 15.83568 * 23 22 19 26 26 N 1.31620 * 120.00170 * 6.28101 * 25 23 22 27 27 Si 1.86803 * 119.99858 * 186.29095 * 25 23 22 28 28 H 1.48501 * 109.47243 * 84.98798 * 27 25 23 29 29 H 1.48501 * 109.46962 * 204.99063 * 27 25 23 30 30 H 1.48499 * 109.46887 * 324.98673 * 27 25 23 31 31 H 1.09004 * 109.46972 * 60.00007 * 1 2 3 32 32 H 1.09001 * 109.47684 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47432 * 300.00254 * 1 2 3 34 34 H 0.97003 * 119.99448 * 179.97438 * 2 1 3 35 35 H 0.97003 * 119.99428 * 0.02562 * 5 3 2 36 36 H 1.09001 * 109.47039 * 60.00686 * 6 5 3 37 37 H 1.08997 * 109.47306 * 300.00326 * 6 5 3 38 38 H 1.09001 * 109.46756 * 60.00537 * 7 6 5 39 39 H 1.08997 * 109.47489 * 300.00238 * 7 6 5 40 40 H 0.96994 * 120.00139 * 0.02562 * 10 8 7 41 41 H 1.08996 * 109.47021 * 59.99539 * 11 10 8 42 42 H 1.09005 * 109.46679 * 299.99869 * 11 10 8 43 43 H 1.09003 * 109.57178 * 185.96635 * 14 12 11 44 44 H 1.08999 * 109.57363 * 306.21636 * 14 12 11 45 45 H 1.09004 * 110.38146 * 207.48815 * 17 15 14 46 46 H 1.08999 * 110.38505 * 329.84569 * 17 15 14 47 47 H 1.08999 * 110.40310 * 241.61337 * 18 17 15 48 48 H 1.09004 * 111.08542 * 118.75523 * 18 17 15 49 49 H 1.08996 * 109.56914 * 174.04950 * 21 12 11 50 50 H 1.08996 * 109.66303 * 53.75042 * 21 12 11 51 51 H 0.96997 * 119.99719 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2192 2.4358 0.0000 7 6 5.7235 2.1561 0.0014 8 6 6.4770 3.4613 0.0014 9 8 5.8707 4.5115 0.0009 10 7 7.8247 3.4612 0.0021 11 6 8.5573 4.7299 0.0027 12 6 10.0615 4.4502 0.0027 13 1 10.3227 3.8705 -0.8827 14 6 10.8256 5.7773 -0.0137 15 6 10.5669 6.5165 1.3089 16 1 10.9771 7.5263 1.3014 17 6 9.0439 6.4932 1.5742 18 6 8.7951 5.1737 2.3664 19 6 10.2010 4.5432 2.4935 20 1 10.3211 3.9891 3.4245 21 6 10.4323 3.6568 1.2590 22 7 11.1398 5.6870 2.3967 23 6 12.2743 5.9159 3.1286 24 1 12.7224 6.8985 3.1369 25 6 12.8485 4.8849 3.8595 26 7 12.3772 3.6606 3.7527 27 14 14.2899 5.2351 4.9949 28 1 13.7819 5.6955 6.3122 29 1 15.0884 3.9965 5.1777 30 1 15.1453 6.2918 4.3974 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.9499 -0.8401 0.0004 35 1 3.9716 0.3270 0.0005 36 1 3.9556 3.0079 0.8895 37 1 3.9562 3.0068 -0.8904 38 1 5.9874 1.5838 -0.8880 39 1 5.9861 1.5853 0.8920 40 1 8.3097 2.6212 0.0021 41 1 8.2936 5.3013 0.8926 42 1 8.2944 5.3016 -0.8874 43 1 11.8928 5.5829 -0.1205 44 1 10.4802 6.3873 -0.8484 45 1 8.7496 7.3553 2.1727 46 1 8.4947 6.4783 0.6328 47 1 8.1320 4.5138 1.8069 48 1 8.3814 5.3810 3.3534 49 1 11.4814 3.3653 1.2103 50 1 9.8086 2.7655 1.3273 51 1 12.7782 2.9403 4.2638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724595760.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:23 Heat of formation + Delta-G solvation = 23.494879 kcal Electronic energy + Delta-G solvation = -30506.367654 eV Core-core repulsion = 26444.028439 eV Total energy + Delta-G solvation = -4062.339215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.63155 -41.02248 -40.16906 -36.46541 -36.02264 -35.54255 -34.56977 -32.88530 -32.28895 -31.72639 -31.43996 -28.40428 -27.36662 -25.53035 -24.80861 -24.15906 -22.08009 -22.03823 -21.56247 -20.99790 -20.30261 -19.63106 -18.74390 -17.97785 -17.70040 -17.06070 -17.02076 -16.63444 -16.40534 -16.10480 -15.58597 -15.35356 -15.19251 -14.70370 -14.57025 -14.49959 -14.28574 -14.13124 -13.80038 -13.66553 -13.26445 -13.10149 -13.00786 -12.96859 -12.92547 -12.81471 -12.61854 -12.40637 -12.37745 -12.31460 -11.95872 -11.50001 -11.42119 -11.18887 -11.04135 -10.92220 -10.85587 -10.68900 -10.43468 -10.40017 -9.77783 -9.40331 -8.67770 -7.79357 -5.14484 1.47723 1.48889 1.55854 1.66629 1.75682 2.14319 2.45666 2.52617 3.36477 3.41893 3.64555 3.74054 3.97108 4.01114 4.03199 4.13748 4.15176 4.28898 4.32655 4.46059 4.48694 4.57880 4.59269 4.65869 4.68266 4.76262 4.82255 4.92015 4.94788 4.96485 5.01903 5.03175 5.10085 5.19898 5.21344 5.33494 5.41598 5.44109 5.51342 5.54881 5.56792 5.58818 5.67335 5.86486 5.96651 6.02983 6.34210 6.69440 7.13891 7.15524 7.38054 7.60076 7.80783 8.62306 9.30485 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.002177 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.072533 B =12858.735311 C =13443.536067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.736 5.736 3 C 0.691 3.309 4 O -0.644 6.644 5 N -0.728 5.728 6 C 0.160 3.840 7 C -0.139 4.139 8 C 0.508 3.492 9 O -0.587 6.587 10 N -0.712 5.712 11 C 0.012 3.988 12 C -0.076 4.076 13 H 0.071 0.929 14 C -0.117 4.117 15 C 0.139 3.861 16 H 0.065 0.935 17 C -0.149 4.149 18 C -0.164 4.164 19 C 0.176 3.824 20 H 0.067 0.933 21 C -0.098 4.098 22 N -0.607 5.607 23 C -0.231 4.231 24 H 0.070 0.930 25 C -0.057 4.057 26 N -0.932 5.932 27 Si 0.967 3.033 28 H -0.291 1.291 29 H -0.295 1.295 30 H -0.276 1.276 31 H 0.044 0.956 32 H 0.115 0.885 33 H 0.043 0.957 34 H 0.417 0.583 35 H 0.417 0.583 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.409 0.591 41 H 0.178 0.822 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.039 0.961 49 H 0.033 0.967 50 H 0.060 0.940 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.963 -12.329 -10.692 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.392 5.392 3 C 0.390 3.610 4 O -0.526 6.526 5 N -0.386 5.386 6 C 0.034 3.966 7 C -0.179 4.179 8 C 0.295 3.705 9 O -0.468 6.468 10 N -0.364 5.364 11 C -0.108 4.108 12 C -0.095 4.095 13 H 0.089 0.911 14 C -0.157 4.157 15 C 0.032 3.968 16 H 0.083 0.917 17 C -0.187 4.187 18 C -0.202 4.202 19 C 0.069 3.931 20 H 0.085 0.915 21 C -0.138 4.138 22 N -0.329 5.329 23 C -0.361 4.361 24 H 0.088 0.912 25 C -0.251 4.251 26 N -0.580 5.580 27 Si 0.797 3.203 28 H -0.218 1.218 29 H -0.222 1.222 30 H -0.201 1.201 31 H 0.063 0.937 32 H 0.134 0.866 33 H 0.062 0.938 34 H 0.254 0.746 35 H 0.255 0.745 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.246 0.754 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.058 0.942 49 H 0.052 0.948 50 H 0.078 0.922 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.727 -10.733 -10.543 22.497 hybrid contribution 1.874 -0.810 0.752 2.176 sum -14.852 -11.543 -9.791 21.206 Atomic orbital electron populations 1.21531 0.77516 1.04114 1.01030 1.44802 1.08214 1.06744 1.79485 1.16297 0.82383 0.84520 0.77793 1.90928 1.69094 1.32695 1.59865 1.44804 1.03977 1.10159 1.79637 1.20627 0.89869 0.84524 1.01570 1.21752 0.92606 0.95366 1.08138 1.20890 0.82515 0.91623 0.75473 1.90727 1.68904 1.35445 1.51676 1.46180 1.05965 1.10538 1.73687 1.24802 0.91260 0.87297 1.07429 1.21145 0.93472 0.96869 0.97985 0.91074 1.22045 0.99095 0.96514 0.98058 1.21794 0.92316 0.94332 0.88360 0.91705 1.23587 0.97291 0.96880 1.00942 1.23791 0.99564 0.97838 0.99045 1.21385 0.85806 0.88742 0.97137 0.91517 1.21846 0.99592 0.97283 0.95067 1.45361 1.25176 1.24411 1.37912 1.19246 1.01113 0.94573 1.21154 0.91205 1.25502 1.01322 0.95186 1.03115 1.70016 1.43961 0.99385 1.44614 0.85267 0.79558 0.76458 0.79006 1.21848 1.22168 1.20103 0.93690 0.86629 0.93834 0.74645 0.74539 0.93486 0.93129 0.84779 0.85291 0.75424 0.80622 0.92993 0.93951 0.90533 0.92591 0.86970 0.86949 0.94237 0.94830 0.92165 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 10.70 127.77 1.37 2.46 16 2 N -0.74 -8.72 5.72 -500.19 -2.86 -11.58 16 3 C 0.69 14.58 8.57 179.05 1.53 16.12 16 4 O -0.64 -21.24 16.34 -3.99 -0.07 -21.31 16 5 N -0.73 -10.74 5.56 -478.53 -2.66 -13.40 16 6 C 0.16 3.23 4.96 86.38 0.43 3.66 16 7 C -0.14 -1.87 5.81 29.85 0.17 -1.70 16 8 C 0.51 11.92 7.59 87.66 0.67 12.58 16 9 O -0.59 -19.44 15.98 -3.01 -0.05 -19.49 16 10 N -0.71 -15.83 4.38 -463.07 -2.03 -17.86 16 11 C 0.01 0.34 2.66 86.38 0.23 0.57 16 12 C -0.08 -2.33 2.76 -10.70 -0.03 -2.36 16 13 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 14 C -0.12 -3.97 5.37 30.88 0.17 -3.80 16 15 C 0.14 5.40 4.32 45.43 0.20 5.60 16 16 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 17 C -0.15 -5.11 5.75 32.15 0.18 -4.93 16 18 C -0.16 -6.06 5.83 32.15 0.19 -5.87 16 19 C 0.18 7.77 3.11 45.44 0.14 7.91 16 20 H 0.07 3.52 6.28 -2.38 -0.01 3.51 16 21 C -0.10 -3.72 5.17 30.89 0.16 -3.56 16 22 N -0.61 -29.29 2.83 -637.14 -1.80 -31.09 16 23 C -0.23 -12.56 10.39 84.03 0.87 -11.69 16 24 H 0.07 3.73 7.84 -2.91 -0.02 3.70 16 25 C -0.06 -3.12 5.45 84.86 0.46 -2.66 16 26 N -0.93 -52.49 10.50 21.65 0.23 -52.27 16 27 Si 0.97 44.92 29.56 68.60 2.03 46.95 16 28 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 29 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 30 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 31 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.42 1.52 8.84 -92.71 -0.82 0.70 16 35 H 0.42 2.37 8.49 -92.71 -0.79 1.58 16 36 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.41 7.10 7.35 -92.71 -0.68 6.42 16 41 H 0.18 5.48 1.12 -108.55 -0.12 5.36 16 42 H 0.05 1.44 7.99 -2.38 -0.02 1.42 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.11 3.40 4.83 -2.39 -0.01 3.39 16 47 H 0.11 3.67 3.97 -2.39 -0.01 3.66 16 48 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.03 1.54 7.99 -2.39 -0.02 1.52 16 50 H 0.06 1.93 6.75 -2.39 -0.02 1.91 16 51 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -79.91 386.15 -1.89 -81.80 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -1.43 Total: 25.93 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.74 Total: 12.32 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -9.12 Total: -126.19 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.11 Total: -40.80 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -79.91 -1.89 -81.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724595760.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.293 kcal (2) G-P(sol) polarization free energy of solvation -79.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds