Wall clock time and date at job start Tue Mar 31 2020 20:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99741 * 2 1 4 4 C 1.46894 * 111.00280 * 123.95627 * 2 1 3 5 5 C 1.53004 * 109.47128 * 169.99925 * 4 2 1 6 6 C 1.50697 * 109.47311 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99886 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.47154 * 120.68030 * 0.02562 * 8 6 5 10 10 C 1.55316 * 107.98978 * 132.37931 * 9 8 6 11 11 H 1.09000 * 112.23070 * 181.87529 * 10 9 8 12 12 C 1.54548 * 108.40589 * 307.02049 * 10 9 8 13 13 C 1.54261 * 104.93969 * 88.39126 * 12 10 9 14 14 C 1.54541 * 104.93732 * 359.97438 * 13 12 10 15 15 H 1.09008 * 112.20148 * 146.47668 * 14 13 12 16 16 C 1.47151 * 120.68904 * 179.97438 * 8 6 5 17 17 N 1.48730 * 104.32686 * 24.74757 * 14 13 12 18 18 C 1.46904 * 110.99735 * 78.35515 * 17 14 13 19 19 C 1.50706 * 109.46676 * 170.00343 * 18 17 14 20 20 O 1.21288 * 120.00284 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99730 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99910 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00053 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99930 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00155 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00503 * 26 24 22 30 30 H 1.08999 * 109.46748 * 296.03759 * 1 2 3 31 31 H 1.08997 * 109.47528 * 56.04299 * 1 2 3 32 32 H 1.09000 * 109.47006 * 176.04690 * 1 2 3 33 33 H 1.09000 * 109.47222 * 183.95676 * 3 2 1 34 34 H 1.08997 * 109.47417 * 303.95936 * 3 2 1 35 35 H 1.09005 * 109.47166 * 63.95930 * 3 2 1 36 36 H 1.09006 * 109.47276 * 50.00228 * 4 2 1 37 37 H 1.08991 * 109.47105 * 289.99889 * 4 2 1 38 38 H 1.08999 * 109.47087 * 60.00189 * 5 4 2 39 39 H 1.09004 * 109.46907 * 300.00125 * 5 4 2 40 40 H 1.09005 * 109.74484 * 252.24861 * 9 8 6 41 41 H 1.09005 * 109.74765 * 12.92414 * 9 8 6 42 42 H 1.09003 * 110.34503 * 207.25498 * 12 10 9 43 43 H 1.09001 * 110.34646 * 329.41768 * 12 10 9 44 44 H 1.08994 * 110.34313 * 241.12912 * 13 12 10 45 45 H 1.08999 * 110.34419 * 118.86514 * 13 12 10 46 46 H 1.08999 * 109.74745 * 107.74171 * 16 8 6 47 47 H 1.09003 * 109.74290 * 347.02545 * 16 8 6 48 48 H 1.08996 * 109.47230 * 50.00891 * 18 17 14 49 49 H 1.09002 * 109.47146 * 290.00123 * 18 17 14 50 50 H 0.96996 * 119.99887 * 0.02562 * 21 19 18 51 51 H 0.97001 * 119.99781 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9702 6 6 4.0446 -1.7417 2.1367 7 8 3.2963 -2.1136 3.0157 8 7 5.3592 -2.0307 2.2039 9 6 6.2809 -1.5855 1.1466 10 6 7.5171 -0.9386 1.8290 11 1 8.2337 -0.5530 1.1039 12 6 7.0202 0.1458 2.8117 13 6 6.7846 -0.6001 4.1412 14 6 7.1590 -2.0700 3.8451 15 1 7.5977 -2.5658 4.7111 16 6 5.9028 -2.7971 3.3364 17 7 8.1093 -1.9849 2.7042 18 6 9.4483 -1.5911 3.1626 19 6 10.4333 -1.7522 2.0334 20 8 10.0569 -2.1549 0.9531 21 7 11.7324 -1.4478 2.2239 22 6 12.6286 -1.5948 1.1969 23 1 12.2935 -1.9542 0.2351 24 6 13.9679 -1.2814 1.3934 25 7 14.3757 -0.8446 2.5638 26 14 15.1889 -1.4811 -0.0062 27 1 16.5423 -1.0824 0.4569 28 1 15.2128 -2.9000 -0.4437 29 1 14.7821 -0.6188 -1.1448 30 1 -0.3633 0.4511 0.9234 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0827 1.3433 -0.0709 34 1 1.5897 1.9164 -0.8523 35 1 1.7044 1.8724 0.9234 36 1 1.5090 -1.7407 1.1755 37 1 1.7976 -0.2248 2.0626 38 1 3.9910 0.0194 0.9322 39 1 3.7024 -1.4965 0.0449 40 1 6.5921 -2.4399 0.5455 41 1 5.7860 -0.8498 0.5124 42 1 7.7792 0.9177 2.9396 43 1 6.0900 0.5857 2.4520 44 1 5.7376 -0.5280 4.4358 45 1 7.4277 -0.1948 4.9224 46 1 6.1668 -3.8023 3.0079 47 1 5.1612 -2.8524 4.1333 48 1 9.7470 -2.2240 3.9983 49 1 9.4307 -0.5496 3.4836 50 1 12.0333 -1.1254 3.0878 51 1 13.7416 -0.7406 3.2904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732032933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:18 Heat of formation + Delta-G solvation = -42.308868 kcal Electronic energy + Delta-G solvation = -30645.719554 eV Core-core repulsion = 26580.526875 eV Total energy + Delta-G solvation = -4065.192679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.13766 -39.28236 -38.01513 -37.50480 -34.76938 -34.20894 -32.21804 -31.40931 -31.01654 -30.88478 -27.99655 -27.93421 -26.06036 -25.15263 -24.49511 -23.71129 -21.67702 -20.74935 -20.23762 -19.65416 -18.51017 -17.92285 -17.47467 -16.62376 -16.33080 -16.00212 -15.65883 -15.49410 -15.02908 -14.86145 -14.69677 -14.60998 -14.20746 -14.01484 -13.68021 -13.57982 -13.42870 -13.29149 -12.78200 -12.69202 -12.52886 -12.50249 -12.11708 -12.02944 -11.97352 -11.77717 -11.56923 -11.27866 -11.23896 -11.08968 -11.05389 -10.93970 -10.85251 -10.53773 -10.22221 -9.87590 -9.86024 -9.54396 -8.92838 -8.73605 -8.48919 -8.16603 -8.04389 -6.76467 -3.89769 2.52345 2.83067 3.29635 3.33623 3.53664 3.62809 3.77245 3.85492 4.26240 4.41237 4.53514 4.57621 4.69564 4.75239 4.78923 4.84394 4.84770 5.01312 5.02358 5.12841 5.18003 5.19824 5.22345 5.24324 5.30520 5.38199 5.47293 5.52412 5.52880 5.56885 5.61185 5.64262 5.67968 5.75443 5.77938 5.79769 5.81738 5.87267 5.99952 6.04909 6.14198 6.42323 6.63198 6.64017 6.90429 7.02568 7.34935 7.79102 8.06000 8.06563 8.58980 8.79106 9.46452 9.87200 10.66875 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.002339 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.802780 B =11970.582397 C =12697.215168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.019 3.981 4 C 0.071 3.929 5 C -0.138 4.138 6 C 0.517 3.483 7 O -0.552 6.552 8 N -0.603 5.603 9 C 0.122 3.878 10 C 0.058 3.942 11 H 0.115 0.885 12 C -0.146 4.146 13 C -0.144 4.144 14 C 0.045 3.955 15 H 0.103 0.897 16 C 0.129 3.871 17 N -0.476 5.476 18 C 0.035 3.965 19 C 0.447 3.553 20 O -0.571 6.571 21 N -0.578 5.578 22 C -0.380 4.380 23 H 0.099 0.901 24 C -0.010 4.010 25 N -0.901 5.901 26 Si 1.091 2.909 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.052 0.948 50 H 0.375 0.625 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.148 3.798 0.686 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.130 4.130 4 C -0.057 4.057 5 C -0.178 4.178 6 C 0.305 3.695 7 O -0.431 6.431 8 N -0.336 5.336 9 C -0.001 4.001 10 C -0.051 4.051 11 H 0.133 0.867 12 C -0.186 4.186 13 C -0.184 4.184 14 C -0.065 4.065 15 H 0.121 0.879 16 C 0.006 3.994 17 N -0.198 5.198 18 C -0.097 4.097 19 C 0.233 3.767 20 O -0.454 6.454 21 N -0.216 5.216 22 C -0.510 4.510 23 H 0.117 0.883 24 C -0.213 4.213 25 N -0.541 5.541 26 Si 0.917 3.083 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.070 0.930 50 H 0.207 0.793 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.936 2.729 -0.741 21.126 hybrid contribution -1.574 1.304 2.202 3.005 sum -22.510 4.034 1.461 22.915 Atomic orbital electron populations 1.22362 0.86969 1.02440 1.00492 1.61958 1.08143 1.13972 1.43273 1.22471 1.01138 0.88789 1.00568 1.21826 0.93571 0.99065 0.91221 1.21669 0.96716 1.01315 0.98105 1.20554 0.81619 0.79862 0.87471 1.90674 1.56990 1.54558 1.40867 1.48143 1.07010 1.54502 1.23928 1.22254 0.88960 0.99935 0.88977 1.23693 0.95524 0.89779 0.96151 0.86711 1.22847 1.01246 0.98839 0.95625 1.22826 1.01921 0.95983 0.97630 1.23509 0.93228 0.95509 0.94207 0.87880 1.21744 0.94003 0.94660 0.89013 1.65084 1.00068 1.41990 1.12704 1.21984 0.90017 0.99825 0.97852 1.19629 0.82878 0.84665 0.89526 1.90516 1.78245 1.49973 1.26646 1.41948 1.06913 1.59172 1.13564 1.20506 0.90562 1.45623 0.94282 0.88345 1.26498 0.96911 0.95343 1.02516 1.70907 1.37453 1.43499 1.02222 0.83138 0.75146 0.76877 0.73166 1.20452 1.20996 1.21040 0.95603 0.91267 0.91213 0.91058 0.91266 0.95576 0.89950 0.94014 0.88967 0.87901 0.89681 0.89823 0.91517 0.91492 0.91207 0.91643 0.90592 0.89051 0.89489 0.93044 0.79261 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.57 60.06 0.57 0.76 16 2 N -0.55 -4.71 5.02 -251.26 -1.26 -5.97 16 3 C 0.02 0.13 9.32 60.07 0.56 0.69 16 4 C 0.07 0.68 4.25 -3.83 -0.02 0.67 16 5 C -0.14 -1.28 4.00 -27.88 -0.11 -1.39 16 6 C 0.52 6.24 7.70 -10.99 -0.08 6.16 16 7 O -0.55 -8.33 15.45 5.56 0.09 -8.24 16 8 N -0.60 -7.17 2.28 -170.70 -0.39 -7.56 16 9 C 0.12 1.44 5.88 -2.46 -0.01 1.43 16 10 C 0.06 0.80 3.26 -64.67 -0.21 0.59 16 11 H 0.12 1.89 7.01 -51.93 -0.36 1.53 16 12 C -0.15 -1.71 5.49 -25.26 -0.14 -1.85 16 13 C -0.14 -1.63 5.71 -25.26 -0.14 -1.77 16 14 C 0.05 0.55 3.62 -65.47 -0.24 0.31 16 15 H 0.10 1.13 7.97 -51.92 -0.41 0.72 16 16 C 0.13 1.56 5.92 -3.27 -0.02 1.54 16 17 N -0.48 -7.25 4.54 -213.38 -0.97 -8.22 16 18 C 0.03 0.58 5.15 -4.97 -0.03 0.56 16 19 C 0.45 10.11 7.44 -10.98 -0.08 10.03 16 20 O -0.57 -14.79 14.93 5.55 0.08 -14.71 16 21 N -0.58 -14.13 5.28 -10.96 -0.06 -14.19 16 22 C -0.38 -10.47 9.68 -14.93 -0.14 -10.61 16 23 H 0.10 2.87 7.16 -52.48 -0.38 2.49 16 24 C -0.01 -0.28 5.50 -17.47 -0.10 -0.37 16 25 N -0.90 -24.96 13.68 55.50 0.76 -24.20 16 26 Si 1.09 23.96 29.92 -169.99 -5.09 18.88 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 30 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.07 0.49 6.47 -51.93 -0.34 0.15 16 34 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 35 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 0.85 8.02 -51.93 -0.42 0.44 16 37 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.09 0.74 6.00 -51.93 -0.31 0.43 16 39 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 0.78 6.08 -51.93 -0.32 0.46 16 42 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 43 H 0.07 0.71 7.88 -51.93 -0.41 0.30 16 44 H 0.07 0.80 7.85 -51.93 -0.41 0.40 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 1.11 7.10 -51.93 -0.37 0.74 16 48 H 0.09 1.33 7.96 -51.93 -0.41 0.91 16 49 H 0.05 0.79 6.98 -51.93 -0.36 0.43 16 50 H 0.37 8.51 6.73 -40.82 -0.27 8.23 16 51 H 0.26 6.93 6.78 -40.82 -0.28 6.65 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -33.03 394.03 -9.56 -42.58 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.47 Total: 8.95 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.19 Total: 6.74 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -1.92 Total: -60.14 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.17 Total: -22.95 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.09 Total: 18.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.03 -9.56 -42.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732032933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.274 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds